Rh6BG507500

Protein of unknown function (DUF1230)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0008080
Physical Location & Seq
Reverse (-)
70485885 .. 70486989
1105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG507500.1

Sequence Viewer

Length: 747 bp
ATGGCCACCGCACTTCTTCTACACCCAGCCCCAAATTTCCTCTCACCAATCCCTCCAACCCCAAATCCCAGACTTCACCACTACCGCACCAAAATACCCTTCTCGTCGTCGTCGTCGTTCCGAAACGGCGGCCCAGCAGAAACAGAGTGCCCTGTTCCGCTGGAGCAGCAGCCCATAAACGAGTACCAGAACCTCTCCACCTCCTTCCCCTTCTCGTGGGCCTCCGGCGACCTCGTCGAGTACTGCTCTCGCCTGATCGCCACCGGCGCCTCCTTCGCGCTCTTCGTGGGCCTCCCCGTCGCCTCCTTCGGCGTCTTCGGGGCCCAATCGGAGCCGCTCAAGCAGTCCCTCTACGCAGTTTCCAGTGGGTTTTTGGTGGTCACTCTCGCCGTGGTGAGGATGTACCTCGGTTGGGCTTACGTCGGCAACCGCTTGCTTAGTGCCACTGTTGAATACGAAGAGACTGGGTGGTATGATGGTCAGATATGGGTTAAGACTGCTGAAGTTTTGGCGCGTGATCGGCTTCTCGGTTCATTTTCTGTGAAGCCTGTGCTGAGCAGATTGAAGTTAACGCTGGTGACTCTTGCAGCATCGATACTTGCATGTGTGCTCGTCCTTCTTTACATTGATGGAGGCCAAATCCAAGAAGCCGAGAATCGCGTTATACGTGGAGTTTACAACGATGATTCTGCAAGATCGTTTGAGCCCGATGCGTTTTGTGGTGGTGATCCTGGTCCTCCCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1230

Protein Analysis

248

Amino Acids

26.96

Weight (kDa)

5.4

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CGLD27-like PF06799 50 - 193 7.1e-54 Conserved in the green lineage and diatoms 27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 266
AccBSI CCGCTC 1 cut(s) 337
AccII CGCG 3 cut(s) 278, 514, 660
AciI CCGC 6 cut(s) 9, 85, 129, 158, 335, 430
AclWI GGATC 1 cut(s) 722
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 34
AcuI CTGAAG 1 cut(s) 522
AcyI GRCGYC 2 cut(s) 267, 312
AfaI GTAC 3 cut(s) 185, 242, 404
AfiI CCNNNNNNNGG 3 cut(s) 216, 396, 412
AgsI TTSAA 2 cut(s) 452, 565
AjnI CCWGG 1 cut(s) 730
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
Alw21I GWGCWC 1 cut(s) 612
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 1 cut(s) 722
AoxI GGCC 6 cut(s) 3, 130, 219, 289, 321, 634
ApaI GGGCCC 1 cut(s) 325
ApeKI GCWGC 3 cut(s) 166, 169, 587
ApoI RAATTY 1 cut(s) 34
AspLEI GCGC 3 cut(s) 269, 280, 514
AspS9I GGNCC 6 cut(s) 131, 219, 289, 321, 322, 734
AsuHPI GGTGA 5 cut(s) 36, 68, 406, 589, 737
AvaII GGWCC 1 cut(s) 734
BaeGI GKGCMC 2 cut(s) 152, 325
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 266
BanII GRGCYC 2 cut(s) 325, 708
BauI CACGAG 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 612
BbvI GCAGC 3 cut(s) 178, 181, 599
BccI CCATC 2 cut(s) 470, 623
BceAI ACGGC 2 cut(s) 142, 374
BcgI CGANNNNNNTGC 2 cut(s) 671, 705
BciT130I CCWGG 1 cut(s) 732
BcoDI GTCTC 1 cut(s) 455
BfoI RGCGCY 1 cut(s) 270
BisI GCNGC 5 cut(s) 130, 167, 170, 335, 588
BlpI GCTNAGC 1 cut(s) 554
BlsI GCNGC 5 cut(s) 131, 168, 171, 336, 589
BmcAI AGTACT 1 cut(s) 242
Bme1390I CCNGG 1 cut(s) 732
Bme18I GGWCC 1 cut(s) 734
BmgT120I GGNCC 6 cut(s) 131, 219, 289, 321, 322, 734
BmiI GGNNCC 4 cut(s) 268, 322, 323, 333
BmrFI CCNGG 1 cut(s) 732
BmrI ACTGGG 1 cut(s) 474
BmsI GCATC 2 cut(s) 599, 700
BmuI ACTGGG 1 cut(s) 474
BpiI GAAGAC 1 cut(s) 307
BplI GAGNNNNNCTC 2 cut(s) 230, 262
BpmI CTGGAG 1 cut(s) 182
Bpu1102I GCTNAGC 1 cut(s) 554
BpuEI CTTGAG 1 cut(s) 323
Bsa29I ATCGAT 1 cut(s) 593
BsaAI YACGTR 1 cut(s) 668
BsaHI GRCGYC 2 cut(s) 267, 312
BsaJI CCNNGG 2 cut(s) 390, 406
Bsc4I CCNNNNNNNGG 3 cut(s) 216, 396, 412
Bse118I RCCGGY 1 cut(s) 263
Bse1I ACTGG 2 cut(s) 363, 469
BseBI CCWGG 1 cut(s) 732
BseCI ATCGAT 1 cut(s) 593
BseDI CCNNGG 2 cut(s) 390, 406
BseGI GGATG 1 cut(s) 405
BseLI CCNNNNNNNGG 3 cut(s) 216, 396, 412
BseMII CTCAG 1 cut(s) 545
BseNI ACTGG 2 cut(s) 363, 469
BseSI GKGCMC 2 cut(s) 152, 325
BseXI GCAGC 3 cut(s) 178, 181, 599
BseYI CCCAGC 2 cut(s) 25, 133
Bsh1236I CGCG 3 cut(s) 278, 514, 660
BshFI GGCC 6 cut(s) 5, 132, 221, 291, 323, 636
BshNI GGYRCC 1 cut(s) 266
BshVI ATCGAT 1 cut(s) 593
BsiHKAI GWGCWC 1 cut(s) 612
BsiSI CCGG 2 cut(s) 225, 264
BslFI GGGAC 1 cut(s) 331
BslI CCNNNNNNNGG 3 cut(s) 216, 396, 412
BsmAI GTCTC 1 cut(s) 455
BsmFI GGGAC 1 cut(s) 331
BsnI GGCC 6 cut(s) 5, 132, 221, 291, 323, 636
Bsp120I GGGCCC 1 cut(s) 321
Bsp1286I GDGCHC 4 cut(s) 152, 325, 612, 708
Bsp143I GATC 4 cut(s) 255, 517, 695, 727
Bsp1720I GCTNAGC 1 cut(s) 554
BspACI CCGC 6 cut(s) 9, 85, 129, 158, 335, 430
BspANI GGCC 6 cut(s) 5, 132, 221, 291, 323, 636
BspCNI CTCAG 1 cut(s) 546
BspDI ATCGAT 1 cut(s) 593
BspFNI CGCG 3 cut(s) 278, 514, 660
BspLI GGNNCC 4 cut(s) 268, 322, 323, 333
BspPI GGATC 1 cut(s) 722
BspQI GCTCTTC 1 cut(s) 287
BspT107I GGYRCC 1 cut(s) 266
BsrBI CCGCTC 1 cut(s) 337
BsrFI RCCGGY 1 cut(s) 263
BsrI ACTGG 2 cut(s) 363, 469
BssAI RCCGGY 1 cut(s) 263
BssECI CCNNGG 2 cut(s) 390, 406
BssMI GATC 4 cut(s) 255, 517, 695, 727
BssNI GRCGYC 2 cut(s) 267, 312
BssSI CACGAG 1 cut(s) 214
Bst2BI CACGAG 1 cut(s) 214
Bst2UI CCWGG 1 cut(s) 732
Bst4CI ACNGT 1 cut(s) 448
Bst6I CTCTTC 2 cut(s) 287, 453
BstACI GRCGYC 2 cut(s) 267, 312
BstBAI YACGTR 1 cut(s) 668
BstC8I GCNNGC 1 cut(s) 434
BstDEI CTNAG 2 cut(s) 437, 554
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 1 cut(s) 405
BstFNI CGCG 3 cut(s) 278, 514, 660
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 3 cut(s) 269, 280, 514
BstKTI GATC 4 cut(s) 258, 520, 698, 730
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 4 cut(s) 255, 517, 695, 727
BstMWI GCNNNNNNNGC 5 cut(s) 166, 266, 275, 340, 520
BstNI CCWGG 1 cut(s) 732
BstNSI RCATGY 1 cut(s) 606
BstSCI CCNGG 1 cut(s) 730
BstSLI GKGCMC 2 cut(s) 152, 325
BstUI CGCG 3 cut(s) 278, 514, 660
BstV1I GCAGC 3 cut(s) 178, 181, 599
BstV2I GAAGAC 1 cut(s) 307
Bsu15I ATCGAT 1 cut(s) 593
BsuRI GGCC 6 cut(s) 5, 132, 221, 291, 323, 636
BsuTUI ATCGAT 1 cut(s) 593
BtgI CCRYGG 1 cut(s) 390
BtsCI GGATG 1 cut(s) 405
BtsIMutI CAGTG 2 cut(s) 370, 444
Cac8I GCNNGC 1 cut(s) 434
CfoI GCGC 3 cut(s) 269, 280, 514
Cfr10I RCCGGY 1 cut(s) 263
Cfr13I GGNCC 6 cut(s) 131, 219, 289, 321, 322, 734
ClaI ATCGAT 1 cut(s) 593
CseI GACGC 1 cut(s) 301
Csp6I GTAC 3 cut(s) 184, 241, 403
CviAII CATG 1 cut(s) 603
CviQI GTAC 3 cut(s) 184, 241, 403
DdeI CTNAG 2 cut(s) 437, 554
DinI GGCGCC 1 cut(s) 268
DpnI GATC 4 cut(s) 257, 519, 697, 729
DpnII GATC 4 cut(s) 255, 517, 695, 727
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 287, 453
EarI CTCTTC 2 cut(s) 287, 453
Eco24I GRGCYC 2 cut(s) 325, 708
Eco47I GGWCC 1 cut(s) 734
Eco57I CTGAAG 1 cut(s) 522
EcoO109I RGGNCCY 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 730
EcoT38I GRGCYC 2 cut(s) 325, 708
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
FaeI CATG 1 cut(s) 606
FaiI YATR 5 cut(s) 176, 474, 487, 604, 665
FaqI GGGAC 1 cut(s) 331
FatI CATG 1 cut(s) 602
Fnu4HI GCNGC 5 cut(s) 130, 167, 170, 335, 588
FokI GGATG 1 cut(s) 412
FriOI GRGCYC 2 cut(s) 325, 708
Fsp4HI GCNGC 5 cut(s) 130, 167, 170, 335, 588
GlaI GCGC 3 cut(s) 268, 279, 513
GluI GCNGC 5 cut(s) 130, 167, 170, 335, 588
GsaI CCCAGC 2 cut(s) 29, 137
GsuI CTGGAG 1 cut(s) 182
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 6 cut(s) 5, 132, 221, 291, 323, 636
HapII CCGG 2 cut(s) 225, 264
HgaI GACGC 1 cut(s) 301
HhaI GCGC 3 cut(s) 269, 280, 514
Hin1I GRCGYC 2 cut(s) 267, 312
Hin1II CATG 1 cut(s) 606
Hin6I GCGC 3 cut(s) 267, 278, 512
HinP1I GCGC 3 cut(s) 267, 278, 512
HincII GTYRAC 1 cut(s) 570
HindII GTYRAC 1 cut(s) 570
HinfI GANTC 3 cut(s) 580, 655, 686
HpaI GTTAAC 1 cut(s) 570
HpaII CCGG 2 cut(s) 225, 264
HphI GGTGA 5 cut(s) 36, 68, 406, 589, 737
Hpy166II GTNNAC 2 cut(s) 570, 676
Hpy188I TCNGA 3 cut(s) 122, 331, 483
Hpy8I GTNNAC 2 cut(s) 570, 676
Hpy99I CGWCG 7 cut(s) 109, 112, 115, 118, 239, 302, 425
HpyAV CCTTC 6 cut(s) 109, 214, 220, 283, 316, 626
HpyCH4III ACNGT 1 cut(s) 448
HpyCH4IV ACGT 2 cut(s) 420, 667
HpyCH4V TGCA 3 cut(s) 587, 602, 692
HpyF10VI GCNNNNNNNGC 5 cut(s) 166, 266, 275, 340, 520
HpyF3I CTNAG 2 cut(s) 437, 554
HpySE526I ACGT 2 cut(s) 420, 667
Hsp92I GRCGYC 2 cut(s) 267, 312
Hsp92II CATG 1 cut(s) 606
HspAI GCGC 3 cut(s) 267, 278, 512
KasI GGCGCC 1 cut(s) 266
KspAI GTTAAC 1 cut(s) 570
Kzo9I GATC 4 cut(s) 255, 517, 695, 727
LguI GCTCTTC 1 cut(s) 287
LmnI GCTCC 2 cut(s) 163, 331
Lsp1109I GCAGC 3 cut(s) 178, 181, 599
LweI GCATC 2 cut(s) 599, 700
MaeII ACGT 2 cut(s) 420, 667
MaeIII GTNAC 2 cut(s) 379, 577
MalI GATC 4 cut(s) 257, 519, 697, 729
MbiI CCGCTC 1 cut(s) 337
MboI GATC 4 cut(s) 255, 517, 695, 727
MboII GAAGA 4 cut(s) 8, 274, 307, 470
MhlI GDGCHC 4 cut(s) 152, 325, 612, 708
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 34
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 267
MlyI GAGTC 1 cut(s) 574
MmeI TCCRAC 1 cut(s) 80
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 492, 569
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 160
MspI CCGG 2 cut(s) 225, 264
MspR9I CCNGG 1 cut(s) 732
MvaI CCWGG 1 cut(s) 732
MvnI CGCG 3 cut(s) 278, 514, 660
MwoI GCNNNNNNNGC 5 cut(s) 166, 266, 275, 340, 520
NarI GGCGCC 1 cut(s) 267
NdeII GATC 4 cut(s) 255, 517, 695, 727
NlaIII CATG 1 cut(s) 606
NlaIV GGNNCC 4 cut(s) 268, 322, 323, 333
NmeAIII GCCGAG 1 cut(s) 676
NmuCI GTSAC 2 cut(s) 379, 577
NspI RCATGY 1 cut(s) 606
PciSI GCTCTTC 1 cut(s) 287
PcsI WCGNNNNNNNCGW 4 cut(s) 110, 113, 282, 664
PfeI GAWTC 2 cut(s) 655, 686
PflFI GACNNNGTC 1 cut(s) 233
PkrI GCNGC 5 cut(s) 131, 168, 171, 336, 589
PleI GAGTC 1 cut(s) 574
PluTI GGCGCC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 574
Ppu21I YACGTR 1 cut(s) 668
Psp6I CCWGG 1 cut(s) 730
PspFI CCCAGC 2 cut(s) 25, 133
PspGI CCWGG 1 cut(s) 730
PspN4I GGNNCC 4 cut(s) 268, 322, 323, 333
PspOMI GGGCCC 1 cut(s) 321
PspPI GGNCC 6 cut(s) 131, 219, 289, 321, 322, 734
PsyI GACNNNGTC 1 cut(s) 233
RsaI GTAC 3 cut(s) 185, 242, 404
RsaNI GTAC 3 cut(s) 184, 241, 403
SapI GCTCTTC 1 cut(s) 287
SaqAI TTAA 2 cut(s) 492, 569
SatI GCNGC 5 cut(s) 130, 167, 170, 335, 588
Sau3AI GATC 4 cut(s) 255, 517, 695, 727
Sau96I GGNCC 6 cut(s) 131, 219, 289, 321, 322, 734
ScaI AGTACT 1 cut(s) 242
SchI GAGTC 1 cut(s) 574
ScrFI CCNGG 1 cut(s) 732
SduI GDGCHC 4 cut(s) 152, 325, 612, 708
SetI ASST 6 cut(s) 195, 203, 234, 408, 423, 670
SfaNI GCATC 2 cut(s) 599, 700
SfoI GGCGCC 1 cut(s) 268
SgrAI CRCCGGYG 1 cut(s) 263
SinI GGWCC 1 cut(s) 734
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 1 cut(s) 34
SsiI CCGC 6 cut(s) 9, 85, 129, 158, 335, 430
SspDI GGCGCC 1 cut(s) 266
StyD4I CCNGG 1 cut(s) 730
TaaI ACNGT 1 cut(s) 448
TaiI ACGT 2 cut(s) 423, 670
TaqI TCGA 2 cut(s) 237, 593
TasI AATT 1 cut(s) 34
TatI WGTACW 1 cut(s) 240
TauI GCSGC 2 cut(s) 132, 337
TfiI GAWTC 2 cut(s) 655, 686
Tru1I TTAA 2 cut(s) 492, 569
Tru9I TTAA 2 cut(s) 492, 569
TscAI CASTG 2 cut(s) 370, 451
TseFI GTSAC 2 cut(s) 379, 577
TseI GCWGC 3 cut(s) 166, 169, 587
Tsp45I GTSAC 2 cut(s) 379, 577
TspDTI ATGAA 1 cut(s) 522
TspRI CASTG 2 cut(s) 370, 451
Tth111I GACNNNGTC 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 734
XapI RAATTY 1 cut(s) 34
XceI RCATGY 1 cut(s) 606
XcmI CCANNNNNNNNNTGG 1 cut(s) 370
ZrmI AGTACT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.