Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0016204

Physical Location & Seq

Genomic Coordinates Reverse (-)

359588 .. 361752

Gene Structure 2165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010293

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1809 bp

ATGCCCTCACAGAAACCCCGCCATTTTCTCTCTCTGGCCCTCATCTTCTTCAAGCCAAACCCTAACCCTAACCCTAACTTTCGTATTCTTTCTCTTCGATCCTTGTCCGACCAATCATGGCTGTCCGTACCCGGAAACCCCCTAATCAAGTGGCCCTCGCTCTCACCGCCTCCATCTCTCCCTTCCCCTAACCCTAATTTTGACCCCAAATTTTCACAAAATGACTTGTCCGCAATCGCTAACCTGCTCGCCGACCCAAGCATCTCCCCCGGTCCTCCATCGCTGCGGACCGCATTGGACCGGGCCGGAATTGACCCGAGTCCGAGTCTGCTACAGGCTGTGTTCGACCACTTTGATTCGTCTCCCAAATTGCTGCACACGCTGTTTGTTTGGGCTGAGAAGCAGCCCGGGTTTCGATGCTCTGCGACGCTCTTCACCTCCATGATCAATGTGCTTGCCAAGGCTAGGGACTTTGAGTCTGCGTGGTCTATGATTCTTGATCGAATCGGCGGAGATAAGGAGCCTGGGTTGGTTTCTGTAGATGCATTTGTCATCATGATCAGACGGTATGCTCGTGCAGGTCAACCCCAATCAGCAATTCGAGCTTTTGAATTTGCAAGTACCTTAGAGTCATTTCTCAATTCTGAATCAGAAATGAGTTTGTTTGAAATCTTACTGGATTCCCTTTGTAAGGAGGGTCTTGTGAGGGTGGCCTCGGAATATTTTGATGGGAAAAGAAAGTTGCATCGAGATTGGATTCCATCGGTTCGGGTTTATAATATACTGTTGAATGGATGGTTTCGAGCGAGGAAGCTGAAGAAGGCAGAGCGGCTTTGGGTGGAGATGAAGAGAGACGGCGTGAAACCTAGTGTCGTGACATATGGTACACTTGTAGAAGGATACTGTCAGATGCGTCGTCCTGAAATCTCAATGGAGTTGGTGGGTGAGATGAGGAGGGAAGGAATTGAACCAAATGCGATTGTGTTTAATCCAATAATTGATGCTTTGGGGGAAGCTGGGAGGTTCAAGGAAGCGTGGGGGATGATGGAGCGGTTTTCAGTTCTGGAATCAGGCCCCACTATTTCGACGTACAATTCTCTGGTAAAGGGCTATTGCAAGGCCGGAAATCTTGTAGAAGCTAGTAGGATTATTAAGATGATGATAAGCAGGGGTATTGTACCAACTCCAACAACCTATAACTATTTCTTTAGGTTCTTTTCAAAGTCTGGGAAAATTGAGGAAGGAATGAACCTTTATACCAAAATGACTGAATCTGGATATACCCCAGATCATCTTACTTTCCATCTTCTGTTGAAGATGTTATGTGAAGAGGGAAGATTGGATTTGGCTGTTCAAGTTAGCAAGGAAATGAGAACTAGGGGATGTGATATGGATTTAGCCACGAGTACCATGTTGATTCATTTGCTCTGCAAGATGAATAAATTTAAAGAAGCTTTGTCAGAGTTTGAGGACATGATACGCAGGGGTTTAGTTCCGCAGTATCTAACTTTTCAGAATATGTATGATGAACTAAGGAAACAAGAAATGACTGAAATGGCACGAAAGCTGTGCGCCCTGATGTCTTCTGTTCCTCATTCAACAAAGTTGCCGAATACATATGTCAAAGATAGAGATAAATCGCATGCAAGGAGAAACTTTATAATTCATAAGGCTGAAGCGATGTCTAATGTGTTGAAAACTTGTTCAGATCCAAGAGAACTTGTTAAGCACAGAAGTTCGCCGGAGACTGTTGAATCAAGAGCAAACCAGTTAATAGAGAATATTAAGACAAAAGCTAACATTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009787 GO:0009788 GO:0009791 GO:0009845 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010646 GO:0010648 GO:0016070 GO:0016787 GO:0016788 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090351 GO:0097159 GO:1900140 GO:1901360 GO:1901363 GO:1901419 GO:1901420 GO:1905957 GO:1905958 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

603

Amino Acids

68.38

Weight (kDa)

9.26

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	254 - 303	5.3e-15	PPR repeat family
PPR_3	PF13812	254 - 298	2.4e-07	Pentatricopeptide repeat domain
PPR_3	PF13812	278 - 338	5e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	285 - 318	1.4e-07	PPR repeat
PPR_2	PF13041	289 - 336	2.5e-09	PPR repeat family
PPR_2	PF13041	359 - 406	1.8e-10	PPR repeat family
PPR_1	PF12854	359 - 387	4.5e-08	PPR repeat
PPR_3	PF13812	361 - 405	5.2e-06	Pentatricopeptide repeat domain
PPR	PF01535	362 - 392	2.9e-08	PPR repeat
TPR_24	PF23276	363 - 456	3.8e-06	Fungal tetratrico peptide repeats
PPR_long	PF17177	378 - 478	6.2e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	398 - 442	3.4e-08	PPR repeat family
PPR_2	PF13041	437 - 478	1.3e-07	PPR repeat family
PPR_2	PF13041	466 - 509	1e-05	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11310
fragaria_vesca	FvH4_2g30070
malus_domestica	MD08G1137400.v1.1
prunus_persica	Prupe.1G467400_v2.0.a1
pyrus_communis	pycom08g11630
rosa_chinensis	RchiOBHm_Chr6g0312841
rosa_laevigata	RLG00000010293
rosa_multiflora	Rmu_sc0008049.1_g000008
rosa_roxburghii	Rroxscaffold_7G00156440
rosa_rugosa	Rorug06G0399900
rosa_samantha	Rh6AG517200 Rh6BG528600 Rh6CG533300 Rh6DG519800
rosa_wichuraiana	Rw6G044930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	777, 1661
Acc36I	ACCTGC	2 cut(s)	252, 569
AccBSI	CCGCTC	2 cut(s)	829, 1051
AciI	CCGC	9 cut(s)	19, 167, 231, 286, 291, 510, 829, 1051, 1496
AclWI	GGATC	2 cut(s)	93, 1703
AcsI	RAATTY	3 cut(s)	209, 611, 1442
AcuI	CTGAAG	2 cut(s)	836, 1695
AfaI	GTAC	6 cut(s)	129, 622, 886, 1091, 1179, 1408
AfiI	CCNNNNNNNGG	2 cut(s)	465, 691
AhdI	GACNNNNNGTC	1 cut(s)	475
AjnI	CCWGG	1 cut(s)	523
AjuI	GAANNNNNNNTTGG	2 cut(s)	582, 614
AluBI	AGCT	7 cut(s)	605, 814, 1016, 1139, 1454, 1567, 1796
AluI	AGCT	7 cut(s)	605, 814, 1016, 1139, 1454, 1567, 1796
Alw26I	GTCTC	3 cut(s)	366, 846, 1739
AlwI	GGATC	2 cut(s)	93, 1703
Ama87I	CYCGRG	2 cut(s)	316, 407
AoxI	GGCC	6 cut(s)	36, 152, 303, 711, 1072, 1119
ApeKI	GCWGC	3 cut(s)	283, 373, 403
ApoI	RAATTY	3 cut(s)	209, 611, 1442
AspLEI	GCGC	1 cut(s)	1574
AspS9I	GGNCC	7 cut(s)	37, 153, 272, 288, 298, 303, 1073
AsuC2I	CCSGG	5 cut(s)	132, 270, 302, 408, 409
AsuHPI	GGTGA	3 cut(s)	156, 427, 956
AvaI	CYCGRG	2 cut(s)	316, 407
AvaII	GGWCC	3 cut(s)	272, 288, 298
BaeI	ACNNNNGTAYC	2 cut(s)	876, 909
BauI	CACGAG	2 cut(s)	573, 1402
BbsI	GAAGAC	1 cut(s)	1575
BbvI	GCAGC	3 cut(s)	270, 360, 415
BccI	CCATC	7 cut(s)	181, 286, 722, 769, 789, 1039, 1311
BceAI	ACGGC	1 cut(s)	871
BcgI	CGANNNNNNTGC	2 cut(s)	1551, 1585
BciT130I	CCWGG	1 cut(s)	525
BciVI	GTATCC	1 cut(s)	893
BclI	TGATCA	2 cut(s)	444, 558
BcnI	CCSGG	5 cut(s)	132, 270, 302, 408, 409
BcoDI	GTCTC	3 cut(s)	366, 846, 1739
BfaI	CTAG	4 cut(s)	465, 867, 1140, 1377
BfmI	CTRYAG	2 cut(s)	332, 537
BfuAI	ACCTGC	2 cut(s)	252, 569
BfuI	GTATCC	1 cut(s)	893
BisI	GCNGC	4 cut(s)	284, 374, 404, 830
BlsI	GCNGC	4 cut(s)	285, 375, 405, 831
Bme1390I	CCNGG	6 cut(s)	132, 270, 302, 408, 409, 525
Bme18I	GGWCC	3 cut(s)	272, 288, 298
BmeRI	GACNNNNNGTC	1 cut(s)	475
BmeT110I	CYCGRG	2 cut(s)	316, 407
BmgT120I	GGNCC	7 cut(s)	37, 153, 272, 288, 298, 303, 1073
BmiI	GGNNCC	2 cut(s)	522, 1075
BmrFI	CCNGG	6 cut(s)	132, 270, 302, 408, 409, 525
BmsI	GCATC	6 cut(s)	270, 407, 532, 754, 900, 991
BoxI	GACNNNNGTC	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	1575
BpuMI	CCSGG	5 cut(s)	132, 270, 302, 408, 409
BsaJI	CCNNGG	5 cut(s)	268, 407, 459, 524, 714
BsaXI	ACNNNNNCTCC	2 cut(s)	512, 542
Bsc4I	CCNNNNNNNGG	2 cut(s)	465, 691
Bse1I	ACTGG	2 cut(s)	681, 1768
BseBI	CCWGG	1 cut(s)	525
BseDI	CCNNGG	5 cut(s)	268, 407, 459, 524, 714
BseGI	GGATG	3 cut(s)	800, 1047, 1388
BseLI	CCNNNNNNNGG	2 cut(s)	465, 691
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	2 cut(s)	681, 1768
BseRI	GAGGAG	1 cut(s)	967
BseXI	GCAGC	3 cut(s)	270, 360, 415
BseYI	CCCAGC	1 cut(s)	1016
BsgI	GTGCAG	2 cut(s)	359, 597
BshFI	GGCC	6 cut(s)	38, 154, 305, 713, 1074, 1121
BsiHKCI	CYCGRG	2 cut(s)	316, 407
BsiSI	CCGG	7 cut(s)	132, 270, 301, 306, 408, 1122, 1742
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	2 cut(s)	465, 691
BsmAI	GTCTC	3 cut(s)	366, 846, 1739
BsmBI	CGTCTC	2 cut(s)	366, 846
BsmFI	GGGAC	1 cut(s)	482
BsnI	GGCC	6 cut(s)	38, 154, 305, 713, 1074, 1121
BsoBI	CYCGRG	2 cut(s)	316, 407
Bsp143I	GATC	6 cut(s)	98, 444, 499, 558, 1288, 1708
BspACI	CCGC	9 cut(s)	19, 167, 231, 286, 291, 510, 829, 1051, 1496
BspANI	GGCC	6 cut(s)	38, 154, 305, 713, 1074, 1121
BspCNI	CTCAG	1 cut(s)	388
BspHI	TCATGA	1 cut(s)	555
BspLI	GGNNCC	2 cut(s)	522, 1075
BspMI	ACCTGC	2 cut(s)	252, 569
BspPI	GGATC	2 cut(s)	93, 1703
BspQI	GCTCTTC	1 cut(s)	437
BsrBI	CCGCTC	2 cut(s)	829, 1051
BsrI	ACTGG	2 cut(s)	681, 1768
BssECI	CCNNGG	5 cut(s)	268, 407, 459, 524, 714
BssMI	GATC	6 cut(s)	98, 444, 499, 558, 1288, 1708
BssSI	CACGAG	2 cut(s)	573, 1402
BssT1I	CCWWGG	1 cut(s)	459
Bst2BI	CACGAG	2 cut(s)	573, 1402
Bst2UI	CCWGG	1 cut(s)	525
Bst4CI	ACNGT	4 cut(s)	567, 786, 905, 1750
Bst6I	CTCTTC	4 cut(s)	99, 437, 842, 1323
BstC8I	GCNNGC	3 cut(s)	249, 456, 1644
BstDEI	CTNAG	3 cut(s)	396, 625, 1532
BstENI	CCTNNNNNAGG	1 cut(s)	689
BstF5I	GGATG	3 cut(s)	800, 1047, 1388
BstHHI	GCGC	1 cut(s)	1574
BstKTI	GATC	6 cut(s)	101, 447, 502, 561, 1291, 1711
BstMAI	GTCTC	3 cut(s)	366, 846, 1739
BstMBI	GATC	6 cut(s)	98, 444, 499, 558, 1288, 1708
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 379, 602
BstNI	CCWGG	1 cut(s)	525
BstNSI	RCATGY	1 cut(s)	1646
BstPAI	GACNNNNGTC	1 cut(s)	318
BstSCI	CCNGG	6 cut(s)	130, 268, 300, 406, 407, 523
BstSFI	CTRYAG	2 cut(s)	332, 537
BstV1I	GCAGC	3 cut(s)	270, 360, 415
BstV2I	GAAGAC	1 cut(s)	1575
BstX2I	RGATCY	1 cut(s)	1708
BstYI	RGATCY	1 cut(s)	1708
BsuI	GTATCC	1 cut(s)	893
BsuRI	GGCC	6 cut(s)	38, 154, 305, 713, 1074, 1121
BtgZI	GCGATG	2 cut(s)	264, 1694
BtsCI	GGATG	3 cut(s)	800, 1047, 1388
BveI	ACCTGC	2 cut(s)	252, 569
Cac8I	GCNNGC	3 cut(s)	249, 456, 1644
CciI	TCATGA	1 cut(s)	555
CfoI	GCGC	1 cut(s)	1574
Cfr13I	GGNCC	7 cut(s)	37, 153, 272, 288, 298, 303, 1073
Cfr9I	CCCGGG	1 cut(s)	407
CpoI	CGGWCCG	1 cut(s)	288
CseI	GACGC	2 cut(s)	436, 902
Csp6I	GTAC	6 cut(s)	128, 621, 885, 1090, 1178, 1407
CspI	CGGWCCG	1 cut(s)	288
CviAII	CATG	6 cut(s)	117, 442, 556, 1411, 1474, 1643
CviQI	GTAC	6 cut(s)	128, 621, 885, 1090, 1178, 1407
DdeI	CTNAG	3 cut(s)	396, 625, 1532
DpnI	GATC	6 cut(s)	100, 446, 501, 560, 1290, 1710
DpnII	GATC	6 cut(s)	98, 444, 499, 558, 1288, 1708
DraI	TTTAAA	1 cut(s)	1447
DriI	GACNNNNNGTC	1 cut(s)	475
Eam1104I	CTCTTC	4 cut(s)	99, 437, 842, 1323
Eam1105I	GACNNNNNGTC	1 cut(s)	475
EarI	CTCTTC	4 cut(s)	99, 437, 842, 1323
EciI	GGCGGA	1 cut(s)	525
Eco130I	CCWWGG	1 cut(s)	459
Eco47I	GGWCC	3 cut(s)	272, 288, 298
Eco57I	CTGAAG	2 cut(s)	836, 1695
Eco88I	CYCGRG	2 cut(s)	316, 407
EcoNI	CCTNNNNNAGG	1 cut(s)	689
EcoO109I	RGGNCCY	1 cut(s)	1073
EcoRII	CCWGG	1 cut(s)	523
EcoT14I	CCWWGG	1 cut(s)	459
EcoT22I	ATGCAT	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	459
Esp3I	CGTCTC	2 cut(s)	366, 846
FaeI	CATG	6 cut(s)	120, 445, 559, 1414, 1477, 1646
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	6 cut(s)	116, 441, 555, 1410, 1473, 1642
FauI	CCCGC	1 cut(s)	26
FauNDI	CATATG	2 cut(s)	880, 1618
FbaI	TGATCA	2 cut(s)	444, 558
Fnu4HI	GCNGC	4 cut(s)	284, 374, 404, 830
FokI	GGATG	3 cut(s)	807, 1054, 1395
Fsp4HI	GCNGC	4 cut(s)	284, 374, 404, 830
FspBI	CTAG	4 cut(s)	465, 867, 1140, 1377
GlaI	GCGC	1 cut(s)	1573
GluI	GCNGC	4 cut(s)	284, 374, 404, 830
GsaI	CCCAGC	1 cut(s)	1020
HaeIII	GGCC	6 cut(s)	38, 154, 305, 713, 1074, 1121
HapII	CCGG	7 cut(s)	132, 270, 301, 306, 408, 1122, 1742
HgaI	GACGC	2 cut(s)	436, 902
HhaI	GCGC	1 cut(s)	1574
Hin1II	CATG	6 cut(s)	120, 445, 559, 1414, 1477, 1646
Hin6I	GCGC	1 cut(s)	1572
HinP1I	GCGC	1 cut(s)	1572
HincII	GTYRAC	1 cut(s)	584
HindII	GTYRAC	1 cut(s)	584
HindIII	AAGCTT	1 cut(s)	1452
HpaII	CCGG	7 cut(s)	132, 270, 301, 306, 408, 1122, 1742
HphI	GGTGA	3 cut(s)	156, 427, 956
Hpy166II	GTNNAC	2 cut(s)	584, 887
Hpy188III	TCNNGA	8 cut(s)	497, 556, 749, 874, 920, 1064, 1275, 1758
Hpy8I	GTNNAC	2 cut(s)	584, 887
Hpy99I	CGWCG	3 cut(s)	430, 918, 1090
HpyAV	CCTTC	5 cut(s)	192, 814, 890, 953, 1235
HpyCH4III	ACNGT	4 cut(s)	567, 786, 905, 1750
HpyCH4IV	ACGT	1 cut(s)	1088
HpyCH4V	TGCA	8 cut(s)	376, 545, 578, 617, 745, 1116, 1431, 1646
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 379, 602
HpyF3I	CTNAG	3 cut(s)	396, 625, 1532
HpySE526I	ACGT	1 cut(s)	1088
Hsp92II	CATG	6 cut(s)	120, 445, 559, 1414, 1477, 1646
HspAI	GCGC	1 cut(s)	1572
Ksp22I	TGATCA	2 cut(s)	444, 558
Kzo9I	GATC	6 cut(s)	98, 444, 499, 558, 1288, 1708
LguI	GCTCTTC	1 cut(s)	437
LmnI	GCTCC	2 cut(s)	520, 1048
Lsp1109I	GCAGC	3 cut(s)	270, 360, 415
LweI	GCATC	6 cut(s)	270, 407, 532, 754, 900, 991
MaeI	CTAG	4 cut(s)	465, 867, 1140, 1377
MaeII	ACGT	1 cut(s)	1088
MaeIII	GTNAC	1 cut(s)	874
MalI	GATC	6 cut(s)	100, 446, 501, 560, 1290, 1710
MbiI	CCGCTC	2 cut(s)	829, 1051
MboI	GATC	6 cut(s)	98, 444, 499, 558, 1288, 1708
MflI	RGATCY	1 cut(s)	1708
MlyI	GAGTC	4 cut(s)	328, 334, 485, 638
MmeI	TCCRAC	2 cut(s)	132, 1211
Mph1103I	ATGCAT	1 cut(s)	547
MseI	TTAA	7 cut(s)	987, 1152, 1446, 1725, 1772, 1785, 1803
MslI	CAYNNNNRTG	1 cut(s)	440
MspI	CCGG	7 cut(s)	132, 270, 301, 306, 408, 1122, 1742
MspR9I	CCNGG	6 cut(s)	132, 270, 302, 408, 409, 525
MvaI	CCWGG	1 cut(s)	525
MwoI	GCNNNNNNNGC	3 cut(s)	166, 379, 602
NciI	CCSGG	5 cut(s)	132, 270, 302, 408, 409
NdeI	CATATG	2 cut(s)	880, 1618
NdeII	GATC	6 cut(s)	98, 444, 499, 558, 1288, 1708
NlaIII	CATG	6 cut(s)	120, 445, 559, 1414, 1477, 1646
NlaIV	GGNNCC	2 cut(s)	522, 1075
NmuCI	GTSAC	1 cut(s)	874
NsiI	ATGCAT	1 cut(s)	547
NspI	RCATGY	1 cut(s)	1646
PaeI	GCATGC	1 cut(s)	1646
PagI	TCATGA	1 cut(s)	555
PciSI	GCTCTTC	1 cut(s)	437
PcsI	WCGNNNNNNNCGW	1 cut(s)	571
PkrI	GCNGC	4 cut(s)	285, 375, 405, 831
PleI	GAGTC	4 cut(s)	327, 333, 484, 637
PpsI	GAGTC	4 cut(s)	327, 333, 484, 637
PshAI	GACNNNNGTC	1 cut(s)	318
PsiI	TTATAA	2 cut(s)	777, 1661
Psp6I	CCWGG	1 cut(s)	523
PspFI	CCCAGC	1 cut(s)	1016
PspGI	CCWGG	1 cut(s)	523
PspN4I	GGNNCC	2 cut(s)	522, 1075
PspPI	GGNCC	7 cut(s)	37, 153, 272, 288, 298, 303, 1073
PsuI	RGATCY	1 cut(s)	1708
RsaI	GTAC	6 cut(s)	129, 622, 886, 1091, 1179, 1408
RsaNI	GTAC	6 cut(s)	128, 621, 885, 1090, 1178, 1407
RseI	CAYNNNNRTG	1 cut(s)	440
Rsr2I	CGGWCCG	1 cut(s)	288
RsrII	CGGWCCG	1 cut(s)	288
SapI	GCTCTTC	1 cut(s)	437
SaqAI	TTAA	7 cut(s)	987, 1152, 1446, 1725, 1772, 1785, 1803
SatI	GCNGC	4 cut(s)	284, 374, 404, 830
Sau3AI	GATC	6 cut(s)	98, 444, 499, 558, 1288, 1708
Sau96I	GGNCC	7 cut(s)	37, 153, 272, 288, 298, 303, 1073
SchI	GAGTC	4 cut(s)	328, 334, 485, 638
ScrFI	CCNGG	6 cut(s)	132, 270, 302, 408, 409, 525
SfaNI	GCATC	6 cut(s)	270, 407, 532, 754, 900, 991
SfcI	CTRYAG	2 cut(s)	332, 537
SinI	GGWCC	3 cut(s)	272, 288, 298
SmaI	CCCGGG	1 cut(s)	409
SmiMI	CAYNNNNRTG	1 cut(s)	440
SphI	GCATGC	1 cut(s)	1646
SsiI	CCGC	9 cut(s)	19, 167, 231, 286, 291, 510, 829, 1051, 1496
SspI	AATATT	2 cut(s)	722, 1783
SspMI	CTAG	4 cut(s)	465, 867, 1140, 1377
StyD4I	CCNGG	6 cut(s)	130, 268, 300, 406, 407, 523
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	4 cut(s)	567, 786, 905, 1750
TaiI	ACGT	1 cut(s)	1091
TaqI	TCGA	8 cut(s)	97, 345, 415, 502, 601, 748, 802, 1085
TauI	GCSGC	1 cut(s)	832
Tru1I	TTAA	7 cut(s)	987, 1152, 1446, 1725, 1772, 1785, 1803
Tru9I	TTAA	7 cut(s)	987, 1152, 1446, 1725, 1772, 1785, 1803
TseFI	GTSAC	1 cut(s)	874
TseI	GCWGC	3 cut(s)	283, 373, 403
Tsp45I	GTSAC	1 cut(s)	874
TspDTI	ATGAA	6 cut(s)	860, 1262, 1409, 1451, 1542, 1655
TspGWI	ACGGA	1 cut(s)	115
TspMI	CCCGGG	1 cut(s)	407
VpaK11BI	GGWCC	3 cut(s)	272, 288, 298
XagI	CCTNNNNNAGG	1 cut(s)	689
XapI	RAATTY	3 cut(s)	209, 611, 1442
XceI	RCATGY	1 cut(s)	1646
XmaI	CCCGGG	1 cut(s)	407
XspI	CTAG	4 cut(s)	465, 867, 1140, 1377
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.