AT5G11840

Protein of unknown function (DUF1230)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008080
Physical Location & Seq
Reverse (-)
3813302 .. 3814906
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11840.3

Sequence Viewer

Length: 798 bp
ATGGCTGCAACAGTGCTCGGCCATTTCAGTCCAATTACATCGTCCCTAAAACCACCGTCACGCCACCGGCGATTCCTACACCACAATTTGTCCCCCAAAACACCCCTTCAATCTTCTCTTATCAAATTCGGCGCCGAAAACTCCGAACCTCAACCTCCACGGCCGTTGCCGGAAACTGATTGTCCCGTTCCGCCGGAGCAGCAGCCAATCAACGAGTATCAATCTCTCTCCACCTCTTTCCCTTTCTCCTGGGCTTCAGGAGATCTAATCGAGTACTCTACCAGACTTTTCTTAACCGGCGCTTCTTTCGCATTTTTCGTCGGGTTACCCGTTTCCTGGTTCGGATCCATCGGACCCGAATATGAACCTGTTAAGAGGATTCTCGCCGCCAGCTCTAGCGGGATCTTCGTTGTCACGCTTGCTGTCGTAAGGATGTATCTTGGTTGGGCTTATGTCGGTAATCGTCTTCTTAGCGCCACCGTCGAGTATGAAGAAACTGGTTGGTACGATGGTCAGGTATGGGTGAAAACACCAGAAGTCTTGGCACGAGACCGTCTTCTTGGATCTTTCTCGGTAAAGCCAGTTCTTGCGAGACTGAAAAACACGCTAGTTATTCTCGGATTATCGCTCATTCTTGTTATAAACCTTGGTGATTCTCCAATTGCAACGTCTTATAGAACATACAGGGATCCTAGGGACAGATCCTCGCTGCCAATCCCAGGAGCGTACAATGATGAAACCGCAAGAACTTTCGAACCAGAAGCTTTCTGCGGTGAACCATCTTCCGATCTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1230

Protein Analysis

265

Amino Acids

29.31

Weight (kDa)

6.11

Isoelectric Point (pI)

52.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CGLD27-like PF06799 61 - 193 4.7e-50 Conserved in the green lineage and diatoms 27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 641
AccB1I GGYRCC 1 cut(s) 131
AciI CCGC 5 cut(s) 191, 387, 399, 741, 771
AclWI GGATC 7 cut(s) 339, 352, 410, 571, 683, 696, 696
AcoI YGGCCR 2 cut(s) 19, 161
AcsI RAATTY 1 cut(s) 125
AcuI CTGAAG 1 cut(s) 240
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 3 cut(s) 275, 506, 728
AfiI CCNNNNNNNGG 2 cut(s) 336, 719
AgsI TTSAA 1 cut(s) 110
AjnI CCWGG 3 cut(s) 248, 335, 718
AluBI AGCT 2 cut(s) 393, 764
AluI AGCT 2 cut(s) 393, 764
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 2 cut(s) 543, 586
AlwI GGATC 7 cut(s) 339, 352, 410, 571, 683, 696, 696
AoxI GGCC 2 cut(s) 19, 161
ApeKI GCWGC 4 cut(s) 5, 199, 202, 709
ApoI RAATTY 1 cut(s) 125
AspA2I CCTAGG 1 cut(s) 692
AspLEI GCGC 3 cut(s) 134, 302, 476
AspS9I GGNCC 1 cut(s) 353
AsuHPI GGTGA 3 cut(s) 535, 662, 785
AsuII TTCGAA 1 cut(s) 753
AvaII GGWCC 1 cut(s) 353
AvrII CCTAGG 1 cut(s) 692
BaeI ACNNNNGTAYC 2 cut(s) 496, 529
BamHI GGATCC 2 cut(s) 344, 688
BanI GGYRCC 1 cut(s) 131
BauI CACGAG 1 cut(s) 546
BbsI GAAGAC 2 cut(s) 458, 548
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 3 cut(s) 211, 214, 696
BccI CCATC 3 cut(s) 356, 503, 787
BceAI ACGGC 2 cut(s) 148, 176
BciT130I CCWGG 3 cut(s) 250, 337, 720
BcoDI GTCTC 2 cut(s) 543, 586
BfaI CTAG 3 cut(s) 396, 608, 693
BfoI RGCGCY 3 cut(s) 135, 303, 477
BglII AGATCT 1 cut(s) 262
BisI GCNGC 5 cut(s) 6, 200, 203, 387, 710
BlnI CCTAGG 1 cut(s) 692
BlsI GCNGC 5 cut(s) 7, 201, 204, 388, 711
BmcAI AGTACT 1 cut(s) 275
Bme1390I CCNGG 3 cut(s) 250, 337, 720
Bme18I GGWCC 1 cut(s) 353
BmgT120I GGNCC 1 cut(s) 353
BmiI GGNNCC 4 cut(s) 133, 346, 355, 690
BmrFI CCNGG 3 cut(s) 250, 337, 720
BpiI GAAGAC 2 cut(s) 458, 548
Bpu14I TTCGAA 1 cut(s) 753
BsaHI GRCGYC 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 543
BsaJI CCNNGG 5 cut(s) 158, 249, 646, 692, 718
Bsc4I CCNNNNNNNGG 2 cut(s) 336, 719
Bse118I RCCGGY 2 cut(s) 66, 296
Bse1I ACTGG 2 cut(s) 502, 581
BseBI CCWGG 3 cut(s) 250, 337, 720
BseDI CCNNGG 5 cut(s) 158, 249, 646, 692, 718
BseGI GGATG 1 cut(s) 438
BseLI CCNNNNNNNGG 2 cut(s) 336, 719
BseNI ACTGG 2 cut(s) 502, 581
BseX3I CGGCCG 1 cut(s) 161
BseXI GCAGC 3 cut(s) 211, 214, 696
Bsh1285I CGRYCG 1 cut(s) 164
BshFI GGCC 2 cut(s) 21, 163
BshNI GGYRCC 1 cut(s) 131
BsiEI CGRYCG 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 4 cut(s) 67, 170, 194, 297
BslFI GGGAC 4 cut(s) 28, 76, 168, 710
BslI CCNNNNNNNGG 2 cut(s) 336, 719
BsmAI GTCTC 2 cut(s) 543, 586
BsmFI GGGAC 4 cut(s) 28, 76, 168, 710
BsnI GGCC 2 cut(s) 21, 163
Bso31I GGTCTC 1 cut(s) 543
Bsp119I TTCGAA 1 cut(s) 753
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 7 cut(s) 262, 344, 402, 563, 688, 701, 787
BspACI CCGC 5 cut(s) 191, 387, 399, 741, 771
BspANI GGCC 2 cut(s) 21, 163
BspLI GGNNCC 4 cut(s) 133, 346, 355, 690
BspPI GGATC 7 cut(s) 339, 352, 410, 571, 683, 696, 696
BspT104I TTCGAA 1 cut(s) 753
BspT107I GGYRCC 1 cut(s) 131
BspTNI GGTCTC 1 cut(s) 543
BsrFI RCCGGY 2 cut(s) 66, 296
BsrI ACTGG 2 cut(s) 502, 581
BssAI RCCGGY 2 cut(s) 66, 296
BssECI CCNNGG 5 cut(s) 158, 249, 646, 692, 718
BssMI GATC 7 cut(s) 262, 344, 402, 563, 688, 701, 787
BssNI GRCGYC 1 cut(s) 132
BssSI CACGAG 1 cut(s) 546
BssT1I CCWWGG 2 cut(s) 646, 692
Bst2BI CACGAG 1 cut(s) 546
Bst2UI CCWGG 3 cut(s) 250, 337, 720
Bst4CI ACNGT 4 cut(s) 13, 57, 481, 554
BstACI GRCGYC 1 cut(s) 132
BstBI TTCGAA 1 cut(s) 753
BstC8I GCNNGC 2 cut(s) 391, 420
BstDEI CTNAG 1 cut(s) 470
BstDSI CCRYGG 1 cut(s) 158
BstEII GGTNACC 1 cut(s) 324
BstF5I GGATG 1 cut(s) 438
BstH2I RGCGCY 3 cut(s) 135, 303, 477
BstHHI GCGC 3 cut(s) 134, 302, 476
BstKTI GATC 7 cut(s) 265, 347, 405, 566, 691, 704, 790
BstMAI GTCTC 2 cut(s) 543, 586
BstMBI GATC 7 cut(s) 262, 344, 402, 563, 688, 701, 787
BstMCI CGRYCG 1 cut(s) 164
BstMWI GCNNNNNNNGC 2 cut(s) 199, 308
BstNI CCWGG 3 cut(s) 250, 337, 720
BstPI GGTNACC 1 cut(s) 324
BstSCI CCNGG 3 cut(s) 248, 335, 718
BstV1I GCAGC 3 cut(s) 211, 214, 696
BstV2I GAAGAC 2 cut(s) 458, 548
BstX2I RGATCY 6 cut(s) 262, 344, 402, 563, 688, 701
BstYI RGATCY 6 cut(s) 262, 344, 402, 563, 688, 701
BstZI CGGCCG 1 cut(s) 161
BsuRI GGCC 2 cut(s) 21, 163
BtgI CCRYGG 1 cut(s) 158
BtsCI GGATG 1 cut(s) 438
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 2 cut(s) 391, 420
CfoI GCGC 3 cut(s) 134, 302, 476
Cfr10I RCCGGY 2 cut(s) 66, 296
Cfr13I GGNCC 1 cut(s) 353
Csp6I GTAC 3 cut(s) 274, 505, 727
CspCI CAANNNNNGTGG 2 cut(s) 147, 182
CviJI RGCY 9 cut(s) 5, 21, 163, 205, 254, 393, 449, 580, 764
CviKI_1 RGCY 9 cut(s) 5, 21, 163, 205, 254, 393, 449, 580, 764
CviQI GTAC 3 cut(s) 274, 505, 727
DdeI CTNAG 1 cut(s) 470
DinI GGCGCC 1 cut(s) 133
DpnI GATC 7 cut(s) 264, 346, 404, 565, 690, 703, 789
DpnII GATC 7 cut(s) 262, 344, 402, 563, 688, 701, 787
EaeI YGGCCR 2 cut(s) 19, 161
EagI CGGCCG 1 cut(s) 161
EciI GGCGGA 1 cut(s) 180
EclXI CGGCCG 1 cut(s) 161
Eco130I CCWWGG 2 cut(s) 646, 692
Eco31I GGTCTC 1 cut(s) 543
Eco47I GGWCC 1 cut(s) 353
Eco52I CGGCCG 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 240
Eco91I GGTNACC 1 cut(s) 324
EcoO65I GGTNACC 1 cut(s) 324
EcoRII CCWGG 3 cut(s) 248, 335, 718
EcoT14I CCWWGG 2 cut(s) 646, 692
EgeI GGCGCC 1 cut(s) 133
EheI GGCGCC 1 cut(s) 133
ErhI CCWWGG 2 cut(s) 646, 692
FaiI YATR 7 cut(s) 363, 453, 489, 520, 641, 675, 682
FaqI GGGAC 4 cut(s) 28, 76, 168, 710
FauI CCCGC 1 cut(s) 392
Fnu4HI GCNGC 5 cut(s) 6, 200, 203, 387, 710
FokI GGATG 1 cut(s) 445
Fsp4HI GCNGC 5 cut(s) 6, 200, 203, 387, 710
FspBI CTAG 3 cut(s) 396, 608, 693
GlaI GCGC 3 cut(s) 133, 301, 475
GluI GCNGC 5 cut(s) 6, 200, 203, 387, 710
HaeII RGCGCY 3 cut(s) 135, 303, 477
HaeIII GGCC 2 cut(s) 21, 163
HapII CCGG 4 cut(s) 67, 170, 194, 297
HhaI GCGC 3 cut(s) 134, 302, 476
Hin1I GRCGYC 1 cut(s) 132
Hin6I GCGC 3 cut(s) 132, 300, 474
HinP1I GCGC 3 cut(s) 132, 300, 474
HindIII AAGCTT 1 cut(s) 762
HinfI GANTC 3 cut(s) 72, 379, 653
HpaII CCGG 4 cut(s) 67, 170, 194, 297
HphI GGTGA 3 cut(s) 535, 662, 785
Hpy166II GTNNAC 1 cut(s) 776
Hpy188I TCNGA 5 cut(s) 145, 344, 353, 620, 787
Hpy188III TCNNGA 1 cut(s) 258
Hpy8I GTNNAC 1 cut(s) 776
Hpy99I CGWCG 2 cut(s) 323, 485
HpyAV CCTTC 1 cut(s) 116
HpyCH4III ACNGT 4 cut(s) 13, 57, 481, 554
HpyCH4IV ACGT 1 cut(s) 668
HpyCH4V TGCA 2 cut(s) 8, 665
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 308
HpyF3I CTNAG 1 cut(s) 470
HpySE526I ACGT 1 cut(s) 668
Hsp92I GRCGYC 1 cut(s) 132
HspAI GCGC 3 cut(s) 132, 300, 474
KasI GGCGCC 1 cut(s) 131
Kzo9I GATC 7 cut(s) 262, 344, 402, 563, 688, 701, 787
LmnI GCTCC 2 cut(s) 196, 722
Lsp1109I GCAGC 3 cut(s) 211, 214, 696
MaeI CTAG 3 cut(s) 396, 608, 693
MaeII ACGT 1 cut(s) 668
MaeIII GTNAC 3 cut(s) 57, 324, 412
MalI GATC 7 cut(s) 264, 346, 404, 565, 690, 703, 789
MboI GATC 7 cut(s) 262, 344, 402, 563, 688, 701, 787
MboII GAAGA 7 cut(s) 105, 397, 458, 503, 548, 774, 782
MfeI CAATTG 1 cut(s) 660
MflI RGATCY 6 cut(s) 262, 344, 402, 563, 688, 701
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 4 cut(s) 33, 85, 125, 660
Mly113I GGCGCC 1 cut(s) 132
MnlI CCTC 5 cut(s) 159, 165, 244, 369, 715
MseI TTAA 2 cut(s) 293, 372
MspI CCGG 4 cut(s) 67, 170, 194, 297
MspR9I CCNGG 3 cut(s) 250, 337, 720
MunI CAATTG 1 cut(s) 660
MvaI CCWGG 3 cut(s) 250, 337, 720
MwoI GCNNNNNNNGC 2 cut(s) 199, 308
NarI GGCGCC 1 cut(s) 132
NdeII GATC 7 cut(s) 262, 344, 402, 563, 688, 701, 787
NlaIV GGNNCC 4 cut(s) 133, 346, 355, 690
NmuCI GTSAC 2 cut(s) 57, 412
NspV TTCGAA 1 cut(s) 753
PcsI WCGNNNNNNNCGW 3 cut(s) 67, 315, 327
PfeI GAWTC 3 cut(s) 72, 379, 653
PkrI GCNGC 5 cut(s) 7, 201, 204, 388, 711
PluTI GGCGCC 1 cut(s) 135
PsiI TTATAA 1 cut(s) 641
Psp6I CCWGG 3 cut(s) 248, 335, 718
PspEI GGTNACC 1 cut(s) 324
PspGI CCWGG 3 cut(s) 248, 335, 718
PspN4I GGNNCC 4 cut(s) 133, 346, 355, 690
PspPI GGNCC 1 cut(s) 353
PsrI GAACNNNNNNTAC 2 cut(s) 567, 599
PsuI RGATCY 6 cut(s) 262, 344, 402, 563, 688, 701
RsaI GTAC 3 cut(s) 275, 506, 728
RsaNI GTAC 3 cut(s) 274, 505, 727
SaqAI TTAA 2 cut(s) 293, 372
SatI GCNGC 5 cut(s) 6, 200, 203, 387, 710
Sau3AI GATC 7 cut(s) 262, 344, 402, 563, 688, 701, 787
Sau96I GGNCC 1 cut(s) 353
ScaI AGTACT 1 cut(s) 275
ScrFI CCNGG 3 cut(s) 250, 337, 720
SduI GDGCHC 1 cut(s) 18
SetI ASST 9 cut(s) 151, 157, 236, 370, 395, 519, 648, 671, 766
SfoI GGCGCC 1 cut(s) 133
SfuI TTCGAA 1 cut(s) 753
SgrAI CRCCGGYG 1 cut(s) 66
SinI GGWCC 1 cut(s) 353
Sse9I AATT 4 cut(s) 33, 85, 125, 660
SsiI CCGC 5 cut(s) 191, 387, 399, 741, 771
SspDI GGCGCC 1 cut(s) 131
SspMI CTAG 3 cut(s) 396, 608, 693
StyD4I CCNGG 3 cut(s) 248, 335, 718
StyI CCWWGG 2 cut(s) 646, 692
TaaI ACNGT 4 cut(s) 13, 57, 481, 554
TaiI ACGT 1 cut(s) 671
TaqI TCGA 3 cut(s) 270, 483, 753
TasI AATT 4 cut(s) 33, 85, 125, 660
TatI WGTACW 1 cut(s) 273
TauI GCSGC 1 cut(s) 389
TfiI GAWTC 3 cut(s) 72, 379, 653
Tru1I TTAA 2 cut(s) 293, 372
Tru9I TTAA 2 cut(s) 293, 372
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 2 cut(s) 57, 412
TseI GCWGC 4 cut(s) 5, 199, 202, 709
Tsp45I GTSAC 2 cut(s) 57, 412
TspDTI ATGAA 3 cut(s) 378, 504, 750
TspRI CASTG 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 353
XapI RAATTY 1 cut(s) 125
XmaJI CCTAGG 1 cut(s) 692
XspI CTAG 3 cut(s) 396, 608, 693
ZrmI AGTACT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.