Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008080

Physical Location & Seq

Genomic Coordinates Reverse (-)

3884011 .. 3885711

Gene Structure 1701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g05070.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCCTCTGCAGTTCTTCACATTTCTTTCCCTCCACCCCCAACGGCTCATTTCTTTCCCTCCACCCCCAACTTCCTCCGGCCAATAACTCCCGCCCAAAAACCCGAACTCCACCGCAGCCGCCGTCGATATAGAATTGCCAAGATACCCCTATCTTCATCTTTCAGAAGAGGAAGCAACAGCCCAGCAGAGGCAGGCTGCCCTGTTCCGCCGGAGCAGCAGCCGATAAACGAGTACCAGAATCTCTCCACCTCCTTCCCCTTCTCCTGGGCAGCCGGCGACCTAGTCGAGTACTGCTCTCGACTGATCGCAACCGGGTCCTCTTTCGCTCTCCTCGTCGGCCTCCCGGTCGCCTCCTTCGGCGCCCTGGGTGGGCCCCAATCGGACCCACTGAGGCAGTCCCTGTACGCGGTTTCAAGTGGGTTTTTGGTGGTCACTCTCGCCGTCGTGAGGATGTACCTGGGTTGGGCTTACGTCGGCAATAGACTGCTCAGCGCCACCGTTGAATATGAAGAGACTGGATGGTATGATGGTCAGATGTGGGTGAAGACTGCTGAAGTTTTGGCGCGGGATCGGCTACTCGGTTCATTCTCTGTTAAGCCAGTGCTGAGCAGATTAAAGACTACACTCGTATTTCTTGCAGCGTCTATACTTTCATGTGTTCTTCTCCTCGTTTCCCTTGACGGAGGCCAAATTGAAGAAGCCGGGAATAGGGTTATACCCGGAGTTTACAATGATGATTCTGCAAGATCGTTCGAGCCTGACGCCTTTTGCGGTGAACCTGGTCTTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1230

Protein Analysis

265

Amino Acids

28.65

Weight (kDa)

7.67

Isoelectric Point (pI)

55.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11840 AT5G11840 AT5G11840 AT5G11840
fragaria_vesca	FvH4_2g31951 FvH4_2g31951 FvH4_2g31951 FvH4_2g31951 FvH4_2g31951
malus_domestica	MD08G1061100.v1.1
prunus_persica	Prupe.1G412300_v2.0.a1
pyrus_communis	pycom08g05070
rosa_chinensis	RchiOBHm_Chr6g0310871
rosa_laevigata	RLG00000010455
rosa_multiflora	Rmu_co8000372.1_g000001 Rmu_sc0027713.1_g000001 Rmu_ssc0000395.1_g000004
rosa_roxburghii	Rroxscaffold_7G00158230
rosa_rugosa	Rorug06G0383700
rosa_samantha	Rh6AG497400 Rh6BG507500 Rh6CG513500 Rh6DG500100
rosa_wichuraiana	Rw6G043320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	362
AccII	CGCG	2 cut(s)	410, 568
AciI	CCGC	7 cut(s)	93, 115, 121, 209, 410, 568, 774
AclWI	GGATC	1 cut(s)	579
AcoI	YGGCCR	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	576
AcyI	GRCGYC	2 cut(s)	363, 765
AfaI	GTAC	4 cut(s)	236, 293, 407, 458
AfiI	CCNNNNNNNGG	7 cut(s)	190, 267, 372, 409, 450, 466, 711
AgsI	TTSAA	3 cut(s)	417, 506, 698
AjnI	CCWGG	4 cut(s)	266, 366, 459, 781
Alw26I	GTCTC	1 cut(s)	509
AlwI	GGATC	1 cut(s)	579
AlwNI	CAGNNNCTG	1 cut(s)	403
AoxI	GGCC	5 cut(s)	3, 80, 340, 374, 688
ApaI	GGGCCC	1 cut(s)	378
ApeKI	GCWGC	6 cut(s)	117, 198, 217, 220, 272, 641
AspLEI	GCGC	3 cut(s)	365, 497, 568
AspS9I	GGNCC	4 cut(s)	318, 374, 375, 385
AsuC2I	CCSGG	4 cut(s)	316, 347, 706, 723
AsuHPI	GGTGA	2 cut(s)	556, 788
AvaII	GGWCC	2 cut(s)	318, 385
BaeGI	GKGCMC	1 cut(s)	378
BanI	GGYRCC	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	378
BbsI	GAAGAC	2 cut(s)	554, 779
BbvI	GCAGC	6 cut(s)	129, 185, 229, 232, 284, 653
BccI	CCATC	2 cut(s)	516, 524
BceAI	ACGGC	3 cut(s)	60, 108, 428
BciT130I	CCWGG	4 cut(s)	268, 368, 461, 783
BcnI	CCSGG	4 cut(s)	316, 347, 706, 723
BcoDI	GTCTC	1 cut(s)	509
BfaI	CTAG	1 cut(s)	284
BfmI	CTRYAG	1 cut(s)	9
BfoI	RGCGCY	2 cut(s)	366, 498
BisI	GCNGC	7 cut(s)	118, 121, 199, 218, 221, 273, 642
BlpI	GCTNAGC	2 cut(s)	491, 608
BlsI	GCNGC	7 cut(s)	119, 122, 200, 219, 222, 274, 643
BmcAI	AGTACT	1 cut(s)	293
Bme1390I	CCNGG	8 cut(s)	268, 316, 347, 368, 461, 706, 723, 783
Bme18I	GGWCC	2 cut(s)	318, 385
BmgT120I	GGNCC	4 cut(s)	318, 374, 375, 385
BmiI	GGNNCC	5 cut(s)	319, 364, 376, 377, 387
BmrFI	CCNGG	8 cut(s)	268, 316, 347, 368, 461, 706, 723, 783
BpiI	GAAGAC	2 cut(s)	554, 779
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
Bpu1102I	GCTNAGC	2 cut(s)	491, 608
BpuMI	CCSGG	4 cut(s)	316, 347, 706, 723
BsaHI	GRCGYC	2 cut(s)	363, 765
BsaJI	CCNNGG	4 cut(s)	267, 366, 367, 460
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bsc4I	CCNNNNNNNGG	7 cut(s)	190, 267, 372, 409, 450, 466, 711
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	2 cut(s)	523, 602
BseBI	CCWGG	4 cut(s)	268, 368, 461, 783
BseDI	CCNNGG	4 cut(s)	267, 366, 367, 460
BseGI	GGATG	2 cut(s)	459, 527
BseLI	CCNNNNNNNGG	7 cut(s)	190, 267, 372, 409, 450, 466, 711
BseMII	CTCAG	3 cut(s)	383, 505, 599
BseNI	ACTGG	2 cut(s)	523, 602
BseRI	GAGGAG	2 cut(s)	323, 659
BseSI	GKGCMC	1 cut(s)	378
BseXI	GCAGC	6 cut(s)	129, 185, 229, 232, 284, 653
BseYI	CCCAGC	1 cut(s)	184
Bsh1236I	CGCG	2 cut(s)	410, 568
Bsh1285I	CGRYCG	1 cut(s)	351
BshFI	GGCC	5 cut(s)	5, 82, 342, 376, 690
BshNI	GGYRCC	1 cut(s)	362
BsiEI	CGRYCG	1 cut(s)	351
BsiSI	CCGG	7 cut(s)	79, 212, 276, 315, 347, 705, 723
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	7 cut(s)	190, 267, 372, 409, 450, 466, 711
BsmAI	GTCTC	1 cut(s)	509
BsmFI	GGGAC	1 cut(s)	385
BsnI	GGCC	5 cut(s)	5, 82, 342, 376, 690
Bsp120I	GGGCCC	1 cut(s)	374
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	3 cut(s)	306, 571, 749
Bsp1720I	GCTNAGC	2 cut(s)	491, 608
BspACI	CCGC	7 cut(s)	93, 115, 121, 209, 410, 568, 774
BspANI	GGCC	5 cut(s)	5, 82, 342, 376, 690
BspCNI	CTCAG	3 cut(s)	384, 504, 600
BspFNI	CGCG	2 cut(s)	410, 568
BspLI	GGNNCC	5 cut(s)	319, 364, 376, 377, 387
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	1 cut(s)	579
BspT107I	GGYRCC	1 cut(s)	362
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	2 cut(s)	523, 602
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	4 cut(s)	267, 366, 367, 460
BssMI	GATC	3 cut(s)	306, 571, 749
BssNI	GRCGYC	2 cut(s)	363, 765
Bst2UI	CCWGG	4 cut(s)	268, 368, 461, 783
Bst4CI	ACNGT	1 cut(s)	502
Bst6I	CTCTTC	2 cut(s)	163, 507
BstACI	GRCGYC	2 cut(s)	363, 765
BstC8I	GCNNGC	2 cut(s)	196, 277
BstDEI	CTNAG	3 cut(s)	392, 491, 608
BstF5I	GGATG	2 cut(s)	459, 527
BstFNI	CGCG	2 cut(s)	410, 568
BstH2I	RGCGCY	2 cut(s)	366, 498
BstHHI	GCGC	3 cut(s)	365, 497, 568
BstKTI	GATC	3 cut(s)	309, 574, 752
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	3 cut(s)	306, 571, 749
BstMCI	CGRYCG	1 cut(s)	351
BstMWI	GCNNNNNNNGC	2 cut(s)	217, 574
BstNI	CCWGG	4 cut(s)	268, 368, 461, 783
BstSCI	CCNGG	8 cut(s)	266, 314, 345, 366, 459, 704, 721, 781
BstSFI	CTRYAG	1 cut(s)	9
BstSLI	GKGCMC	1 cut(s)	378
BstUI	CGCG	2 cut(s)	410, 568
BstV1I	GCAGC	6 cut(s)	129, 185, 229, 232, 284, 653
BstV2I	GAAGAC	2 cut(s)	554, 779
BsuRI	GGCC	5 cut(s)	5, 82, 342, 376, 690
BtsCI	GGATG	2 cut(s)	459, 527
BtsIMutI	CAGTG	2 cut(s)	389, 609
Cac8I	GCNNGC	2 cut(s)	196, 277
CaiI	CAGNNNCTG	1 cut(s)	403
CfoI	GCGC	3 cut(s)	365, 497, 568
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	4 cut(s)	318, 374, 375, 385
CseI	GACGC	2 cut(s)	633, 773
CsiI	ACCWGGT	1 cut(s)	781
Csp6I	GTAC	4 cut(s)	235, 292, 406, 457
CviAII	CATG	1 cut(s)	657
CviQI	GTAC	4 cut(s)	235, 292, 406, 457
DdeI	CTNAG	3 cut(s)	392, 491, 608
DinI	GGCGCC	1 cut(s)	364
DpnI	GATC	3 cut(s)	308, 573, 751
DpnII	GATC	3 cut(s)	306, 571, 749
EaeI	YGGCCR	1 cut(s)	80
Eam1104I	CTCTTC	2 cut(s)	163, 507
EarI	CTCTTC	2 cut(s)	163, 507
EciI	GGCGGA	1 cut(s)	198
Eco24I	GRGCYC	1 cut(s)	378
Eco47I	GGWCC	2 cut(s)	318, 385
Eco57I	CTGAAG	1 cut(s)	576
EcoO109I	RGGNCCY	2 cut(s)	318, 375
EcoRII	CCWGG	4 cut(s)	266, 366, 459, 781
EcoT38I	GRGCYC	1 cut(s)	378
EgeI	GGCGCC	1 cut(s)	364
EheI	GGCGCC	1 cut(s)	364
FaeI	CATG	1 cut(s)	660
FaiI	YATR	6 cut(s)	132, 510, 528, 650, 658, 719
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	1 cut(s)	656
FauI	CCCGC	2 cut(s)	100, 561
Fnu4HI	GCNGC	7 cut(s)	118, 121, 199, 218, 221, 273, 642
FokI	GGATG	2 cut(s)	466, 534
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	7 cut(s)	118, 121, 199, 218, 221, 273, 642
FspBI	CTAG	1 cut(s)	284
GlaI	GCGC	3 cut(s)	364, 496, 567
GluI	GCNGC	7 cut(s)	118, 121, 199, 218, 221, 273, 642
GsaI	CCCAGC	1 cut(s)	188
HaeII	RGCGCY	2 cut(s)	366, 498
HaeIII	GGCC	5 cut(s)	5, 82, 342, 376, 690
HapII	CCGG	7 cut(s)	79, 212, 276, 315, 347, 705, 723
HgaI	GACGC	2 cut(s)	633, 773
HhaI	GCGC	3 cut(s)	365, 497, 568
Hin1I	GRCGYC	2 cut(s)	363, 765
Hin1II	CATG	1 cut(s)	660
Hin6I	GCGC	3 cut(s)	363, 495, 566
HinP1I	GCGC	3 cut(s)	363, 495, 566
HinfI	GANTC	2 cut(s)	241, 740
HpaII	CCGG	7 cut(s)	79, 212, 276, 315, 347, 705, 723
HphI	GGTGA	2 cut(s)	556, 788
Hpy166II	GTNNAC	2 cut(s)	730, 779
Hpy188I	TCNGA	3 cut(s)	167, 385, 537
Hpy188III	TCNNGA	2 cut(s)	300, 448
Hpy8I	GTNNAC	2 cut(s)	730, 779
Hpy99I	CGWCG	4 cut(s)	129, 341, 449, 479
HpyAV	CCTTC	3 cut(s)	265, 271, 367
HpyCH4III	ACNGT	1 cut(s)	502
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	3 cut(s)	11, 641, 746
HpyF10VI	GCNNNNNNNGC	2 cut(s)	217, 574
HpyF3I	CTNAG	3 cut(s)	392, 491, 608
HpySE526I	ACGT	1 cut(s)	474
Hsp92I	GRCGYC	2 cut(s)	363, 765
Hsp92II	CATG	1 cut(s)	660
HspAI	GCGC	3 cut(s)	363, 495, 566
KasI	GGCGCC	1 cut(s)	362
KroI	GCCGGC	1 cut(s)	275
KroNI	GCCGGC	1 cut(s)	277
Kzo9I	GATC	3 cut(s)	306, 571, 749
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	6 cut(s)	129, 185, 229, 232, 284, 653
MabI	ACCWGGT	1 cut(s)	781
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	1 cut(s)	474
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	3 cut(s)	308, 573, 751
MboI	GATC	3 cut(s)	306, 571, 749
MboII	GAAGA	8 cut(s)	8, 147, 180, 524, 559, 656, 710, 779
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	2 cut(s)	135, 693
Mly113I	GGCGCC	1 cut(s)	363
MroNI	GCCGGC	1 cut(s)	275
MseI	TTAA	2 cut(s)	597, 617
MspI	CCGG	7 cut(s)	79, 212, 276, 315, 347, 705, 723
MspR9I	CCNGG	8 cut(s)	268, 316, 347, 368, 461, 706, 723, 783
MvaI	CCWGG	4 cut(s)	268, 368, 461, 783
MvnI	CGCG	2 cut(s)	410, 568
MwoI	GCNNNNNNNGC	2 cut(s)	217, 574
NaeI	GCCGGC	1 cut(s)	277
NarI	GGCGCC	1 cut(s)	363
NciI	CCSGG	4 cut(s)	316, 347, 706, 723
NdeII	GATC	3 cut(s)	306, 571, 749
NgoMIV	GCCGGC	1 cut(s)	275
NlaIII	CATG	1 cut(s)	660
NlaIV	GGNNCC	5 cut(s)	319, 364, 376, 377, 387
NmuCI	GTSAC	1 cut(s)	433
PasI	CCCWGGG	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PdiI	GCCGGC	1 cut(s)	277
PfeI	GAWTC	2 cut(s)	241, 740
PflFI	GACNNNGTC	1 cut(s)	284
PkrI	GCNGC	7 cut(s)	119, 122, 200, 219, 222, 274, 643
PluTI	GGCGCC	1 cut(s)	366
PpuMI	RGGWCCY	1 cut(s)	318
Psp5II	RGGWCCY	1 cut(s)	318
Psp6I	CCWGG	4 cut(s)	266, 366, 459, 781
PspFI	CCCAGC	1 cut(s)	184
PspGI	CCWGG	4 cut(s)	266, 366, 459, 781
PspN4I	GGNNCC	5 cut(s)	319, 364, 376, 377, 387
PspOMI	GGGCCC	1 cut(s)	374
PspPI	GGNCC	4 cut(s)	318, 374, 375, 385
PspPPI	RGGWCCY	1 cut(s)	318
PstI	CTGCAG	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	403
PsyI	GACNNNGTC	1 cut(s)	284
RsaI	GTAC	4 cut(s)	236, 293, 407, 458
RsaNI	GTAC	4 cut(s)	235, 292, 406, 457
SaqAI	TTAA	2 cut(s)	597, 617
SatI	GCNGC	7 cut(s)	118, 121, 199, 218, 221, 273, 642
Sau3AI	GATC	3 cut(s)	306, 571, 749
Sau96I	GGNCC	4 cut(s)	318, 374, 375, 385
ScaI	AGTACT	1 cut(s)	293
ScrFI	CCNGG	8 cut(s)	268, 316, 347, 368, 461, 706, 723, 783
SduI	GDGCHC	1 cut(s)	378
SetI	ASST	5 cut(s)	254, 285, 462, 477, 784
SexAI	ACCWGGT	1 cut(s)	781
SfcI	CTRYAG	1 cut(s)	9
SfoI	GGCGCC	1 cut(s)	364
SinI	GGWCC	2 cut(s)	318, 385
Sse9I	AATT	2 cut(s)	135, 693
SsiI	CCGC	7 cut(s)	93, 115, 121, 209, 410, 568, 774
SspDI	GGCGCC	1 cut(s)	362
SspMI	CTAG	1 cut(s)	284
StyD4I	CCNGG	8 cut(s)	266, 314, 345, 366, 459, 704, 721, 781
TaaI	ACNGT	1 cut(s)	502
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	4 cut(s)	127, 288, 301, 756
TasI	AATT	2 cut(s)	135, 693
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	2 cut(s)	241, 740
Tru1I	TTAA	2 cut(s)	597, 617
Tru9I	TTAA	2 cut(s)	597, 617
TscAI	CASTG	2 cut(s)	396, 609
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	6 cut(s)	117, 198, 217, 220, 272, 641
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	4 cut(s)	147, 525, 576, 645
TspGWI	ACGGA	1 cut(s)	699
TspRI	CASTG	2 cut(s)	396, 609
Tth111I	GACNNNGTC	1 cut(s)	284
VpaK11BI	GGWCC	2 cut(s)	318, 385
XspI	CTAG	1 cut(s)	284
ZrmI	AGTACT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.