Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001510

Physical Location & Seq

Genomic Coordinates Reverse (-)

4955527 .. 4957834

Gene Structure 2308 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1061900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTCAGCAAATGAAAGCATGGAGTTTAAGGACACTGAGCTCACCTTAGGGTTACCTGGTACGACGTCAGATTACAACCATCCTCGTGTCTTTGGAGGGTTCAACTTCAAGATAAGTAGTAGTAATAGCAGTTCGAAGAAACGTGGTTTCATGGATACCGTTGATCAAATTAGCCTGCACAAAAGCTCTGAAGCCAGCGAACCACTTGGCAGCTCATCATCTAGTAGTAGTTCTACAACAACTACCTCCGTCATCAAAGCCCCAGCTGCAAAAGCAAGAATAGTTGGGTGGCCGCCGGTAAGATCGATGAGACAGAAGGCGTTGGTGGTGGTGCGGAGCATCAGAAAGTATGTTAAAGTGAGCGCAGATGGAGCTCCTTATCTACGTAAACTAGACTTGGAGATGTACAGAAGTTATCAAGAGCTATTGAGAGCATTAGAGCGAATGTTCCCTTCCTTAACCATAAGTGGTAAGTGTATTGAGGATAGCAATGAGGTTATGAAACCTGCAGCGAAAGGAATGGATCAATATGTGTTGACATATGAAGACAAGGATGGAGACTGGATGTTAGTTGGAGACGTCCCTTGGAAGATGTTTATGGAATCATGCAAGCGTATTCGGTTGATGAAAAGTTCAGAAGCTGTTGGGATAGCTCCAAGGGCTCAGATTCCTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

226

Amino Acids

24.96

Weight (kDa)

9.35

Isoelectric Point (pI)

49.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	11 - 220	8.3e-61	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25510
fragaria_vesca	FvH4_1g04230 FvH4_1g04230 FvH4_1g04240 FvH4_1g04240 FvH4_2g30110
malus_domestica	MD02G1042300.v1.1 MD02G1042400.v1.1 MD02G1061700.v1.1 MD02G1061900.v1.1 MD08G1137200.v1.1 MD15G1115800.v1.1
prunus_persica	Prupe.1G467100_v2.0.a1 Prupe.1G467100_v2.0.a1 Prupe.1G467100_v2.0.a1 Prupe.7G234800_v2.0.a1 Prupe.7G234800_v2.0.a1 Prupe.7G234900_v2.0.a1 Prupe.7G234900_v2.0.a1
pyrus_communis	pycom02g03510 pycom08g11580 pycom15g10440 pycom15g16290 pycom15g16300
rosa_chinensis	RchiOBHm_Chr2g0089791 RchiOBHm_Chr2g0089801 RchiOBHm_Chr6g0312811
rosa_laevigata	RLG00000010296 RLG00000016055 RLG00000016056
rosa_multiflora	Rmu_sc0000665.1_g000009 Rmu_sc0008049.1_g000006
rosa_roxburghii	Rroxscaffold_2G00151610 Rroxscaffold_2G00151620 Rroxscaffold_7G00156470
rosa_rugosa	Rorug02G0003200 Rorug06G0399900
rosa_samantha	Rh2AG048400 Rh2AG048500 Rh2BG047200 Rh2BG047300 Rh2CG049300 Rh2CG049400 Rh2DG048700 Rh2DG048800 Rh6AG516900 Rh6BG528300 Rh6DG519500
rosa_wichuraiana	Rw2G004190 Rw2G004200 Rw6G044900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	68, 582
Acc36I	ACCTGC	1 cut(s)	514
AciI	CCGC	2 cut(s)	293, 334
AclWI	GGATC	1 cut(s)	531
AcoI	YGGCCR	1 cut(s)	290
AcuI	CTGAAG	1 cut(s)	210
AcyI	GRCGYC	2 cut(s)	65, 579
AfaI	GTAC	2 cut(s)	61, 407
AgsI	TTSAA	2 cut(s)	103, 109
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	8 cut(s)	40, 186, 213, 266, 374, 424, 641, 653
AluI	AGCT	8 cut(s)	40, 186, 213, 266, 374, 424, 641, 653
Alw21I	GWGCWC	2 cut(s)	42, 376
Alw26I	GTCTC	3 cut(s)	304, 552, 570
AlwI	GGATC	1 cut(s)	531
AlwNI	CAGNNNCTG	1 cut(s)	641
AoxI	GGCC	1 cut(s)	290
ApeKI	GCWGC	3 cut(s)	210, 266, 509
AspLEI	GCGC	1 cut(s)	365
AsuHPI	GGTGA	1 cut(s)	34
AsuII	TTCGAA	1 cut(s)	134
AxyI	CCTNAGG	1 cut(s)	46
BanII	GRGCYC	3 cut(s)	42, 376, 664
BauI	CACGAG	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	552
Bbv12I	GWGCWC	2 cut(s)	42, 376
BbvI	GCAGC	3 cut(s)	222, 253, 521
BccI	CCATC	3 cut(s)	87, 362, 548
BciT130I	CCWGG	1 cut(s)	57
BciVI	GTATCC	1 cut(s)	148
BclI	TGATCA	1 cut(s)	163
BcoDI	GTCTC	3 cut(s)	304, 552, 570
BfaI	CTAG	2 cut(s)	222, 392
BfmI	CTRYAG	1 cut(s)	507
BfuAI	ACCTGC	1 cut(s)	514
BfuI	GTATCC	1 cut(s)	148
BisI	GCNGC	4 cut(s)	211, 267, 293, 510
BlsI	GCNGC	4 cut(s)	212, 268, 294, 511
Bme1390I	CCNGG	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	348
BpiI	GAAGAC	1 cut(s)	552
Bpu14I	TTCGAA	1 cut(s)	134
Bsa29I	ATCGAT	1 cut(s)	305
BsaAI	YACGTR	1 cut(s)	386
BsaHI	GRCGYC	2 cut(s)	65, 579
BsaJI	CCNNGG	2 cut(s)	584, 656
Bse118I	RCCGGY	1 cut(s)	295
Bse1I	ACTGG	1 cut(s)	566
Bse21I	CCTNAGG	1 cut(s)	46
Bse3DI	GCAATG	1 cut(s)	496
BseBI	CCWGG	1 cut(s)	57
BseCI	ATCGAT	1 cut(s)	305
BseDI	CCNNGG	2 cut(s)	584, 656
BseGI	GGATG	3 cut(s)	79, 559, 570
BseMI	GCAATG	1 cut(s)	496
BseMII	CTCAG	2 cut(s)	27, 677
BseNI	ACTGG	1 cut(s)	566
BseXI	GCAGC	3 cut(s)	222, 253, 521
BseYI	CCCAGC	1 cut(s)	262
BsgI	GTGCAG	1 cut(s)	161
BshFI	GGCC	1 cut(s)	292
BshVI	ATCGAT	1 cut(s)	305
BsiHKAI	GWGCWC	2 cut(s)	42, 376
BsiSI	CCGG	1 cut(s)	296
BslFI	GGGAC	1 cut(s)	566
BsmAI	GTCTC	3 cut(s)	304, 552, 570
BsmBI	CGTCTC	1 cut(s)	570
BsmFI	GGGAC	1 cut(s)	566
BsnI	GGCC	1 cut(s)	292
Bsp119I	TTCGAA	1 cut(s)	134
Bsp1286I	GDGCHC	3 cut(s)	42, 376, 664
Bsp1407I	TGTACA	1 cut(s)	405
Bsp143I	GATC	3 cut(s)	163, 302, 523
BspACI	CCGC	2 cut(s)	293, 334
BspANI	GGCC	1 cut(s)	292
BspCNI	CTCAG	2 cut(s)	28, 676
BspDI	ATCGAT	1 cut(s)	305
BspMAI	CTGCAG	1 cut(s)	511
BspMI	ACCTGC	1 cut(s)	514
BspPI	GGATC	1 cut(s)	531
BspT104I	TTCGAA	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	496
BsrFI	RCCGGY	1 cut(s)	295
BsrGI	TGTACA	1 cut(s)	405
BsrI	ACTGG	1 cut(s)	566
BssAI	RCCGGY	1 cut(s)	295
BssECI	CCNNGG	2 cut(s)	584, 656
BssMI	GATC	3 cut(s)	163, 302, 523
BssNI	GRCGYC	2 cut(s)	65, 579
BssSI	CACGAG	1 cut(s)	84
BssT1I	CCWWGG	2 cut(s)	584, 656
Bst2BI	CACGAG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	160
BstACI	GRCGYC	2 cut(s)	65, 579
BstAUI	TGTACA	1 cut(s)	405
BstBAI	YACGTR	1 cut(s)	386
BstBI	TTCGAA	1 cut(s)	134
BstC8I	GCNNGC	3 cut(s)	176, 196, 611
BstDEI	CTNAG	3 cut(s)	36, 46, 663
BstEII	GGTNACC	1 cut(s)	51
BstF5I	GGATG	3 cut(s)	79, 559, 570
BstHHI	GCGC	1 cut(s)	365
BstKTI	GATC	3 cut(s)	166, 305, 526
BstMAI	GTCTC	3 cut(s)	304, 552, 570
BstMBI	GATC	3 cut(s)	163, 302, 523
BstMWI	GCNNNNNNNGC	4 cut(s)	266, 272, 371, 659
BstNI	CCWGG	1 cut(s)	57
BstPI	GGTNACC	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	507
BstSNI	TACGTA	1 cut(s)	386
BstV1I	GCAGC	3 cut(s)	222, 253, 521
BstV2I	GAAGAC	1 cut(s)	552
Bsu15I	ATCGAT	1 cut(s)	305
Bsu36I	CCTNAGG	1 cut(s)	46
BsuI	GTATCC	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	292
BsuTUI	ATCGAT	1 cut(s)	305
BtsCI	GGATG	3 cut(s)	79, 559, 570
BtsIMutI	CAGTG	1 cut(s)	33
BveI	ACCTGC	1 cut(s)	514
Cac8I	GCNNGC	3 cut(s)	176, 196, 611
CaiI	CAGNNNCTG	1 cut(s)	641
CfoI	GCGC	1 cut(s)	365
Cfr10I	RCCGGY	1 cut(s)	295
ClaI	ATCGAT	1 cut(s)	305
CsiI	ACCWGGT	1 cut(s)	55
Csp6I	GTAC	2 cut(s)	60, 406
CviAII	CATG	3 cut(s)	19, 151, 606
CviQI	GTAC	2 cut(s)	60, 406
DdeI	CTNAG	3 cut(s)	36, 46, 663
DpnI	GATC	3 cut(s)	165, 304, 525
DpnII	GATC	3 cut(s)	163, 302, 523
EaeI	YGGCCR	1 cut(s)	290
Ecl136II	GAGCTC	2 cut(s)	40, 374
Eco105I	TACGTA	1 cut(s)	386
Eco130I	CCWWGG	2 cut(s)	584, 656
Eco24I	GRGCYC	3 cut(s)	42, 376, 664
Eco53kI	GAGCTC	2 cut(s)	40, 374
Eco57I	CTGAAG	1 cut(s)	210
Eco81I	CCTNAGG	1 cut(s)	46
Eco91I	GGTNACC	1 cut(s)	51
EcoICRI	GAGCTC	2 cut(s)	40, 374
EcoO65I	GGTNACC	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	2 cut(s)	584, 656
EcoT38I	GRGCYC	3 cut(s)	42, 376, 664
ErhI	CCWWGG	2 cut(s)	584, 656
Esp3I	CGTCTC	1 cut(s)	570
FaeI	CATG	3 cut(s)	22, 154, 609
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	3 cut(s)	18, 150, 605
FauNDI	CATATG	1 cut(s)	541
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	4 cut(s)	211, 267, 293, 510
FokI	GGATG	3 cut(s)	66, 566, 577
FriOI	GRGCYC	3 cut(s)	42, 376, 664
Fsp4HI	GCNGC	4 cut(s)	211, 267, 293, 510
FspBI	CTAG	2 cut(s)	222, 392
GlaI	GCGC	1 cut(s)	364
GluI	GCNGC	4 cut(s)	211, 267, 293, 510
GsaI	CCCAGC	1 cut(s)	266
HaeIII	GGCC	1 cut(s)	292
HapII	CCGG	1 cut(s)	296
HhaI	GCGC	1 cut(s)	365
Hin1I	GRCGYC	2 cut(s)	65, 579
Hin1II	CATG	3 cut(s)	22, 154, 609
Hin6I	GCGC	1 cut(s)	363
HinP1I	GCGC	1 cut(s)	363
HincII	GTYRAC	1 cut(s)	537
HindII	GTYRAC	1 cut(s)	537
HinfI	GANTC	2 cut(s)	602, 667
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	2 cut(s)	389, 537
Hpy188I	TCNGA	5 cut(s)	70, 190, 344, 637, 666
Hpy188III	TCNNGA	3 cut(s)	109, 419, 675
Hpy8I	GTNNAC	2 cut(s)	389, 537
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	2 cut(s)	310, 462
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	4 cut(s)	65, 142, 385, 579
HpyCH4V	TGCA	4 cut(s)	178, 269, 509, 609
HpyF10VI	GCNNNNNNNGC	4 cut(s)	266, 272, 371, 659
HpyF3I	CTNAG	3 cut(s)	36, 46, 663
HpySE526I	ACGT	4 cut(s)	65, 142, 385, 579
Hsp92I	GRCGYC	2 cut(s)	65, 579
Hsp92II	CATG	3 cut(s)	22, 154, 609
HspAI	GCGC	1 cut(s)	363
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	3 cut(s)	163, 302, 523
LmnI	GCTCC	4 cut(s)	336, 371, 379, 658
LpnPI	CCDG	8 cut(s)	42, 69, 188, 208, 276, 309, 519, 547
Lsp1109I	GCAGC	3 cut(s)	222, 253, 521
LweI	GCATC	1 cut(s)	348
MabI	ACCWGGT	1 cut(s)	55
MaeI	CTAG	2 cut(s)	222, 392
MaeII	ACGT	4 cut(s)	65, 142, 385, 579
MaeIII	GTNAC	1 cut(s)	51
MalI	GATC	3 cut(s)	165, 304, 525
MboI	GATC	3 cut(s)	163, 302, 523
MboII	GAAGA	3 cut(s)	148, 557, 601
MhlI	GDGCHC	3 cut(s)	42, 376, 664
MluCI	AATT	1 cut(s)	168
MmeI	TCCRAC	1 cut(s)	553
MnlI	CCTC	5 cut(s)	89, 93, 256, 475, 487
MseI	TTAA	3 cut(s)	27, 354, 458
MslI	CAYNNNNRTG	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	1 cut(s)	296
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	4 cut(s)	266, 272, 371, 659
NdeI	CATATG	1 cut(s)	541
NdeII	GATC	3 cut(s)	163, 302, 523
NlaIII	CATG	3 cut(s)	22, 154, 609
NspV	TTCGAA	1 cut(s)	134
PfeI	GAWTC	2 cut(s)	602, 667
PkrI	GCNGC	4 cut(s)	212, 268, 294, 511
Ppu21I	YACGTR	1 cut(s)	386
Psp124BI	GAGCTC	2 cut(s)	42, 376
Psp6I	CCWGG	1 cut(s)	55
PspEI	GGTNACC	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	55
PsrI	GAACNNNNNNTAC	2 cut(s)	115, 147
PstI	CTGCAG	1 cut(s)	511
PstNI	CAGNNNCTG	1 cut(s)	641
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	2 cut(s)	61, 407
RsaNI	GTAC	2 cut(s)	60, 406
RseI	CAYNNNNRTG	1 cut(s)	84
SacI	GAGCTC	2 cut(s)	42, 376
SaqAI	TTAA	3 cut(s)	27, 354, 458
SatI	GCNGC	4 cut(s)	211, 267, 293, 510
Sau3AI	GATC	3 cut(s)	163, 302, 523
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	3 cut(s)	42, 376, 664
SexAI	ACCWGGT	1 cut(s)	55
SfaNI	GCATC	1 cut(s)	348
SfcI	CTRYAG	1 cut(s)	507
SfuI	TTCGAA	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	84
SnaBI	TACGTA	1 cut(s)	386
Sse9I	AATT	1 cut(s)	168
SsiI	CCGC	2 cut(s)	293, 334
SspMI	CTAG	2 cut(s)	222, 392
SstI	GAGCTC	2 cut(s)	42, 376
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	2 cut(s)	584, 656
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	4 cut(s)	68, 145, 388, 582
TaqI	TCGA	2 cut(s)	134, 305
TasI	AATT	1 cut(s)	168
TatI	WGTACW	1 cut(s)	405
TauI	GCSGC	1 cut(s)	295
TfiI	GAWTC	2 cut(s)	602, 667
Tru1I	TTAA	3 cut(s)	27, 354, 458
Tru9I	TTAA	3 cut(s)	27, 354, 458
TscAI	CASTG	1 cut(s)	40
TseI	GCWGC	3 cut(s)	210, 266, 509
TspDTI	ATGAA	5 cut(s)	27, 139, 515, 558, 641
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	1 cut(s)	40
XspI	CTAG	2 cut(s)	222, 392
ZraI	GACGTC	2 cut(s)	66, 580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.