Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8000372.1

Orthogroup ID

OG0008080

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 486

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8000372.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 466 bp

atggccaccgcacttgtgctacacccaaccccaaatttcctctcaccagtccctccaaccccaaatcccaggcttcaccaccaccgctaccgcaccaaaataccaaaaatacccttctcctcgtggtcgttccgaaacggcggcccagcagaaacagagtgccctgttccgctggagcagcagcccataaacgagtaccagaacctctccacctccttccccttctcgtgggcctccggcgacctagtcgagtactgctctcgcctgatcgccaccggcgcctccttcgcgctcttcgtgggcctcccggtcgcctccttcggcgtcttcggggcccagtcggagccgctcaagcagtccctctacgcagtttccggtgggtttttggtggtcactctcgccgtggtgaggatgtacctcggttgggcttacgtcggcaaccgcttgcttagtgccactgttgaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1230

Protein Analysis

155

Amino Acids

16.95

Weight (kDa)

8.66

Isoelectric Point (pI)

42.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11840 AT5G11840 AT5G11840 AT5G11840
fragaria_vesca	FvH4_2g31951 FvH4_2g31951 FvH4_2g31951 FvH4_2g31951 FvH4_2g31951
malus_domestica	MD08G1061100.v1.1
prunus_persica	Prupe.1G412300_v2.0.a1
pyrus_communis	pycom08g05070
rosa_chinensis	RchiOBHm_Chr6g0310871
rosa_laevigata	RLG00000010455
rosa_multiflora	Rmu_co8000372.1_g000001 Rmu_sc0027713.1_g000001 Rmu_ssc0000395.1_g000004
rosa_roxburghii	Rroxscaffold_7G00158230
rosa_rugosa	Rorug06G0383700
rosa_samantha	Rh6AG497400 Rh6BG507500 Rh6CG513500 Rh6DG500100
rosa_wichuraiana	Rw6G043320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	278
AccBSI	CCGCTC	1 cut(s)	349
AccII	CGCG	1 cut(s)	290
AciI	CCGC	7 cut(s)	9, 85, 91, 141, 170, 347, 442
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	34
AcyI	GRCGYC	2 cut(s)	279, 324
AfaI	GTAC	3 cut(s)	197, 254, 416
AfiI	CCNNNNNNNGG	3 cut(s)	228, 408, 424
AgsI	TTSAA	1 cut(s)	464
AjnI	CCWGG	1 cut(s)	68
AoxI	GGCC	5 cut(s)	3, 142, 231, 301, 333
ApaI	GGGCCC	1 cut(s)	337
ApeKI	GCWGC	2 cut(s)	178, 181
ApoI	RAATTY	1 cut(s)	34
AspLEI	GCGC	2 cut(s)	281, 292
AspS9I	GGNCC	5 cut(s)	143, 231, 301, 333, 334
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	3 cut(s)	36, 68, 418
BaeGI	GKGCMC	2 cut(s)	164, 337
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	337
BauI	CACGAG	2 cut(s)	121, 226
BbsI	GAAGAC	1 cut(s)	319
BbvI	GCAGC	2 cut(s)	190, 193
BceAI	ACGGC	2 cut(s)	154, 386
BciT130I	CCWGG	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	308
BfaI	CTAG	1 cut(s)	245
BfoI	RGCGCY	1 cut(s)	282
BisI	GCNGC	4 cut(s)	142, 179, 182, 347
BlsI	GCNGC	4 cut(s)	143, 180, 183, 348
BmcAI	AGTACT	1 cut(s)	254
Bme1390I	CCNGG	2 cut(s)	70, 308
BmgT120I	GGNCC	5 cut(s)	143, 231, 301, 333, 334
BmiI	GGNNCC	4 cut(s)	280, 334, 335, 345
BmrFI	CCNGG	2 cut(s)	70, 308
BmrI	ACTGGG	1 cut(s)	331
BmuI	ACTGGG	1 cut(s)	331
BpiI	GAAGAC	1 cut(s)	319
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
BpmI	CTGGAG	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	335
BpuMI	CCSGG	1 cut(s)	308
BsaHI	GRCGYC	2 cut(s)	279, 324
BsaJI	CCNNGG	3 cut(s)	68, 402, 418
BsaWI	WCCGGW	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	3 cut(s)	228, 408, 424
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	2 cut(s)	47, 337
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	3 cut(s)	68, 402, 418
BseGI	GGATG	1 cut(s)	417
BseLI	CCNNNNNNNGG	3 cut(s)	228, 408, 424
BseNI	ACTGG	2 cut(s)	47, 337
BseRI	GAGGAG	1 cut(s)	109
BseSI	GKGCMC	2 cut(s)	164, 337
BseXI	GCAGC	2 cut(s)	190, 193
BseYI	CCCAGC	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	290
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	5 cut(s)	5, 144, 233, 303, 335
BshNI	GGYRCC	1 cut(s)	278
BsiEI	CGRYCG	1 cut(s)	312
BsiSI	CCGG	4 cut(s)	237, 276, 308, 375
BslFI	GGGAC	2 cut(s)	35, 343
BslI	CCNNNNNNNGG	3 cut(s)	228, 408, 424
BsmFI	GGGAC	2 cut(s)	35, 343
BsnI	GGCC	5 cut(s)	5, 144, 233, 303, 335
Bsp120I	GGGCCC	1 cut(s)	333
Bsp1286I	GDGCHC	2 cut(s)	164, 337
Bsp143I	GATC	1 cut(s)	267
BspACI	CCGC	7 cut(s)	9, 85, 91, 141, 170, 347, 442
BspANI	GGCC	5 cut(s)	5, 144, 233, 303, 335
BspFNI	CGCG	1 cut(s)	290
BspLI	GGNNCC	4 cut(s)	280, 334, 335, 345
BspQI	GCTCTTC	1 cut(s)	299
BspT107I	GGYRCC	1 cut(s)	278
BsrBI	CCGCTC	1 cut(s)	349
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	2 cut(s)	47, 337
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	3 cut(s)	68, 402, 418
BssMI	GATC	1 cut(s)	267
BssNI	GRCGYC	2 cut(s)	279, 324
BssSI	CACGAG	2 cut(s)	121, 226
Bst2BI	CACGAG	2 cut(s)	121, 226
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	1 cut(s)	460
Bst6I	CTCTTC	1 cut(s)	299
BstACI	GRCGYC	2 cut(s)	279, 324
BstC8I	GCNNGC	1 cut(s)	446
BstDEI	CTNAG	1 cut(s)	449
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	1 cut(s)	417
BstFNI	CGCG	1 cut(s)	290
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	2 cut(s)	281, 292
BstKTI	GATC	1 cut(s)	270
BstMBI	GATC	1 cut(s)	267
BstMCI	CGRYCG	1 cut(s)	312
BstMWI	GCNNNNNNNGC	4 cut(s)	178, 278, 287, 352
BstNI	CCWGG	1 cut(s)	70
BstSCI	CCNGG	2 cut(s)	68, 306
BstSLI	GKGCMC	2 cut(s)	164, 337
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	2 cut(s)	190, 193
BstV2I	GAAGAC	1 cut(s)	319
BsuRI	GGCC	5 cut(s)	5, 144, 233, 303, 335
BtgI	CCRYGG	1 cut(s)	402
BtsCI	GGATG	1 cut(s)	417
BtsIMutI	CAGTG	1 cut(s)	456
Cac8I	GCNNGC	1 cut(s)	446
CfoI	GCGC	2 cut(s)	281, 292
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	5 cut(s)	143, 231, 301, 333, 334
CseI	GACGC	1 cut(s)	313
Csp6I	GTAC	3 cut(s)	196, 253, 415
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviJI	RGCY	9 cut(s)	5, 73, 144, 184, 233, 303, 335, 346, 428
CviKI_1	RGCY	9 cut(s)	5, 73, 144, 184, 233, 303, 335, 346, 428
CviQI	GTAC	3 cut(s)	196, 253, 415
DdeI	CTNAG	1 cut(s)	449
DinI	GGCGCC	1 cut(s)	280
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
Eco24I	GRGCYC	1 cut(s)	337
EcoO109I	RGGNCCY	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	337
EgeI	GGCGCC	1 cut(s)	280
EheI	GGCGCC	1 cut(s)	280
FaiI	YATR	1 cut(s)	188
FaqI	GGGAC	2 cut(s)	35, 343
Fnu4HI	GCNGC	4 cut(s)	142, 179, 182, 347
FokI	GGATG	1 cut(s)	424
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	4 cut(s)	142, 179, 182, 347
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	2 cut(s)	280, 291
GluI	GCNGC	4 cut(s)	142, 179, 182, 347
GsaI	CCCAGC	1 cut(s)	149
GsuI	CTGGAG	1 cut(s)	194
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	5 cut(s)	5, 144, 233, 303, 335
HapII	CCGG	4 cut(s)	237, 276, 308, 375
HgaI	GACGC	1 cut(s)	313
HhaI	GCGC	2 cut(s)	281, 292
Hin1I	GRCGYC	2 cut(s)	279, 324
Hin6I	GCGC	2 cut(s)	279, 290
HinP1I	GCGC	2 cut(s)	279, 290
HpaII	CCGG	4 cut(s)	237, 276, 308, 375
HphI	GGTGA	3 cut(s)	36, 68, 418
Hpy188I	TCNGA	2 cut(s)	134, 343
Hpy99I	CGWCG	1 cut(s)	437
HpyAV	CCTTC	5 cut(s)	124, 226, 232, 295, 328
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4IV	ACGT	1 cut(s)	432
HpyF10VI	GCNNNNNNNGC	4 cut(s)	178, 278, 287, 352
HpyF3I	CTNAG	1 cut(s)	449
HpySE526I	ACGT	1 cut(s)	432
Hsp92I	GRCGYC	2 cut(s)	279, 324
HspAI	GCGC	2 cut(s)	279, 290
KasI	GGCGCC	1 cut(s)	278
Kzo9I	GATC	1 cut(s)	267
LguI	GCTCTTC	1 cut(s)	299
LmnI	GCTCC	2 cut(s)	175, 343
Lsp1109I	GCAGC	2 cut(s)	190, 193
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	1 cut(s)	269
MbiI	CCGCTC	1 cut(s)	349
MboI	GATC	1 cut(s)	267
MboII	GAAGA	2 cut(s)	286, 319
MhlI	GDGCHC	2 cut(s)	164, 337
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	34
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	279
MmeI	TCCRAC	2 cut(s)	80, 321
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	172
MspI	CCGG	4 cut(s)	237, 276, 308, 375
MspR9I	CCNGG	2 cut(s)	70, 308
MvaI	CCWGG	1 cut(s)	70
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	4 cut(s)	178, 278, 287, 352
NarI	GGCGCC	1 cut(s)	279
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	1 cut(s)	267
NlaIV	GGNNCC	4 cut(s)	280, 334, 335, 345
NmuCI	GTSAC	1 cut(s)	391
PciSI	GCTCTTC	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PflFI	GACNNNGTC	1 cut(s)	245
PkrI	GCNGC	4 cut(s)	143, 180, 183, 348
PluTI	GGCGCC	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	68
PspFI	CCCAGC	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	4 cut(s)	280, 334, 335, 345
PspOMI	GGGCCC	1 cut(s)	333
PspPI	GGNCC	5 cut(s)	143, 231, 301, 333, 334
PsyI	GACNNNGTC	1 cut(s)	245
RsaI	GTAC	3 cut(s)	197, 254, 416
RsaNI	GTAC	3 cut(s)	196, 253, 415
SapI	GCTCTTC	1 cut(s)	299
SatI	GCNGC	4 cut(s)	142, 179, 182, 347
Sau3AI	GATC	1 cut(s)	267
Sau96I	GGNCC	5 cut(s)	143, 231, 301, 333, 334
ScaI	AGTACT	1 cut(s)	254
ScrFI	CCNGG	2 cut(s)	70, 308
SduI	GDGCHC	2 cut(s)	164, 337
SetI	ASST	5 cut(s)	207, 215, 246, 420, 435
SfoI	GGCGCC	1 cut(s)	280
SgrAI	CRCCGGYG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	1 cut(s)	34
SsiI	CCGC	7 cut(s)	9, 85, 91, 141, 170, 347, 442
SspDI	GGCGCC	1 cut(s)	278
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	2 cut(s)	68, 306
TaaI	ACNGT	1 cut(s)	460
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	1 cut(s)	249
TasI	AATT	1 cut(s)	34
TatI	WGTACW	1 cut(s)	252
TauI	GCSGC	2 cut(s)	144, 349
TscAI	CASTG	1 cut(s)	463
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	2 cut(s)	178, 181
Tsp45I	GTSAC	1 cut(s)	391
TspRI	CASTG	1 cut(s)	463
Tth111I	GACNNNGTC	1 cut(s)	245
XapI	RAATTY	1 cut(s)	34
XspI	CTAG	1 cut(s)	245
ZrmI	AGTACT	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.