Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0016204

Physical Location & Seq

Genomic Coordinates Forward (+)

68601161 .. 68602889

Gene Structure 1729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG533300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGTCAATGTGCTTGCCAAGGCTAGGGACTTTGAGTCTGCGTGGTCTATGATTCTTGATCGAATCGGCGGAGATAAGGAGCCTGGGTTGGTTTCTGTAGATGCATTTGTCATCATGATCAGACGGTATGCTCGTGCAGGTCAACCCCAATCAGCAATTCGAGCTTTTGAATTTGCAAGTACCTTAGAGTCATTTCTCAATTCTGAATCAGAAATGAGTTTGTTTGGAATCTTACTGGATTCCCTTTGTAAGGAGGGTCTTGTGAGGGTGGCCTCGGAATATTTTGATGGGAAAAGAAAGTTGCATCGAGATTGGATTCCATCGGTTCGGGTTTATAATATACTGTTGAATGGATGGTTTCGAGTGAGGAAGCTGAAGAAGGCAGAGCGGCTTTGGGTGGAGATGAAGAGAGACGGCGTGAAACCTAGTGTCGTGACATATGGTACACTTGTAGAAGGATACTGTCGGATGCGTCGTCCTGAAATCTCAATGGAGTTGGTGGGTGAGATGAGGAGGGAAGGAATTGAACCAAATGCGATTGTGTTTAATCCAATAATTGATGCTTTGGGGGAAGCCGGGAGGTTCAAGGAAGCGTGGGGGATGATGGAGCGGTTTTCAGTTCTGGAATCAGGCCCCACTATTTCGACGTACAATTCTCTGGTAAAGGGCTATTGCAAGGCCGGAAATCTTGTAGAAGCTAGTAGGATTATTAAGATGATGATAAGCAGGGGTATTGTACCAACTCCAACAACCTATAACTATTTCTTTAGGTTCTTTTCAAAGTCTGGGAAAAATGAGGAAGGAATGAACCTTTATACCAAAATGATTGAATCTGGGTATACCCCAGATCGTCTTACTTTCCATCTTCTGTTGAAGATGTTATGTGAAGAGGGAAGATTGGATTTGGCTGTTCAAGTTAGCAAGGAAATGAGAACTAGGGGATGTGATATGGATTTAGCCACGAGTACCATGTTGATTCATTTGCTCTGCAAGATGAATAAATTTAAAGAAGCTTTGTCAGAGTTTGAGGACATGATATGCAGGGGTTTAGTTCCGCAGTATCTAACTTTTCAGAACATGTATGATGAACTAAGGAAACAAGGAATGACTGAAATGGCACGAAAGCTGTGCGCCCTGATGTCTTCTGTTCCTCATTCAACAAAGTTGCCGAATACATATGTCAAAGATAGAGATGAATCTCATGCAAGGAGAAAATCTATAATTCAGAAGGCTGAAGCAATGTCTAATGTGTTGAAAACTTGTTCAGATCCAAGAGAACTTGTTAAGCACAGAAGTTCGCCGGAGACTGTTGAATCAAGAGCAAACCAGTTAATAGAGAATATTAAGACAAAAGCTAACATTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009787 GO:0009788 GO:0009791 GO:0009845 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010646 GO:0010648 GO:0016070 GO:0016787 GO:0016788 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090351 GO:0097159 GO:1900140 GO:1901360 GO:1901363 GO:1901419 GO:1901420 GO:1905957 GO:1905958 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

455

Amino Acids

52.08

Weight (kDa)

9.25

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	107 - 156	4.2e-15	PPR repeat family
PPR_3	PF13812	107 - 151	1.4e-07	Pentatricopeptide repeat domain
PPR_3	PF13812	131 - 191	4.4e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	138 - 171	3.3e-08	PPR repeat
PPR_2	PF13041	142 - 189	1.4e-09	PPR repeat family
PPR	PF01535	145 - 175	7e-06	PPR repeat
PPR_2	PF13041	212 - 259	1.2e-10	PPR repeat family
PPR_1	PF12854	212 - 240	3.2e-08	PPR repeat
PPR_3	PF13812	214 - 258	3.7e-06	Pentatricopeptide repeat domain
PPR	PF01535	215 - 245	2.1e-08	PPR repeat
PPR_2	PF13041	251 - 295	2.4e-07	PPR repeat family
PPR_2	PF13041	287 - 331	3.9e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11310
fragaria_vesca	FvH4_2g30070
malus_domestica	MD08G1137400.v1.1
prunus_persica	Prupe.1G467400_v2.0.a1
pyrus_communis	pycom08g11630
rosa_chinensis	RchiOBHm_Chr6g0312841
rosa_laevigata	RLG00000010293
rosa_multiflora	Rmu_sc0008049.1_g000008
rosa_roxburghii	Rroxscaffold_7G00156440
rosa_rugosa	Rorug06G0399900
rosa_samantha	Rh6AG517200 Rh6BG528600 Rh6CG533300 Rh6DG519800
rosa_wichuraiana	Rw6G044930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	336
Acc36I	ACCTGC	1 cut(s)	128
AccBSI	CCGCTC	2 cut(s)	388, 610
AccI	GTMKAC	1 cut(s)	839
AciI	CCGC	4 cut(s)	69, 388, 610, 1055
AclWI	GGATC	1 cut(s)	1262
AcsI	RAATTY	2 cut(s)	170, 1001
AcuI	CTGAAG	2 cut(s)	395, 1254
AfaI	GTAC	5 cut(s)	181, 445, 650, 738, 967
AfiI	CCNNNNNNNGG	2 cut(s)	24, 250
AflIII	ACRYGT	1 cut(s)	1077
AhdI	GACNNNNNGTC	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	82
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AluBI	AGCT	6 cut(s)	164, 373, 698, 1013, 1126, 1355
AluI	AGCT	6 cut(s)	164, 373, 698, 1013, 1126, 1355
Alw26I	GTCTC	2 cut(s)	405, 1298
AlwI	GGATC	1 cut(s)	1262
AoxI	GGCC	3 cut(s)	270, 631, 678
ApoI	RAATTY	2 cut(s)	170, 1001
AspLEI	GCGC	1 cut(s)	1133
AspS9I	GGNCC	1 cut(s)	632
AsuC2I	CCSGG	1 cut(s)	577
AsuHPI	GGTGA	1 cut(s)	515
BaeI	ACNNNNGTAYC	2 cut(s)	435, 468
BauI	CACGAG	2 cut(s)	132, 961
BbsI	GAAGAC	1 cut(s)	1134
BccI	CCATC	5 cut(s)	281, 328, 348, 598, 870
BceAI	ACGGC	1 cut(s)	430
BcgI	CGANNNNNNTGC	2 cut(s)	1110, 1144
BciT130I	CCWGG	1 cut(s)	84
BciVI	GTATCC	1 cut(s)	452
BclI	TGATCA	1 cut(s)	117
BcnI	CCSGG	1 cut(s)	577
BcoDI	GTCTC	2 cut(s)	405, 1298
BfaI	CTAG	4 cut(s)	24, 426, 699, 936
BfmI	CTRYAG	1 cut(s)	96
BfuAI	ACCTGC	1 cut(s)	128
BfuI	GTATCC	1 cut(s)	452
BisI	GCNGC	1 cut(s)	389
BlsI	GCNGC	1 cut(s)	390
Bme1390I	CCNGG	2 cut(s)	84, 577
BmeRI	GACNNNNNGTC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	632
BmiI	GGNNCC	2 cut(s)	81, 634
BmrFI	CCNGG	2 cut(s)	84, 577
BmsI	GCATC	4 cut(s)	91, 313, 459, 550
BpiI	GAAGAC	1 cut(s)	1134
BpuMI	CCSGG	1 cut(s)	577
BsaJI	CCNNGG	3 cut(s)	18, 83, 273
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 250
Bse1I	ACTGG	2 cut(s)	240, 1327
Bse3DI	GCAATG	1 cut(s)	1245
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	3 cut(s)	18, 83, 273
BseGI	GGATG	4 cut(s)	359, 474, 606, 947
BseLI	CCNNNNNNNGG	2 cut(s)	24, 250
BseMI	GCAATG	1 cut(s)	1245
BseNI	ACTGG	2 cut(s)	240, 1327
BseRI	GAGGAG	1 cut(s)	526
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	3 cut(s)	272, 633, 680
BsiSI	CCGG	3 cut(s)	576, 681, 1301
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	2 cut(s)	24, 250
BsmAI	GTCTC	2 cut(s)	405, 1298
BsmBI	CGTCTC	1 cut(s)	405
BsmFI	GGGAC	1 cut(s)	41
BsnI	GGCC	3 cut(s)	272, 633, 680
Bsp143I	GATC	4 cut(s)	58, 117, 847, 1267
BspACI	CCGC	4 cut(s)	69, 388, 610, 1055
BspANI	GGCC	3 cut(s)	272, 633, 680
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	81, 634
BspMI	ACCTGC	1 cut(s)	128
BspPI	GGATC	1 cut(s)	1262
BsrBI	CCGCTC	2 cut(s)	388, 610
BsrDI	GCAATG	1 cut(s)	1245
BsrI	ACTGG	2 cut(s)	240, 1327
BssECI	CCNNGG	3 cut(s)	18, 83, 273
BssMI	GATC	4 cut(s)	58, 117, 847, 1267
BssNAI	GTATAC	1 cut(s)	840
BssSI	CACGAG	2 cut(s)	132, 961
BssT1I	CCWWGG	1 cut(s)	18
Bst1107I	GTATAC	1 cut(s)	840
Bst2BI	CACGAG	2 cut(s)	132, 961
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	4 cut(s)	126, 345, 464, 1309
Bst6I	CTCTTC	2 cut(s)	401, 882
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	2 cut(s)	184, 1091
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstF5I	GGATG	4 cut(s)	359, 474, 606, 947
BstHHI	GCGC	1 cut(s)	1133
BstKTI	GATC	4 cut(s)	61, 120, 850, 1270
BstMAI	GTCTC	2 cut(s)	405, 1298
BstMBI	GATC	4 cut(s)	58, 117, 847, 1267
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	1 cut(s)	84
BstNSI	RCATGY	1 cut(s)	1081
BstSCI	CCNGG	2 cut(s)	82, 575
BstSFI	CTRYAG	1 cut(s)	96
BstV2I	GAAGAC	1 cut(s)	1134
BstX2I	RGATCY	1 cut(s)	1267
BstYI	RGATCY	1 cut(s)	1267
BstZ17I	GTATAC	1 cut(s)	840
BsuI	GTATCC	1 cut(s)	452
BsuRI	GGCC	3 cut(s)	272, 633, 680
BtsCI	GGATG	4 cut(s)	359, 474, 606, 947
BveI	ACCTGC	1 cut(s)	128
Cac8I	GCNNGC	1 cut(s)	15
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	1 cut(s)	1133
Cfr13I	GGNCC	1 cut(s)	632
CseI	GACGC	1 cut(s)	461
Csp6I	GTAC	5 cut(s)	180, 444, 649, 737, 966
CviAII	CATG	5 cut(s)	115, 970, 1033, 1078, 1202
CviQI	GTAC	5 cut(s)	180, 444, 649, 737, 966
DdeI	CTNAG	2 cut(s)	184, 1091
DpnI	GATC	4 cut(s)	60, 119, 849, 1269
DpnII	GATC	4 cut(s)	58, 117, 847, 1267
DraI	TTTAAA	1 cut(s)	1006
DriI	GACNNNNNGTC	1 cut(s)	34
Eam1104I	CTCTTC	2 cut(s)	401, 882
Eam1105I	GACNNNNNGTC	1 cut(s)	34
EarI	CTCTTC	2 cut(s)	401, 882
EciI	GGCGGA	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	18
Eco57I	CTGAAG	2 cut(s)	395, 1254
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	632
EcoRII	CCWGG	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	18
EcoT22I	ATGCAT	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	405
FaeI	CATG	5 cut(s)	118, 973, 1036, 1081, 1205
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	5 cut(s)	114, 969, 1032, 1077, 1201
FauNDI	CATATG	2 cut(s)	439, 1177
FbaI	TGATCA	1 cut(s)	117
FblI	GTMKAC	1 cut(s)	839
Fnu4HI	GCNGC	1 cut(s)	389
FokI	GGATG	4 cut(s)	366, 481, 613, 954
Fsp4HI	GCNGC	1 cut(s)	389
FspBI	CTAG	4 cut(s)	24, 426, 699, 936
GlaI	GCGC	1 cut(s)	1132
GluI	GCNGC	1 cut(s)	389
HaeIII	GGCC	3 cut(s)	272, 633, 680
HapII	CCGG	3 cut(s)	576, 681, 1301
HgaI	GACGC	1 cut(s)	461
HhaI	GCGC	1 cut(s)	1133
Hin1II	CATG	5 cut(s)	118, 973, 1036, 1081, 1205
Hin6I	GCGC	1 cut(s)	1131
HinP1I	GCGC	1 cut(s)	1131
HincII	GTYRAC	1 cut(s)	143
HindII	GTYRAC	1 cut(s)	143
HindIII	AAGCTT	1 cut(s)	1011
HpaII	CCGG	3 cut(s)	576, 681, 1301
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	3 cut(s)	143, 446, 840
Hpy188I	TCNGA	9 cut(s)	122, 205, 211, 277, 468, 1021, 1074, 1227, 1267
Hpy188III	TCNNGA	7 cut(s)	56, 115, 308, 433, 479, 623, 1317
Hpy8I	GTNNAC	3 cut(s)	143, 446, 840
Hpy99I	CGWCG	2 cut(s)	477, 649
HpyAV	CCTTC	5 cut(s)	373, 449, 512, 794, 1222
HpyCH4III	ACNGT	4 cut(s)	126, 345, 464, 1309
HpyCH4IV	ACGT	1 cut(s)	647
HpyCH4V	TGCA	8 cut(s)	104, 137, 176, 304, 675, 990, 1041, 1205
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	2 cut(s)	184, 1091
HpySE526I	ACGT	1 cut(s)	647
Hsp92II	CATG	5 cut(s)	118, 973, 1036, 1081, 1205
HspAI	GCGC	1 cut(s)	1131
Ksp22I	TGATCA	1 cut(s)	117
Kzo9I	GATC	4 cut(s)	58, 117, 847, 1267
LmnI	GCTCC	2 cut(s)	79, 607
LweI	GCATC	4 cut(s)	91, 313, 459, 550
MaeI	CTAG	4 cut(s)	24, 426, 699, 936
MaeII	ACGT	1 cut(s)	647
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	4 cut(s)	60, 119, 849, 1269
MbiI	CCGCTC	2 cut(s)	388, 610
MboI	GATC	4 cut(s)	58, 117, 847, 1267
MboII	GAAGA	7 cut(s)	388, 418, 857, 886, 899, 906, 1134
MflI	RGATCY	1 cut(s)	1267
MluCI	AATT	8 cut(s)	156, 170, 199, 522, 555, 652, 1001, 1221
MlyI	GAGTC	2 cut(s)	44, 197
MmeI	TCCRAC	2 cut(s)	446, 770
Mph1103I	ATGCAT	1 cut(s)	106
MseI	TTAA	7 cut(s)	546, 711, 1005, 1284, 1331, 1344, 1362
MspI	CCGG	3 cut(s)	576, 681, 1301
MspR9I	CCNGG	2 cut(s)	84, 577
MvaI	CCWGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	161
NciI	CCSGG	1 cut(s)	577
NdeI	CATATG	2 cut(s)	439, 1177
NdeII	GATC	4 cut(s)	58, 117, 847, 1267
NlaIII	CATG	5 cut(s)	118, 973, 1036, 1081, 1205
NlaIV	GGNNCC	2 cut(s)	81, 634
NmuCI	GTSAC	1 cut(s)	433
NsiI	ATGCAT	1 cut(s)	106
NspI	RCATGY	1 cut(s)	1081
PagI	TCATGA	1 cut(s)	114
PciI	ACATGT	1 cut(s)	1077
PcsI	WCGNNNNNNNCGW	2 cut(s)	130, 472
PkrI	GCNGC	1 cut(s)	390
PleI	GAGTC	2 cut(s)	43, 196
PpsI	GAGTC	2 cut(s)	43, 196
PscI	ACATGT	1 cut(s)	1077
PsiI	TTATAA	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	2 cut(s)	81, 634
PspPI	GGNCC	1 cut(s)	632
PsuI	RGATCY	1 cut(s)	1267
RsaI	GTAC	5 cut(s)	181, 445, 650, 738, 967
RsaNI	GTAC	5 cut(s)	180, 444, 649, 737, 966
SaqAI	TTAA	7 cut(s)	546, 711, 1005, 1284, 1331, 1344, 1362
SatI	GCNGC	1 cut(s)	389
Sau3AI	GATC	4 cut(s)	58, 117, 847, 1267
Sau96I	GGNCC	1 cut(s)	632
SchI	GAGTC	2 cut(s)	44, 197
ScrFI	CCNGG	2 cut(s)	84, 577
SfaNI	GCATC	4 cut(s)	91, 313, 459, 550
SfcI	CTRYAG	1 cut(s)	96
Sse9I	AATT	8 cut(s)	156, 170, 199, 522, 555, 652, 1001, 1221
SsiI	CCGC	4 cut(s)	69, 388, 610, 1055
SspI	AATATT	2 cut(s)	281, 1342
SspMI	CTAG	4 cut(s)	24, 426, 699, 936
StyD4I	CCNGG	2 cut(s)	82, 575
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	4 cut(s)	126, 345, 464, 1309
TaiI	ACGT	1 cut(s)	650
TaqI	TCGA	5 cut(s)	61, 160, 307, 361, 644
TasI	AATT	8 cut(s)	156, 170, 199, 522, 555, 652, 1001, 1221
TauI	GCSGC	1 cut(s)	391
Tru1I	TTAA	7 cut(s)	546, 711, 1005, 1284, 1331, 1344, 1362
Tru9I	TTAA	7 cut(s)	546, 711, 1005, 1284, 1331, 1344, 1362
TseFI	GTSAC	1 cut(s)	433
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	6 cut(s)	419, 821, 968, 1010, 1101, 1209
XagI	CCTNNNNNAGG	1 cut(s)	248
XapI	RAATTY	2 cut(s)	170, 1001
XceI	RCATGY	1 cut(s)	1081
XmiI	GTMKAC	1 cut(s)	839
XspI	CTAG	4 cut(s)	24, 426, 699, 936
Zsp2I	ATGCAT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.