Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001510

Physical Location & Seq

Genomic Coordinates Reverse (-)

3912269 .. 3914067

Gene Structure 1799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG049400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGCTCTATTTATGTCTAAAATGTGCAGGTAGCAGAGTTGCGCGCGGGTTTGGATCTGATACGTACGTACCAGTTAAGAACAAGGAACAAATCCTACGCCGTACTTACACGTACTGGGCTCGCCGGAAAGCTGACGTGAACTTGTGGAATATGACGATGAATTACAAGGACACTGAGCTGACCTTGGGATTACCTGGTGGTGGAAGCCGTGGTTGTTCAACAGGTGTAGTGGTCTTCGGAGAGTTGATGAAGAGCTCGATGAAACGTGGGTTCATGGATACCGATGATGATCTCAACAACCTTGACCTGGAAAGCTCTAATGGCGAGCCTCGTGGCCAAGCTAAATTGGATGATGGGCCGTCGATGGAAGCAGCTAAGTACTCTTCCAGCAGTACCAGTACTACTGCCGTGAAAGCCCCAACTGCAAAGTACGTATCAATTCTATGTGTTTTATTTCTTTTTTGTGTTATTATTAGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

160

Amino Acids

17.54

Weight (kDa)

8.8

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25510
fragaria_vesca	FvH4_1g04230 FvH4_1g04230 FvH4_1g04240 FvH4_1g04240 FvH4_2g30110
malus_domestica	MD02G1042300.v1.1 MD02G1042400.v1.1 MD02G1061700.v1.1 MD02G1061900.v1.1 MD08G1137200.v1.1 MD15G1115800.v1.1
prunus_persica	Prupe.1G467100_v2.0.a1 Prupe.1G467100_v2.0.a1 Prupe.1G467100_v2.0.a1 Prupe.7G234800_v2.0.a1 Prupe.7G234800_v2.0.a1 Prupe.7G234900_v2.0.a1 Prupe.7G234900_v2.0.a1
pyrus_communis	pycom02g03510 pycom08g11580 pycom15g10440 pycom15g16290 pycom15g16300
rosa_chinensis	RchiOBHm_Chr2g0089791 RchiOBHm_Chr2g0089801 RchiOBHm_Chr6g0312811
rosa_laevigata	RLG00000010296 RLG00000016055 RLG00000016056
rosa_multiflora	Rmu_sc0000665.1_g000009 Rmu_sc0008049.1_g000006
rosa_roxburghii	Rroxscaffold_2G00151610 Rroxscaffold_2G00151620 Rroxscaffold_7G00156470
rosa_rugosa	Rorug02G0003200 Rorug06G0399900
rosa_samantha	Rh2AG048400 Rh2AG048500 Rh2BG047200 Rh2BG047300 Rh2CG049300 Rh2CG049400 Rh2DG048700 Rh2DG048800 Rh6AG516900 Rh6BG528300 Rh6DG519500
rosa_wichuraiana	Rw2G004190 Rw2G004200 Rw6G044900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	17
AccII	CGCG	2 cut(s)	43, 45
AciI	CCGC	1 cut(s)	45
AclWI	GGATC	1 cut(s)	61
AcoI	YGGCCR	1 cut(s)	334
AfaI	GTAC	8 cut(s)	65, 69, 103, 113, 380, 394, 400, 431
AfiI	CCNNNNNNNGG	2 cut(s)	200, 307
AflIII	ACRYGT	1 cut(s)	108
AgsI	TTSAA	1 cut(s)	219
AjiI	CACGTC	1 cut(s)	136
AjnI	CCWGG	2 cut(s)	193, 306
AluBI	AGCT	6 cut(s)	131, 178, 255, 315, 341, 374
AluI	AGCT	6 cut(s)	131, 178, 255, 315, 341, 374
Alw21I	GWGCWC	1 cut(s)	257
AlwI	GGATC	1 cut(s)	61
AoxI	GGCC	2 cut(s)	334, 356
ApeKI	GCWGC	1 cut(s)	371
AspLEI	GCGC	2 cut(s)	43, 45
AspS9I	GGNCC	1 cut(s)	356
BaeI	ACNNNNGTAYC	4 cut(s)	51, 51, 84, 84
BalI	TGGCCA	1 cut(s)	336
BanII	GRGCYC	2 cut(s)	121, 257
BauI	CACGAG	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	383
BccI	CCATC	2 cut(s)	347, 358
BceAI	ACGGC	4 cut(s)	84, 192, 343, 392
BciT130I	CCWGG	2 cut(s)	195, 308
BciVI	GTATCC	1 cut(s)	271
BfuAI	ACCTGC	1 cut(s)	17
BfuI	GTATCC	1 cut(s)	271
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
BmcAI	AGTACT	2 cut(s)	380, 400
Bme1390I	CCNGG	2 cut(s)	195, 308
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	356
BmrFI	CCNGG	2 cut(s)	195, 308
BmrI	ACTGGG	1 cut(s)	124
BmuI	ACTGGG	1 cut(s)	124
BpiI	GAAGAC	1 cut(s)	226
BsaAI	YACGTR	4 cut(s)	63, 67, 111, 433
BsaBI	GATNNNNATC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	183, 208
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 307
Bse1I	ACTGG	3 cut(s)	71, 119, 396
Bse8I	GATNNNNATC	1 cut(s)	288
BseBI	CCWGG	2 cut(s)	195, 308
BseDI	CCNNGG	2 cut(s)	183, 208
BseGI	GGATG	1 cut(s)	355
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	2 cut(s)	200, 307
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	3 cut(s)	71, 119, 396
BsePI	GCGCGC	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	383
BsgI	GTGCAG	1 cut(s)	45
Bsh1236I	CGCG	2 cut(s)	43, 45
BshFI	GGCC	2 cut(s)	336, 358
BsiHKAI	GWGCWC	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	124
BsiWI	CGTACG	1 cut(s)	63
BslI	CCNNNNNNNGG	2 cut(s)	200, 307
BsnI	GGCC	2 cut(s)	336, 358
Bsp1286I	GDGCHC	2 cut(s)	121, 257
Bsp143I	GATC	2 cut(s)	53, 289
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	2 cut(s)	336, 358
BspCNI	CTCAG	1 cut(s)	166
BspFNI	CGCG	2 cut(s)	43, 45
BspMI	ACCTGC	1 cut(s)	17
BspPI	GGATC	1 cut(s)	61
BspQI	GCTCTTC	1 cut(s)	245
BsrI	ACTGG	3 cut(s)	71, 119, 396
BssECI	CCNNGG	2 cut(s)	183, 208
BssHII	GCGCGC	1 cut(s)	41
BssMI	GATC	2 cut(s)	53, 289
BssSI	CACGAG	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	183
Bst2BI	CACGAG	1 cut(s)	330
Bst2UI	CCWGG	2 cut(s)	195, 308
Bst6I	CTCTTC	2 cut(s)	245, 388
BstBAI	YACGTR	4 cut(s)	63, 67, 111, 433
BstC8I	GCNNGC	3 cut(s)	43, 121, 326
BstDEI	CTNAG	2 cut(s)	174, 375
BstDSI	CCRYGG	1 cut(s)	208
BstF5I	GGATG	1 cut(s)	355
BstFNI	CGCG	2 cut(s)	43, 45
BstHHI	GCGC	2 cut(s)	43, 45
BstKTI	GATC	2 cut(s)	56, 292
BstMBI	GATC	2 cut(s)	53, 289
BstMWI	GCNNNNNNNGC	3 cut(s)	321, 413, 422
BstNI	CCWGG	2 cut(s)	195, 308
BstSCI	CCNGG	2 cut(s)	193, 306
BstSNI	TACGTA	3 cut(s)	63, 67, 433
BstUI	CGCG	2 cut(s)	43, 45
BstV1I	GCAGC	1 cut(s)	383
BstV2I	GAAGAC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BsuI	GTATCC	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	336, 358
BtgI	CCRYGG	1 cut(s)	208
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	355
BtsIMutI	CAGTG	1 cut(s)	171
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	3 cut(s)	43, 121, 326
CfoI	GCGC	2 cut(s)	43, 45
Cfr13I	GGNCC	1 cut(s)	356
CsiI	ACCWGGT	1 cut(s)	193
Csp6I	GTAC	8 cut(s)	64, 68, 102, 112, 379, 393, 399, 430
CviAII	CATG	1 cut(s)	274
CviQI	GTAC	8 cut(s)	64, 68, 102, 112, 379, 393, 399, 430
DdeI	CTNAG	2 cut(s)	174, 375
DpnI	GATC	2 cut(s)	55, 291
DpnII	GATC	2 cut(s)	53, 289
EaeI	YGGCCR	1 cut(s)	334
Eam1104I	CTCTTC	2 cut(s)	245, 388
EarI	CTCTTC	2 cut(s)	245, 388
Ecl136II	GAGCTC	1 cut(s)	255
Eco105I	TACGTA	3 cut(s)	63, 67, 433
Eco130I	CCWWGG	1 cut(s)	183
Eco24I	GRGCYC	2 cut(s)	121, 257
Eco53kI	GAGCTC	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	255
EcoRII	CCWGG	2 cut(s)	193, 306
EcoT14I	CCWWGG	1 cut(s)	183
EcoT38I	GRGCYC	2 cut(s)	121, 257
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	1 cut(s)	277
FaiI	YATR	4 cut(s)	13, 152, 275, 445
FatI	CATG	1 cut(s)	273
FauI	CCCGC	1 cut(s)	38
Fnu4HI	GCNGC	1 cut(s)	372
FokI	GGATG	1 cut(s)	362
FriOI	GRGCYC	2 cut(s)	121, 257
Fsp4HI	GCNGC	1 cut(s)	372
GlaI	GCGC	2 cut(s)	42, 44
GluI	GCNGC	1 cut(s)	372
HaeIII	GGCC	2 cut(s)	336, 358
HapII	CCGG	1 cut(s)	124
HhaI	GCGC	2 cut(s)	43, 45
Hin1II	CATG	1 cut(s)	277
Hin6I	GCGC	2 cut(s)	41, 43
HinP1I	GCGC	2 cut(s)	41, 43
HpaII	CCGG	1 cut(s)	124
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	2 cut(s)	58, 239
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	1 cut(s)	364
HpyCH4IV	ACGT	6 cut(s)	62, 66, 110, 135, 265, 432
HpyCH4V	TGCA	2 cut(s)	26, 425
HpyF10VI	GCNNNNNNNGC	3 cut(s)	321, 413, 422
HpyF3I	CTNAG	2 cut(s)	174, 375
HpySE526I	ACGT	6 cut(s)	62, 66, 110, 135, 265, 432
Hsp92II	CATG	1 cut(s)	277
HspAI	GCGC	2 cut(s)	41, 43
Kzo9I	GATC	2 cut(s)	53, 289
LguI	GCTCTTC	1 cut(s)	245
Lsp1109I	GCAGC	1 cut(s)	383
MabI	ACCWGGT	1 cut(s)	193
MaeII	ACGT	6 cut(s)	62, 66, 110, 135, 265, 432
MalI	GATC	2 cut(s)	55, 291
MboI	GATC	2 cut(s)	53, 289
MboII	GAAGA	3 cut(s)	226, 262, 375
MflI	RGATCY	1 cut(s)	53
MhlI	GDGCHC	2 cut(s)	121, 257
MlsI	TGGCCA	1 cut(s)	336
MluCI	AATT	3 cut(s)	160, 344, 438
MluNI	TGGCCA	1 cut(s)	336
MnlI	CCTC	1 cut(s)	339
Mox20I	TGGCCA	1 cut(s)	336
MscI	TGGCCA	1 cut(s)	336
MseI	TTAA	2 cut(s)	75, 481
Msp20I	TGGCCA	1 cut(s)	336
MspI	CCGG	1 cut(s)	124
MspR9I	CCNGG	2 cut(s)	195, 308
MvaI	CCWGG	2 cut(s)	195, 308
MvnI	CGCG	2 cut(s)	43, 45
MwoI	GCNNNNNNNGC	3 cut(s)	321, 413, 422
NdeII	GATC	2 cut(s)	53, 289
NlaIII	CATG	1 cut(s)	277
PauI	GCGCGC	1 cut(s)	41
PciSI	GCTCTTC	1 cut(s)	245
Pfl23II	CGTACG	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	373
Ppu21I	YACGTR	4 cut(s)	63, 67, 111, 433
Psp124BI	GAGCTC	1 cut(s)	257
Psp6I	CCWGG	2 cut(s)	193, 306
PspGI	CCWGG	2 cut(s)	193, 306
PspLI	CGTACG	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	356
PsrI	GAACNNNNNNTAC	2 cut(s)	78, 110
PsuI	RGATCY	1 cut(s)	53
PteI	GCGCGC	1 cut(s)	41
RsaI	GTAC	8 cut(s)	65, 69, 103, 113, 380, 394, 400, 431
RsaNI	GTAC	8 cut(s)	64, 68, 102, 112, 379, 393, 399, 430
SacI	GAGCTC	1 cut(s)	257
SapI	GCTCTTC	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	75, 481
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	2 cut(s)	53, 289
Sau96I	GGNCC	1 cut(s)	356
ScaI	AGTACT	2 cut(s)	380, 400
ScrFI	CCNGG	2 cut(s)	195, 308
SduI	GDGCHC	2 cut(s)	121, 257
SexAI	ACCWGGT	1 cut(s)	193
SnaBI	TACGTA	3 cut(s)	63, 67, 433
Sse9I	AATT	3 cut(s)	160, 344, 438
SsiI	CCGC	1 cut(s)	45
SstI	GAGCTC	1 cut(s)	257
StyD4I	CCNGG	2 cut(s)	193, 306
StyI	CCWWGG	1 cut(s)	183
TaiI	ACGT	6 cut(s)	65, 69, 113, 138, 268, 435
TaqI	TCGA	2 cut(s)	257, 362
TasI	AATT	3 cut(s)	160, 344, 438
TatI	WGTACW	2 cut(s)	378, 398
Tru1I	TTAA	2 cut(s)	75, 481
Tru9I	TTAA	2 cut(s)	75, 481
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	1 cut(s)	371
TspDTI	ATGAA	4 cut(s)	173, 262, 263, 275
TspRI	CASTG	1 cut(s)	178
ZrmI	AGTACT	2 cut(s)	380, 400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.