Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008080

Physical Location & Seq

Genomic Coordinates Forward (+)

35975364 .. 35977087

Gene Structure 1724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G412300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCCTCTGCTGTTCTGTACACATCACCAAAACCACCTCCACCGACTCTCCTCTTTCCCTCCGCACCAACCATTTCAACTCCAAGCTTCAGGTATCACCGCCGCCACTGCAGTAGAATTCCCAAAATACCCTTGTCGTCCTCGTTCAGAAACGGAAGCAACAGCCCGGCGGAAACAGGGTGCCCTGTGCCGCCGGAGCAGCAGCCTATAAACGAGTTCCAGAATCTGTCGACCTCCTTTCCCTTCTCCTGGGCCTCCGGCGACCTCATAGAGTACTGCTCTCGACTGATTGCAACTGGGTCTTCTTTTGCTCTGCTTGTTGGCCTCCCGGTTGCCTCGGTCGGTGCCTTGGGCGCCCAATCGGAGCCGTTGAAGCAGTCTCTGTACGCAGTTTCAAGTGGGTTTCTTGTGGTCACTCTTGCCGTCGTGAGGATGTACCTGGGTTGGGCTTATGTGGGCAATCGCTTGCTTAGCGCCACTGTTGAATATGAAGAGACTGGATGGTACGATGGCCAGATGTGGGTGAAGACTGCCGAGGTTTTGGCTCGTGACCGGCTACTTGGTTCATTTGCTGTTACGCCTGTGCTGGGCAGATTGAAGGTCACACTGGTATGCCTTGCGGCAGCCATACTTTCATGCGTTGTGCTCCTCATTTCCATTGATGGAGGAGGCCAAACTGAAGAAGCTGGCAATAGGGTTATACATGGAGTTTACAGTGACGAATCTGCAAGATCATTCGAGCCTGACGCCTTCTGTGGCGAAGCTGGCCTTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1230

Protein Analysis

259

Amino Acids

27.59

Weight (kDa)

5.94

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11840 AT5G11840 AT5G11840 AT5G11840
fragaria_vesca	FvH4_2g31951 FvH4_2g31951 FvH4_2g31951 FvH4_2g31951 FvH4_2g31951
malus_domestica	MD08G1061100.v1.1
prunus_persica	Prupe.1G412300_v2.0.a1
pyrus_communis	pycom08g05070
rosa_chinensis	RchiOBHm_Chr6g0310871
rosa_laevigata	RLG00000010455
rosa_multiflora	Rmu_co8000372.1_g000001 Rmu_sc0027713.1_g000001 Rmu_ssc0000395.1_g000004
rosa_roxburghii	Rroxscaffold_7G00158230
rosa_rugosa	Rorug06G0383700
rosa_samantha	Rh6AG497400 Rh6BG507500 Rh6CG513500 Rh6DG500100
rosa_wichuraiana	Rw6G043320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	180, 344, 353
AccI	GTMKAC	1 cut(s)	230
AciI	CCGC	6 cut(s)	63, 100, 103, 170, 191, 620
AcoI	YGGCCR	1 cut(s)	511
AcsI	RAATTY	1 cut(s)	117
AcuI	CTGAAG	2 cut(s)	73, 699
AcyI	GRCGYC	2 cut(s)	354, 747
AfaI	GTAC	5 cut(s)	20, 275, 386, 437, 506
AfiI	CCNNNNNNNGG	5 cut(s)	249, 429, 445, 520, 587
AgsI	TTSAA	5 cut(s)	78, 373, 396, 485, 598
AjnI	CCWGG	2 cut(s)	248, 438
AluBI	AGCT	3 cut(s)	87, 686, 764
AluI	AGCT	3 cut(s)	87, 686, 764
Alw21I	GWGCWC	1 cut(s)	648
Alw26I	GTCTC	2 cut(s)	384, 488
AlwNI	CAGNNNCTG	2 cut(s)	226, 382
AoxI	GGCC	6 cut(s)	3, 252, 322, 511, 670, 766
ApeKI	GCWGC	3 cut(s)	199, 202, 623
ApoI	RAATTY	1 cut(s)	117
AspLEI	GCGC	2 cut(s)	356, 476
AspS9I	GGNCC	1 cut(s)	252
AsuC2I	CCSGG	2 cut(s)	167, 329
AsuHPI	GGTGA	3 cut(s)	18, 89, 535
BaeGI	GKGCMC	1 cut(s)	185
BalI	TGGCCA	1 cut(s)	513
BanI	GGYRCC	3 cut(s)	180, 344, 353
BauI	CACGAG	1 cut(s)	546
BbsI	GAAGAC	2 cut(s)	294, 533
Bbv12I	GWGCWC	1 cut(s)	648
BbvI	GCAGC	3 cut(s)	211, 214, 635
BccI	CCATC	3 cut(s)	495, 503, 656
BceAI	ACGGC	2 cut(s)	352, 407
BciT130I	CCWGG	2 cut(s)	250, 440
BcnI	CCSGG	2 cut(s)	167, 329
BcoDI	GTCTC	2 cut(s)	384, 488
BfmI	CTRYAG	1 cut(s)	109
BfoI	RGCGCY	2 cut(s)	357, 477
BisI	GCNGC	6 cut(s)	103, 191, 200, 203, 621, 624
BlpI	GCTNAGC	1 cut(s)	470
BlsI	GCNGC	6 cut(s)	104, 192, 201, 204, 622, 625
BmcAI	AGTACT	1 cut(s)	275
Bme1390I	CCNGG	4 cut(s)	167, 250, 329, 440
BmgT120I	GGNCC	1 cut(s)	252
BmiI	GGNNCC	4 cut(s)	182, 346, 355, 366
BmrFI	CCNGG	4 cut(s)	167, 250, 329, 440
BmrI	ACTGGG	1 cut(s)	306
BmuI	ACTGGG	1 cut(s)	306
BpiI	GAAGAC	2 cut(s)	294, 533
BplI	GAGNNNNNCTC	2 cut(s)	263, 295
Bpu1102I	GCTNAGC	1 cut(s)	470
BpuMI	CCSGG	2 cut(s)	167, 329
BsaHI	GRCGYC	2 cut(s)	354, 747
BsaJI	CCNNGG	5 cut(s)	249, 336, 348, 439, 534
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	5 cut(s)	249, 429, 445, 520, 587
Bse118I	RCCGGY	1 cut(s)	552
Bse1I	ACTGG	3 cut(s)	301, 502, 612
BseBI	CCWGG	2 cut(s)	250, 440
BseDI	CCNNGG	5 cut(s)	249, 336, 348, 439, 534
BseGI	GGATG	2 cut(s)	438, 506
BseLI	CCNNNNNNNGG	5 cut(s)	249, 429, 445, 520, 587
BseNI	ACTGG	3 cut(s)	301, 502, 612
BseRI	GAGGAG	3 cut(s)	41, 638, 681
BseSI	GKGCMC	1 cut(s)	185
BseXI	GCAGC	3 cut(s)	211, 214, 635
BseYI	CCCAGC	1 cut(s)	586
Bsh1285I	CGRYCG	1 cut(s)	342
BshFI	GGCC	6 cut(s)	5, 254, 324, 513, 672, 768
BshNI	GGYRCC	3 cut(s)	180, 344, 353
BsiEI	CGRYCG	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	648
BsiSI	CCGG	5 cut(s)	167, 194, 258, 329, 553
BslI	CCNNNNNNNGG	5 cut(s)	249, 429, 445, 520, 587
BsmAI	GTCTC	2 cut(s)	384, 488
BsnI	GGCC	6 cut(s)	5, 254, 324, 513, 672, 768
Bsp1286I	GDGCHC	2 cut(s)	185, 648
Bsp1407I	TGTACA	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	731
Bsp1720I	GCTNAGC	1 cut(s)	470
BspACI	CCGC	6 cut(s)	63, 100, 103, 170, 191, 620
BspANI	GGCC	6 cut(s)	5, 254, 324, 513, 672, 768
BspLI	GGNNCC	4 cut(s)	182, 346, 355, 366
BspMAI	CTGCAG	1 cut(s)	113
BspT107I	GGYRCC	3 cut(s)	180, 344, 353
BsrFI	RCCGGY	1 cut(s)	552
BsrGI	TGTACA	1 cut(s)	18
BsrI	ACTGG	3 cut(s)	301, 502, 612
BssAI	RCCGGY	1 cut(s)	552
BssECI	CCNNGG	5 cut(s)	249, 336, 348, 439, 534
BssMI	GATC	1 cut(s)	731
BssNI	GRCGYC	2 cut(s)	354, 747
BssSI	CACGAG	1 cut(s)	546
BssT1I	CCWWGG	1 cut(s)	348
Bst2BI	CACGAG	1 cut(s)	546
Bst2UI	CCWGG	2 cut(s)	250, 440
Bst4CI	ACNGT	2 cut(s)	481, 716
Bst6I	CTCTTC	1 cut(s)	486
BstACI	GRCGYC	2 cut(s)	354, 747
BstAUI	TGTACA	1 cut(s)	18
BstC8I	GCNNGC	3 cut(s)	467, 688, 766
BstDEI	CTNAG	1 cut(s)	470
BstF5I	GGATG	2 cut(s)	438, 506
BstH2I	RGCGCY	2 cut(s)	357, 477
BstHHI	GCGC	2 cut(s)	356, 476
BstKTI	GATC	1 cut(s)	734
BstMAI	GTCTC	2 cut(s)	384, 488
BstMBI	GATC	1 cut(s)	731
BstMCI	CGRYCG	1 cut(s)	342
BstMWI	GCNNNNNNNGC	7 cut(s)	108, 196, 199, 353, 373, 471, 765
BstNI	CCWGG	2 cut(s)	250, 440
BstSCI	CCNGG	4 cut(s)	165, 248, 327, 438
BstSFI	CTRYAG	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	185
BstV1I	GCAGC	3 cut(s)	211, 214, 635
BstV2I	GAAGAC	2 cut(s)	294, 533
BsuRI	GGCC	6 cut(s)	5, 254, 324, 513, 672, 768
BtsCI	GGATG	2 cut(s)	438, 506
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	4 cut(s)	106, 477, 605, 721
Cac8I	GCNNGC	3 cut(s)	467, 688, 766
CaiI	CAGNNNCTG	2 cut(s)	226, 382
CfoI	GCGC	2 cut(s)	356, 476
Cfr10I	RCCGGY	1 cut(s)	552
Cfr13I	GGNCC	1 cut(s)	252
CseI	GACGC	1 cut(s)	755
Csp6I	GTAC	5 cut(s)	19, 274, 385, 436, 505
CviAII	CATG	2 cut(s)	636, 704
CviQI	GTAC	5 cut(s)	19, 274, 385, 436, 505
DdeI	CTNAG	1 cut(s)	470
DinI	GGCGCC	1 cut(s)	355
DpnI	GATC	1 cut(s)	733
DpnII	GATC	1 cut(s)	731
EaeI	YGGCCR	1 cut(s)	511
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
EciI	GGCGGA	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	348
Eco57I	CTGAAG	2 cut(s)	73, 699
EcoRI	GAATTC	1 cut(s)	117
EcoRII	CCWGG	2 cut(s)	248, 438
EcoT14I	CCWWGG	1 cut(s)	348
EgeI	GGCGCC	1 cut(s)	355
EheI	GGCGCC	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	2 cut(s)	639, 707
FaiI	YATR	9 cut(s)	209, 269, 453, 489, 613, 629, 637, 701, 705
FalI	AAGNNNNNCTT	1 cut(s)	753
FatI	CATG	2 cut(s)	635, 703
FblI	GTMKAC	1 cut(s)	230
Fnu4HI	GCNGC	6 cut(s)	103, 191, 200, 203, 621, 624
FokI	GGATG	2 cut(s)	445, 513
Fsp4HI	GCNGC	6 cut(s)	103, 191, 200, 203, 621, 624
GlaI	GCGC	2 cut(s)	355, 475
GluI	GCNGC	6 cut(s)	103, 191, 200, 203, 621, 624
GsaI	CCCAGC	1 cut(s)	590
HaeII	RGCGCY	2 cut(s)	357, 477
HaeIII	GGCC	6 cut(s)	5, 254, 324, 513, 672, 768
HapII	CCGG	5 cut(s)	167, 194, 258, 329, 553
HgaI	GACGC	1 cut(s)	755
HhaI	GCGC	2 cut(s)	356, 476
Hin1I	GRCGYC	2 cut(s)	354, 747
Hin1II	CATG	2 cut(s)	639, 707
Hin6I	GCGC	2 cut(s)	354, 474
HinP1I	GCGC	2 cut(s)	354, 474
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HindIII	AAGCTT	1 cut(s)	85
HinfI	GANTC	3 cut(s)	46, 223, 722
HpaII	CCGG	5 cut(s)	167, 194, 258, 329, 553
HphI	GGTGA	3 cut(s)	18, 89, 535
Hpy166II	GTNNAC	3 cut(s)	21, 231, 712
Hpy188I	TCNGA	2 cut(s)	149, 364
Hpy188III	TCNNGA	4 cut(s)	220, 282, 427, 548
Hpy8I	GTNNAC	3 cut(s)	21, 231, 712
Hpy99I	CGWCG	1 cut(s)	428
HpyAV	CCTTC	3 cut(s)	253, 592, 760
HpyCH4III	ACNGT	2 cut(s)	481, 716
HpyCH4V	TGCA	3 cut(s)	111, 293, 728
HpyF10VI	GCNNNNNNNGC	7 cut(s)	108, 196, 199, 353, 373, 471, 765
HpyF3I	CTNAG	1 cut(s)	470
Hsp92I	GRCGYC	2 cut(s)	354, 747
Hsp92II	CATG	2 cut(s)	639, 707
HspAI	GCGC	2 cut(s)	354, 474
KasI	GGCGCC	1 cut(s)	353
Kzo9I	GATC	1 cut(s)	731
LmnI	GCTCC	3 cut(s)	196, 364, 651
Lsp1109I	GCAGC	3 cut(s)	211, 214, 635
MaeIII	GTNAC	5 cut(s)	412, 548, 574, 601, 716
MalI	GATC	1 cut(s)	733
MboI	GATC	1 cut(s)	731
MboII	GAAGA	4 cut(s)	294, 503, 538, 692
MhlI	GDGCHC	2 cut(s)	185, 648
MlsI	TGGCCA	1 cut(s)	513
MluCI	AATT	1 cut(s)	117
MluNI	TGGCCA	1 cut(s)	513
Mly113I	GGCGCC	1 cut(s)	354
MlyI	GAGTC	1 cut(s)	40
Mox20I	TGGCCA	1 cut(s)	513
MscI	TGGCCA	1 cut(s)	513
MslI	CAYNNNNRTG	1 cut(s)	610
Msp20I	TGGCCA	1 cut(s)	513
MspI	CCGG	5 cut(s)	167, 194, 258, 329, 553
MspR9I	CCNGG	4 cut(s)	167, 250, 329, 440
MvaI	CCWGG	2 cut(s)	250, 440
MwoI	GCNNNNNNNGC	7 cut(s)	108, 196, 199, 353, 373, 471, 765
NarI	GGCGCC	1 cut(s)	354
NciI	CCSGG	2 cut(s)	167, 329
NdeII	GATC	1 cut(s)	731
NlaIII	CATG	2 cut(s)	639, 707
NlaIV	GGNNCC	4 cut(s)	182, 346, 355, 366
NmeAIII	GCCGAG	1 cut(s)	559
NmuCI	GTSAC	4 cut(s)	412, 548, 601, 716
PfeI	GAWTC	2 cut(s)	223, 722
PkrI	GCNGC	6 cut(s)	104, 192, 201, 204, 622, 625
PleI	GAGTC	1 cut(s)	40
PluTI	GGCGCC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	40
Psp6I	CCWGG	2 cut(s)	248, 438
PspFI	CCCAGC	1 cut(s)	586
PspGI	CCWGG	2 cut(s)	248, 438
PspN4I	GGNNCC	4 cut(s)	182, 346, 355, 366
PspPI	GGNCC	1 cut(s)	252
PstI	CTGCAG	1 cut(s)	113
PstNI	CAGNNNCTG	2 cut(s)	226, 382
RsaI	GTAC	5 cut(s)	20, 275, 386, 437, 506
RsaNI	GTAC	5 cut(s)	19, 274, 385, 436, 505
RseI	CAYNNNNRTG	1 cut(s)	610
SalI	GTCGAC	1 cut(s)	229
SatI	GCNGC	6 cut(s)	103, 191, 200, 203, 621, 624
Sau3AI	GATC	1 cut(s)	731
Sau96I	GGNCC	1 cut(s)	252
ScaI	AGTACT	1 cut(s)	275
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	4 cut(s)	167, 250, 329, 440
SduI	GDGCHC	2 cut(s)	185, 648
SfcI	CTRYAG	1 cut(s)	109
SfoI	GGCGCC	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	610
Sse9I	AATT	1 cut(s)	117
SsiI	CCGC	6 cut(s)	63, 100, 103, 170, 191, 620
SspDI	GGCGCC	1 cut(s)	353
StyD4I	CCNGG	4 cut(s)	165, 248, 327, 438
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	2 cut(s)	481, 716
TaqI	TCGA	3 cut(s)	230, 283, 738
TaqII	GACCGA	1 cut(s)	328
TasI	AATT	1 cut(s)	117
TatI	WGTACW	2 cut(s)	18, 273
TauI	GCSGC	3 cut(s)	105, 193, 623
TfiI	GAWTC	2 cut(s)	223, 722
TscAI	CASTG	4 cut(s)	113, 484, 612, 721
TseFI	GTSAC	4 cut(s)	412, 548, 601, 716
TseI	GCWGC	3 cut(s)	199, 202, 623
Tsp45I	GTSAC	4 cut(s)	412, 548, 601, 716
TspDTI	ATGAA	3 cut(s)	504, 555, 624
TspGWI	ACGGA	1 cut(s)	168
TspRI	CASTG	4 cut(s)	113, 484, 612, 721
XapI	RAATTY	1 cut(s)	117
XmiI	GTMKAC	1 cut(s)	230
ZrmI	AGTACT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.