Rorug06G0383700

Protein of unknown function (DUF1230)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008080
Physical Location & Seq
Reverse (-)
52938773 .. 52939990
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0383700.1

Sequence Viewer

Length: 834 bp
ATGTGTAGCTTGGAGCGCCACTCTGCCTTGTGCTTCAACTTGAAGTATTTCGAGGATTGCTTCATTGGTGGAAACCTTGACGAAGCTGATGATTACCTCAGCGGTTTCACCTCCGTCGATGACAATTCTTTCTCGACTCTTCTCTTTTTTGAGATTAGATGGCACAAGTTCATACTAGCACTGGATTTAAAGCAACGTCAGAGAGCGAGAAGAATACTCAGAGAAGAACTCCAAACATTTCAGCGCTTCGACTGTCGTCTCAAAGCTAATATGTCCGAGCTCTTACGCTTGGATAATTTCAGAGATGGGCTAGGTGAAGAATACGAGGACCTTGGAGTTGCAAGGTTGAATGCAATGGAGGAAGTTAGGAACAACCTGGAGGCCAATCCATTGTTGAAAAACAAGATTGTGTACCCTCCTGCGGGGAATTTCGGGGTTTCGGATCATGTGCATCCGGCTACACCATTCCCGGGTCTGGCATTAATTCCGTCAACTCTGACAGCAGGTCCAAGTGAAGCTAATCAGACTCCAGCACCGGGCAAACATTCCACCACCTTATCCTCTTGTCTATTTTCGAACCTGCAGTTACCTGTCACTATTCAGCCTCGCCCCACTCCGCCGGCGGCGTCGCTGCAGCTATCAGGAATGAGACGTGAACGTCAGGAGAAGGAGGAGGAGGAGCGTAGAAAGCGCACTCGACACTGTTTGGACCTCGTTCCTGTCAATCTGCATCCTGGGCTTGAGGCGAACGCTGAGGGGCTTGAGGCTCCTAAGCAGAACAACCCCAAAATGGATTCTCGTACTGCTCCATCTGCTACCCAGACCCCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1230

Protein Analysis

277

Amino Acids

31.24

Weight (kDa)

6.09

Isoelectric Point (pI)

60.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR1-like_2nd PF21889 13 - 136 2.2e-31 TPR1-like, CTLH-containing domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 657
Acc36I ACCTGC 2 cut(s) 494, 588
AciI CCGC 4 cut(s) 102, 422, 617, 623
AclWI GGATC 1 cut(s) 450
AcsI RAATTY 1 cut(s) 427
AcyI GRCGYC 1 cut(s) 626
AfaI GTAC 2 cut(s) 413, 802
AfeI AGCGCT 1 cut(s) 245
AfiI CCNNNNNNNGG 6 cut(s) 421, 422, 470, 475, 536, 790
AgsI TTSAA 4 cut(s) 37, 43, 349, 397
AhdI GACNNNNNGTC 1 cut(s) 504
AjiI CACGTC 1 cut(s) 653
AjnI CCWGG 2 cut(s) 375, 733
AluBI AGCT 6 cut(s) 9, 86, 266, 280, 518, 637
AluI AGCT 6 cut(s) 9, 86, 266, 280, 518, 637
Alw21I GWGCWC 1 cut(s) 282
Alw26I GTCTC 2 cut(s) 263, 643
AlwI GGATC 1 cut(s) 450
Ama87I CYCGRG 1 cut(s) 469
Aor51HI AGCGCT 1 cut(s) 245
AoxI GGCC 1 cut(s) 381
ApeKI GCWGC 2 cut(s) 631, 634
ApoI RAATTY 1 cut(s) 427
AseI ATTAAT 1 cut(s) 482
Asp700I GAANNNNTTC 1 cut(s) 47
AspLEI GCGC 3 cut(s) 18, 246, 693
AspS9I GGNCC 3 cut(s) 328, 506, 709
AsuC2I CCSGG 3 cut(s) 470, 471, 537
AsuHPI GGTGA 2 cut(s) 100, 326
AsuII TTCGAA 1 cut(s) 575
AvaI CYCGRG 1 cut(s) 469
AvaII GGWCC 3 cut(s) 328, 506, 709
BanII GRGCYC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 282
BbvCI CCTCAGC 2 cut(s) 98, 753
BbvI GCAGC 2 cut(s) 618, 646
BccI CCATC 3 cut(s) 153, 299, 817
BciT130I CCWGG 2 cut(s) 377, 735
BcnI CCSGG 3 cut(s) 470, 471, 537
BcoDI GTCTC 2 cut(s) 263, 643
BfaI CTAG 2 cut(s) 176, 311
BfmI CTRYAG 2 cut(s) 581, 632
BfoI RGCGCY 2 cut(s) 19, 247
BfuAI ACCTGC 2 cut(s) 494, 588
BisI GCNGC 3 cut(s) 624, 632, 635
BlsI GCNGC 3 cut(s) 625, 633, 636
Bme1390I CCNGG 5 cut(s) 377, 470, 471, 537, 735
Bme18I GGWCC 3 cut(s) 328, 506, 709
BmeRI GACNNNNNGTC 1 cut(s) 504
BmeT110I CYCGRG 1 cut(s) 469
BmgBI CACGTC 1 cut(s) 653
BmgT120I GGNCC 3 cut(s) 328, 506, 709
BmiI GGNNCC 1 cut(s) 768
BmrFI CCNGG 5 cut(s) 377, 470, 471, 537, 735
BmsI GCATC 2 cut(s) 460, 739
BoxI GACNNNNGTC 1 cut(s) 255
BplI GAGNNNNNCTC 3 cut(s) 37, 213, 245
BpmI CTGGAG 2 cut(s) 398, 513
Bpu10I CCTNAGC 3 cut(s) 98, 753, 771
Bpu14I TTCGAA 1 cut(s) 575
BpuEI CTTGAG 2 cut(s) 761, 782
BpuMI CCSGG 3 cut(s) 470, 471, 537
BsaHI GRCGYC 1 cut(s) 626
BsaJI CCNNGG 3 cut(s) 331, 469, 734
Bsc4I CCNNNNNNNGG 6 cut(s) 421, 422, 470, 475, 536, 790
Bse118I RCCGGY 1 cut(s) 619
Bse1I ACTGG 1 cut(s) 186
Bse3DI GCAATG 1 cut(s) 360
BseBI CCWGG 2 cut(s) 377, 735
BseDI CCNNGG 3 cut(s) 331, 469, 734
BseGI GGATG 2 cut(s) 451, 730
BseLI CCNNNNNNNGG 6 cut(s) 421, 422, 470, 475, 536, 790
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 3 cut(s) 112, 232, 744
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 3 cut(s) 686, 689, 692
BseXI GCAGC 2 cut(s) 618, 646
BshFI GGCC 1 cut(s) 383
BsiHKAI GWGCWC 1 cut(s) 282
BsiHKCI CYCGRG 1 cut(s) 469
BsiSI CCGG 4 cut(s) 455, 470, 536, 620
BslI CCNNNNNNNGG 6 cut(s) 421, 422, 470, 475, 536, 790
BsmAI GTCTC 2 cut(s) 263, 643
BsmBI CGTCTC 2 cut(s) 263, 643
BsmI GAATGC 1 cut(s) 355
BsnI GGCC 1 cut(s) 383
BsoBI CYCGRG 1 cut(s) 469
Bsp119I TTCGAA 1 cut(s) 575
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 1 cut(s) 442
BspACI CCGC 4 cut(s) 102, 422, 617, 623
BspANI GGCC 1 cut(s) 383
BspCNI CTCAG 3 cut(s) 111, 231, 745
BspLI GGNNCC 1 cut(s) 768
BspMAI CTGCAG 2 cut(s) 585, 636
BspMI ACCTGC 2 cut(s) 494, 588
BspPI GGATC 1 cut(s) 450
BspT104I TTCGAA 1 cut(s) 575
BsrDI GCAATG 1 cut(s) 360
BsrFI RCCGGY 1 cut(s) 619
BsrI ACTGG 1 cut(s) 186
BssAI RCCGGY 1 cut(s) 619
BssECI CCNNGG 3 cut(s) 331, 469, 734
BssMI GATC 1 cut(s) 442
BssNI GRCGYC 1 cut(s) 626
BssT1I CCWWGG 1 cut(s) 331
Bst2UI CCWGG 2 cut(s) 377, 735
Bst4CI ACNGT 2 cut(s) 254, 704
Bst6I CTCTTC 1 cut(s) 144
BstACI GRCGYC 1 cut(s) 626
BstBI TTCGAA 1 cut(s) 575
BstC8I GCNNGC 1 cut(s) 621
BstDEI CTNAG 4 cut(s) 98, 218, 753, 771
BstF5I GGATG 2 cut(s) 451, 730
BstH2I RGCGCY 2 cut(s) 19, 247
BstHHI GCGC 3 cut(s) 18, 246, 693
BstKTI GATC 1 cut(s) 445
BstMAI GTCTC 2 cut(s) 263, 643
BstMBI GATC 1 cut(s) 442
BstMWI GCNNNNNNNGC 4 cut(s) 15, 688, 736, 812
BstNI CCWGG 2 cut(s) 377, 735
BstPAI GACNNNNGTC 1 cut(s) 255
BstSCI CCNGG 5 cut(s) 375, 468, 469, 535, 733
BstSFI CTRYAG 2 cut(s) 581, 632
BstV1I GCAGC 2 cut(s) 618, 646
BsuRI GGCC 1 cut(s) 383
BtrI CACGTC 1 cut(s) 653
BtsCI GGATG 2 cut(s) 451, 730
BtsIMutI CAGTG 2 cut(s) 179, 700
BveI ACCTGC 2 cut(s) 494, 588
Cac8I GCNNGC 1 cut(s) 621
CfoI GCGC 3 cut(s) 18, 246, 693
Cfr10I RCCGGY 1 cut(s) 619
Cfr13I GGNCC 3 cut(s) 328, 506, 709
Cfr9I CCCGGG 1 cut(s) 469
CseI GACGC 1 cut(s) 615
Csp6I GTAC 2 cut(s) 412, 801
CviAII CATG 1 cut(s) 446
CviQI GTAC 2 cut(s) 412, 801
DdeI CTNAG 4 cut(s) 98, 218, 753, 771
DpnI GATC 1 cut(s) 444
DpnII GATC 1 cut(s) 442
DraI TTTAAA 1 cut(s) 189
DrdI GACNNNNNNGTC 1 cut(s) 657
DriI GACNNNNNGTC 1 cut(s) 504
DseDI GACNNNNNNGTC 1 cut(s) 657
Eam1104I CTCTTC 1 cut(s) 144
Eam1105I GACNNNNNGTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 144
EciI GGCGGA 1 cut(s) 606
Ecl136II GAGCTC 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 282
Eco47I GGWCC 3 cut(s) 328, 506, 709
Eco47III AGCGCT 1 cut(s) 245
Eco53kI GAGCTC 1 cut(s) 280
Eco88I CYCGRG 1 cut(s) 469
EcoICRI GAGCTC 1 cut(s) 280
EcoO109I RGGNCCY 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 375, 733
EcoT14I CCWWGG 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 331
Esp3I CGTCTC 2 cut(s) 263, 643
FaeI CATG 1 cut(s) 449
FaiI YATR 3 cut(s) 173, 272, 447
FatI CATG 1 cut(s) 445
FauI CCCGC 1 cut(s) 415
Fnu4HI GCNGC 3 cut(s) 624, 632, 635
FokI GGATG 2 cut(s) 438, 717
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 3 cut(s) 624, 632, 635
FspBI CTAG 2 cut(s) 176, 311
GlaI GCGC 3 cut(s) 17, 245, 692
GluI GCNGC 3 cut(s) 624, 632, 635
GsuI CTGGAG 2 cut(s) 398, 513
HaeII RGCGCY 2 cut(s) 19, 247
HaeIII GGCC 1 cut(s) 383
HapII CCGG 4 cut(s) 455, 470, 536, 620
HgaI GACGC 1 cut(s) 615
HhaI GCGC 3 cut(s) 18, 246, 693
Hin1I GRCGYC 1 cut(s) 626
Hin1II CATG 1 cut(s) 449
Hin6I GCGC 3 cut(s) 16, 244, 691
HinP1I GCGC 3 cut(s) 16, 244, 691
HincII GTYRAC 1 cut(s) 492
HindII GTYRAC 1 cut(s) 492
HinfI GANTC 3 cut(s) 136, 526, 794
HpaII CCGG 4 cut(s) 455, 470, 536, 620
HphI GGTGA 2 cut(s) 100, 326
Hpy166II GTNNAC 3 cut(s) 412, 492, 656
Hpy188I TCNGA 7 cut(s) 201, 221, 277, 302, 442, 498, 525
Hpy188III TCNNGA 3 cut(s) 133, 642, 662
Hpy8I GTNNAC 3 cut(s) 412, 492, 656
Hpy99I CGWCG 2 cut(s) 119, 631
HpyAV CCTTC 1 cut(s) 661
HpyCH4III ACNGT 2 cut(s) 254, 704
HpyCH4IV ACGT 3 cut(s) 196, 652, 658
HpyCH4V TGCA 6 cut(s) 341, 353, 451, 583, 634, 730
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 688, 736, 812
HpyF3I CTNAG 4 cut(s) 98, 218, 753, 771
HpySE526I ACGT 3 cut(s) 196, 652, 658
Hsp92I GRCGYC 1 cut(s) 626
Hsp92II CATG 1 cut(s) 449
HspAI GCGC 3 cut(s) 16, 244, 691
KroI GCCGGC 1 cut(s) 619
KroNI GCCGGC 1 cut(s) 621
Kzo9I GATC 1 cut(s) 442
LmnI GCTCC 4 cut(s) 13, 679, 772, 811
Lsp1109I GCAGC 2 cut(s) 618, 646
LweI GCATC 2 cut(s) 460, 739
MaeI CTAG 2 cut(s) 176, 311
MaeII ACGT 3 cut(s) 196, 652, 658
MaeIII GTNAC 2 cut(s) 585, 592
MalI GATC 1 cut(s) 444
MboI GATC 1 cut(s) 442
MboII GAAGA 4 cut(s) 131, 222, 236, 329
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 4 cut(s) 124, 295, 427, 483
MlyI GAGTC 2 cut(s) 130, 520
MreI CGCCGGCG 1 cut(s) 619
MroNI GCCGGC 1 cut(s) 619
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 2 cut(s) 188, 482
MspA1I CMGCKG 1 cut(s) 102
MspI CCGG 4 cut(s) 455, 470, 536, 620
MspR9I CCNGG 5 cut(s) 377, 470, 471, 537, 735
Mva1269I GAATGC 1 cut(s) 355
MvaI CCWGG 2 cut(s) 377, 735
MwoI GCNNNNNNNGC 4 cut(s) 15, 688, 736, 812
NaeI GCCGGC 1 cut(s) 621
NciI CCSGG 3 cut(s) 470, 471, 537
NdeII GATC 1 cut(s) 442
NgoMIV GCCGGC 1 cut(s) 619
NlaIII CATG 1 cut(s) 449
NlaIV GGNNCC 1 cut(s) 768
NmuCI GTSAC 1 cut(s) 592
NspV TTCGAA 1 cut(s) 575
PctI GAATGC 1 cut(s) 355
PdiI GCCGGC 1 cut(s) 621
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 1 cut(s) 794
PkrI GCNGC 3 cut(s) 625, 633, 636
PleI GAGTC 2 cut(s) 130, 520
PpsI GAGTC 2 cut(s) 130, 520
PpuMI RGGWCCY 1 cut(s) 328
PshAI GACNNNNGTC 1 cut(s) 255
PshBI ATTAAT 1 cut(s) 482
Psp124BI GAGCTC 1 cut(s) 282
Psp5II RGGWCCY 1 cut(s) 328
Psp6I CCWGG 2 cut(s) 375, 733
PspGI CCWGG 2 cut(s) 375, 733
PspN4I GGNNCC 1 cut(s) 768
PspPI GGNCC 3 cut(s) 328, 506, 709
PspPPI RGGWCCY 1 cut(s) 328
PstI CTGCAG 2 cut(s) 585, 636
RsaI GTAC 2 cut(s) 413, 802
RsaNI GTAC 2 cut(s) 412, 801
SacI GAGCTC 1 cut(s) 282
SaqAI TTAA 2 cut(s) 188, 482
SatI GCNGC 3 cut(s) 624, 632, 635
Sau3AI GATC 1 cut(s) 442
Sau96I GGNCC 3 cut(s) 328, 506, 709
SchI GAGTC 2 cut(s) 130, 520
ScrFI CCNGG 5 cut(s) 377, 470, 471, 537, 735
SduI GDGCHC 1 cut(s) 282
SfaNI GCATC 2 cut(s) 460, 739
SfcI CTRYAG 2 cut(s) 581, 632
SfuI TTCGAA 1 cut(s) 575
SgrAI CRCCGGYG 1 cut(s) 619
SinI GGWCC 3 cut(s) 328, 506, 709
SmaI CCCGGG 1 cut(s) 471
SmlI CTYRAG 2 cut(s) 740, 761
SmoI CTYRAG 2 cut(s) 740, 761
Sse9I AATT 4 cut(s) 124, 295, 427, 483
SsiI CCGC 4 cut(s) 102, 422, 617, 623
SspMI CTAG 2 cut(s) 176, 311
SstI GAGCTC 1 cut(s) 282
StyD4I CCNGG 5 cut(s) 375, 468, 469, 535, 733
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 2 cut(s) 254, 704
TaiI ACGT 3 cut(s) 199, 655, 661
TaqI TCGA 6 cut(s) 51, 117, 134, 249, 575, 697
TasI AATT 4 cut(s) 124, 295, 427, 483
TauI GCSGC 1 cut(s) 626
TfiI GAWTC 1 cut(s) 794
Tru1I TTAA 2 cut(s) 188, 482
Tru9I TTAA 2 cut(s) 188, 482
TscAI CASTG 2 cut(s) 186, 707
TseFI GTSAC 1 cut(s) 592
TseI GCWGC 2 cut(s) 631, 634
Tsp45I GTSAC 1 cut(s) 592
TspDTI ATGAA 2 cut(s) 52, 160
TspGWI ACGGA 2 cut(s) 103, 477
TspMI CCCGGG 1 cut(s) 469
TspRI CASTG 2 cut(s) 186, 707
VpaK11BI GGWCC 3 cut(s) 328, 506, 709
VspI ATTAAT 1 cut(s) 482
XapI RAATTY 1 cut(s) 427
XmaI CCCGGG 1 cut(s) 469
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 2 cut(s) 176, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.