AT5G12410

THUMP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012337
Physical Location & Seq
Reverse (-)
4021815 .. 4024218
2404 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G12410.1

Sequence Viewer

Length: 1131 bp
ATGGCTTCCGGTGACCAGAGCAAGAAGAGAAAACAGCATTATCGCCCTCAAAACAGACCAGTGAAGAAGAAGGGATCTTACCCTTTGAAGCCAGGTGTTCAAGGTTTTTTCATCTCTTGCGATGGCGGACGCGAATTCCAAGCTGCTCAGGAAGCTATTAACGTCATTGATTCCTTTTTCGAGGAGCTAATACAAGGGACTGACTCGAAAGTGAATCCTGGTTTGTTTGGTAATCCAATAAACAAAAAAGTTACATTTTCGTATAGCGAGGATGAGGATGAGGAGGAAGATGAGAGTAATAATGGCGAGGAAGAGGAAAACAAAGGAGATGGGGATAAGGCAGTAGTGAGTGAAGGCGGTAATGATCTAGTGAATGAGAAAGAAATAGCTAGTGAAGGAGTTAATGATCAAGTGAATGAGAAAGAAATAGCAAGTGAAGGGTCATGTGAAGTCAAACAATTGGCAGAAAATGAGACTGTAAAAGAGGAAGAAGATAAAGGGAATCAGAAGAATGGTGGAGATGAACCTCCTAGAAAGAAGACGTGTACGGAAGAAGCAAATCCTTTAGCAAAAGTAAACGAAAATGCAGAGAAGTCTATTGATAAGTTGATTGAAGCTGAACTAAAAGAACTTGGAGACAAGAGTAAGAGACGGTTCATGAAGTTAGATCCGGGTTGCAACGGTCTGGTCTTCATCCAAATGAAAAAGAGAGATGGTGACCCAAGTCCCAAAGAAATTGTACAGCATGCTATGACTTCTGCTGCTGCAACAAAAAAGCATATGTCAAGGTTCATCCTAAGACTTCTACCAATTGAAGTGTCGTGTTACCCTTCAGAGGAAGAAATTTCAAGAGCCATCAAGCCGCTTGTAGAACAGTACTTCCCCATTGAGACCGAAAATCCCCGGAAATTTGCTGTGTTGTATGGAGCGCGTGCTAACACAGGGCTTGATAGGATGAAAATAATAAACACGATCGCCAAATCTATTCCTGCCCCTCACAAAGTTGATTTGAGCAATCCGGAGATGACGATCGTGGTGGAAATTATTAAGACAGTGTGCTTAATTGGAGTGGTAGAGAAGTACAAGGAGCTAGCAAAGTACAACCTCAGGCAGCTCACGTCGACCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
THUMP

Protein Analysis

376

Amino Acids

41.94

Weight (kDa)

5.25

Isoelectric Point (pI)

50.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
THUMP PF02926 278 - 358 1.4e-14 THUMP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12410
fragaria_vesca FvH4_3g28330 FvH4_3g28330
malus_domestica MD03G1170300.v1.1 MD11G1187800.v1.1
prunus_persica Prupe.4G256800_v2.0.a1
pyrus_communis pycom03g12680 pycom11g16450
rosa_chinensis RchiOBHm_Chr5g0051211
rosa_laevigata RLG00000034763
rosa_multiflora Rmu_sc0002385.1_g000021 Rmu_sc0042180.1_g000001
rosa_roxburghii Rroxscaffold_1G00029150
rosa_rugosa Rorug05G0266700
rosa_samantha Rh5AG339000 Rh5BG348900 Rh5CG375900 Rh5DG361800
rosa_wichuraiana Rw5G032030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1121
AccII CGCG 2 cut(s) 132, 931
AccIII TCCGGA 1 cut(s) 1018
AciI CCGC 3 cut(s) 126, 357, 863
AclWI GGATC 2 cut(s) 82, 662
AcsI RAATTY 3 cut(s) 134, 843, 908
AcuI CTGAAG 1 cut(s) 816
AfaI GTAC 5 cut(s) 547, 741, 878, 1082, 1100
AfiI CCNNNNNNNGG 1 cut(s) 835
AflIII ACRYGT 1 cut(s) 542
AgsI TTSAA 5 cut(s) 88, 101, 614, 815, 849
AjiI CACGTC 2 cut(s) 543, 1119
AjnI CCWGG 2 cut(s) 91, 217
AloI GAACNNNNNNTCC 2 cut(s) 864, 896
AluBI AGCT 7 cut(s) 143, 155, 187, 389, 617, 1090, 1114
AluI AGCT 7 cut(s) 143, 155, 187, 389, 617, 1090, 1114
Alw26I GTCTC 4 cut(s) 467, 630, 643, 884
AlwI GGATC 2 cut(s) 82, 662
Aor13HI TCCGGA 1 cut(s) 1018
ApeKI GCWGC 4 cut(s) 143, 761, 764, 1111
ApoI RAATTY 3 cut(s) 134, 843, 908
AspLEI GCGC 1 cut(s) 931
AsuC2I CCSGG 2 cut(s) 672, 904
AsuHPI GGTGA 2 cut(s) 23, 728
AsuNHI GCTAGC 1 cut(s) 1090
AxyI CCTNAGG 1 cut(s) 1106
BarI GAAGNNNNNNTAC 2 cut(s) 62, 94
BbsI GAAGAC 2 cut(s) 545, 682
BbvI GCAGC 4 cut(s) 130, 748, 751, 1123
BccI CCATC 4 cut(s) 116, 323, 707, 863
BciT130I CCWGG 2 cut(s) 93, 219
BclI TGATCA 1 cut(s) 406
BcnI CCSGG 2 cut(s) 672, 904
BcoDI GTCTC 4 cut(s) 467, 630, 643, 884
BfaI CTAG 4 cut(s) 368, 390, 531, 1091
BisI GCNGC 5 cut(s) 144, 762, 765, 863, 1112
BlsI GCNGC 5 cut(s) 145, 763, 766, 864, 1113
BmcAI AGTACT 1 cut(s) 878
Bme1390I CCNGG 4 cut(s) 93, 219, 672, 904
BmgBI CACGTC 2 cut(s) 543, 1119
BmrFI CCNGG 4 cut(s) 93, 219, 672, 904
BmtI GCTAGC 1 cut(s) 1094
BoxI GACNNNNGTC 1 cut(s) 723
BpiI GAAGAC 2 cut(s) 545, 682
Bpu10I CCTNAGC 1 cut(s) 147
BpuMI CCSGG 2 cut(s) 672, 904
BsaBI GATNNNNATC 1 cut(s) 1028
BsaI GGTCTC 1 cut(s) 884
BsaJI CCNNGG 1 cut(s) 902
BsaWI WCCGGW 2 cut(s) 8, 1018
Bsc4I CCNNNNNNNGG 1 cut(s) 835
Bse1I ACTGG 1 cut(s) 59
Bse21I CCTNAGG 1 cut(s) 1106
Bse8I GATNNNNATC 1 cut(s) 1028
BseAI TCCGGA 1 cut(s) 1018
BseBI CCWGG 2 cut(s) 93, 219
BseDI CCNNGG 1 cut(s) 902
BseGI GGATG 5 cut(s) 277, 283, 693, 792, 960
BseJI GATNNNNATC 1 cut(s) 1028
BseLI CCNNNNNNNGG 1 cut(s) 835
BseMII CTCAG 2 cut(s) 161, 1120
BseNI ACTGG 1 cut(s) 59
BseRI GAGGAG 2 cut(s) 197, 296
BseXI GCAGC 4 cut(s) 130, 748, 751, 1123
Bsh1236I CGCG 2 cut(s) 132, 931
Bsh1285I CGRYCG 2 cut(s) 975, 1032
BsiEI CGRYCG 2 cut(s) 975, 1032
BsiSI CCGG 4 cut(s) 9, 671, 904, 1019
BslFI GGGAC 2 cut(s) 211, 711
BslI CCNNNNNNNGG 1 cut(s) 835
BsmAI GTCTC 4 cut(s) 467, 630, 643, 884
BsmBI CGTCTC 1 cut(s) 643
BsmFI GGGAC 2 cut(s) 211, 711
Bso31I GGTCTC 1 cut(s) 884
Bsp13I TCCGGA 1 cut(s) 1018
Bsp1407I TGTACA 1 cut(s) 739
Bsp143I GATC 6 cut(s) 74, 364, 406, 667, 972, 1029
BspACI CCGC 3 cut(s) 126, 357, 863
BspCNI CTCAG 2 cut(s) 160, 1119
BspEI TCCGGA 1 cut(s) 1018
BspFNI CGCG 2 cut(s) 132, 931
BspHI TCATGA 1 cut(s) 657
BspOI GCTAGC 1 cut(s) 1094
BspPI GGATC 2 cut(s) 82, 662
BspTNI GGTCTC 1 cut(s) 884
BsrGI TGTACA 1 cut(s) 739
BsrI ACTGG 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 902
BssMI GATC 6 cut(s) 74, 364, 406, 667, 972, 1029
Bst2UI CCWGG 2 cut(s) 93, 219
Bst4CI ACNGT 5 cut(s) 478, 654, 683, 876, 1054
Bst6I CTCTTC 2 cut(s) 20, 306
BstAUI TGTACA 1 cut(s) 739
BstC8I GCNNGC 3 cut(s) 747, 933, 1092
BstDEI CTNAG 3 cut(s) 147, 797, 1106
BstEII GGTNACC 2 cut(s) 11, 716
BstF5I GGATG 5 cut(s) 277, 283, 693, 792, 960
BstFNI CGCG 2 cut(s) 132, 931
BstHHI GCGC 1 cut(s) 931
BstKTI GATC 6 cut(s) 77, 367, 409, 670, 975, 1032
BstMAI GTCTC 4 cut(s) 467, 630, 643, 884
BstMBI GATC 6 cut(s) 74, 364, 406, 667, 972, 1029
BstMCI CGRYCG 2 cut(s) 975, 1032
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 2 cut(s) 93, 219
BstNSI RCATGY 1 cut(s) 749
BstPAI GACNNNNGTC 1 cut(s) 723
BstPI GGTNACC 2 cut(s) 11, 716
BstSCI CCNGG 4 cut(s) 91, 217, 670, 902
BstUI CGCG 2 cut(s) 132, 931
BstV1I GCAGC 4 cut(s) 130, 748, 751, 1123
BstV2I GAAGAC 2 cut(s) 545, 682
BstX2I RGATCY 2 cut(s) 74, 667
BstYI RGATCY 2 cut(s) 74, 667
Bsu36I CCTNAGG 1 cut(s) 1106
BtgZI GCGATG 1 cut(s) 135
BtrI CACGTC 2 cut(s) 543, 1119
BtsCI GGATG 5 cut(s) 277, 283, 693, 792, 960
BtsIMutI CAGTG 2 cut(s) 66, 1059
Cac8I GCNNGC 3 cut(s) 747, 933, 1092
CciI TCATGA 1 cut(s) 657
CfoI GCGC 1 cut(s) 931
CseI GACGC 1 cut(s) 138
Csp6I GTAC 5 cut(s) 546, 740, 877, 1081, 1099
CviAII CATG 3 cut(s) 444, 658, 746
CviQI GTAC 5 cut(s) 546, 740, 877, 1081, 1099
DdeI CTNAG 3 cut(s) 147, 797, 1106
DpnI GATC 6 cut(s) 76, 366, 408, 669, 974, 1031
DpnII GATC 6 cut(s) 74, 364, 406, 667, 972, 1029
Eam1104I CTCTTC 2 cut(s) 20, 306
EarI CTCTTC 2 cut(s) 20, 306
EciI GGCGGA 1 cut(s) 141
Eco31I GGTCTC 1 cut(s) 884
Eco57I CTGAAG 1 cut(s) 816
Eco81I CCTNAGG 1 cut(s) 1106
Eco91I GGTNACC 2 cut(s) 11, 716
EcoO65I GGTNACC 2 cut(s) 11, 716
EcoRI GAATTC 1 cut(s) 134
EcoRII CCWGG 2 cut(s) 91, 217
Esp3I CGTCTC 1 cut(s) 643
FaeI CATG 3 cut(s) 447, 661, 749
FaiI YATR 8 cut(s) 264, 445, 659, 747, 752, 780, 782, 924
FaqI GGGAC 2 cut(s) 211, 711
FatI CATG 3 cut(s) 443, 657, 745
FauNDI CATATG 1 cut(s) 780
FbaI TGATCA 1 cut(s) 406
FblI GTMKAC 1 cut(s) 1121
Fnu4HI GCNGC 5 cut(s) 144, 762, 765, 863, 1112
FokI GGATG 5 cut(s) 284, 290, 680, 779, 967
Fsp4HI GCNGC 5 cut(s) 144, 762, 765, 863, 1112
FspBI CTAG 4 cut(s) 368, 390, 531, 1091
GlaI GCGC 1 cut(s) 930
GluI GCNGC 5 cut(s) 144, 762, 765, 863, 1112
HapII CCGG 4 cut(s) 9, 671, 904, 1019
HgaI GACGC 1 cut(s) 138
HhaI GCGC 1 cut(s) 931
Hin1II CATG 3 cut(s) 447, 661, 749
Hin6I GCGC 1 cut(s) 929
HinP1I GCGC 1 cut(s) 929
HincII GTYRAC 1 cut(s) 1122
HindII GTYRAC 1 cut(s) 1122
HinfI GANTC 4 cut(s) 170, 203, 214, 502
HpaII CCGG 4 cut(s) 9, 671, 904, 1019
HphI GGTGA 2 cut(s) 23, 728
Hpy166II GTNNAC 3 cut(s) 546, 577, 1122
Hpy188I TCNGA 2 cut(s) 507, 835
Hpy188III TCNNGA 4 cut(s) 149, 658, 849, 1019
Hpy8I GTNNAC 3 cut(s) 546, 577, 1122
Hpy99I CGWCG 1 cut(s) 1123
HpyAV CCTTC 5 cut(s) 64, 347, 389, 431, 840
HpyCH4III ACNGT 5 cut(s) 478, 654, 683, 876, 1054
HpyCH4IV ACGT 3 cut(s) 162, 542, 1118
HpyCH4V TGCA 3 cut(s) 587, 678, 767
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 3 cut(s) 147, 797, 1106
HpySE526I ACGT 3 cut(s) 162, 542, 1118
Hsp92II CATG 3 cut(s) 447, 661, 749
HspAI GCGC 1 cut(s) 929
Kpn2I TCCGGA 1 cut(s) 1018
Ksp22I TGATCA 1 cut(s) 406
Kzo9I GATC 6 cut(s) 74, 364, 406, 667, 972, 1029
LmnI GCTCC 3 cut(s) 184, 926, 1087
Lsp1109I GCAGC 4 cut(s) 130, 748, 751, 1123
MaeI CTAG 4 cut(s) 368, 390, 531, 1091
MaeII ACGT 3 cut(s) 162, 542, 1118
MaeIII GTNAC 4 cut(s) 11, 250, 716, 824
MalI GATC 6 cut(s) 76, 366, 408, 669, 974, 1031
MboI GATC 6 cut(s) 74, 364, 406, 667, 972, 1029
MfeI CAATTG 3 cut(s) 458, 810, 1126
MflI RGATCY 2 cut(s) 74, 667
MluCI AATT 9 cut(s) 134, 458, 735, 810, 843, 908, 1041, 1062, 1126
MlyI GAGTC 1 cut(s) 197
MroI TCCGGA 1 cut(s) 1018
MseI TTAA 4 cut(s) 159, 402, 1047, 1061
MslI CAYNNNNRTG 1 cut(s) 698
MspI CCGG 4 cut(s) 9, 671, 904, 1019
MspR9I CCNGG 4 cut(s) 93, 219, 672, 904
MunI CAATTG 3 cut(s) 458, 810, 1126
MvaI CCWGG 2 cut(s) 93, 219
MvnI CGCG 2 cut(s) 132, 931
MwoI GCNNNNNNNGC 1 cut(s) 152
NciI CCSGG 2 cut(s) 672, 904
NdeI CATATG 1 cut(s) 780
NdeII GATC 6 cut(s) 74, 364, 406, 667, 972, 1029
NheI GCTAGC 1 cut(s) 1090
NlaIII CATG 3 cut(s) 447, 661, 749
NmuCI GTSAC 2 cut(s) 11, 716
NspI RCATGY 1 cut(s) 749
PaeI GCATGC 1 cut(s) 749
PagI TCATGA 1 cut(s) 657
PfeI GAWTC 3 cut(s) 170, 214, 502
PkrI GCNGC 5 cut(s) 145, 763, 766, 864, 1113
Ple19I CGATCG 2 cut(s) 975, 1032
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PshAI GACNNNNGTC 1 cut(s) 723
Psp6I CCWGG 2 cut(s) 91, 217
PspEI GGTNACC 2 cut(s) 11, 716
PspGI CCWGG 2 cut(s) 91, 217
PsuI RGATCY 2 cut(s) 74, 667
PvuI CGATCG 2 cut(s) 975, 1032
RsaI GTAC 5 cut(s) 547, 741, 878, 1082, 1100
RsaNI GTAC 5 cut(s) 546, 740, 877, 1081, 1099
RseI CAYNNNNRTG 1 cut(s) 698
SalI GTCGAC 1 cut(s) 1120
SaqAI TTAA 4 cut(s) 159, 402, 1047, 1061
SatI GCNGC 5 cut(s) 144, 762, 765, 863, 1112
Sau3AI GATC 6 cut(s) 74, 364, 406, 667, 972, 1029
ScaI AGTACT 1 cut(s) 878
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 4 cut(s) 93, 219, 672, 904
SmiMI CAYNNNNRTG 1 cut(s) 698
SphI GCATGC 1 cut(s) 749
Sse9I AATT 9 cut(s) 134, 458, 735, 810, 843, 908, 1041, 1062, 1126
SsiI CCGC 3 cut(s) 126, 357, 863
SspMI CTAG 4 cut(s) 368, 390, 531, 1091
StyD4I CCNGG 4 cut(s) 91, 217, 670, 902
TaaI ACNGT 5 cut(s) 478, 654, 683, 876, 1054
TaiI ACGT 3 cut(s) 165, 545, 1121
TaqI TCGA 3 cut(s) 180, 206, 1121
TaqII GACCGA 1 cut(s) 908
TasI AATT 9 cut(s) 134, 458, 735, 810, 843, 908, 1041, 1062, 1126
TatI WGTACW 4 cut(s) 739, 876, 1080, 1098
TauI GCSGC 1 cut(s) 865
TfiI GAWTC 3 cut(s) 170, 214, 502
Tru1I TTAA 4 cut(s) 159, 402, 1047, 1061
Tru9I TTAA 4 cut(s) 159, 402, 1047, 1061
TscAI CASTG 2 cut(s) 66, 1059
TseFI GTSAC 2 cut(s) 11, 716
TseI GCWGC 4 cut(s) 143, 761, 764, 1111
Tsp45I GTSAC 2 cut(s) 11, 716
TspDTI ATGAA 8 cut(s) 100, 537, 646, 674, 682, 716, 781, 971
TspGWI ACGGA 1 cut(s) 563
TspRI CASTG 2 cut(s) 66, 1059
XapI RAATTY 3 cut(s) 134, 843, 908
XceI RCATGY 1 cut(s) 749
XmiI GTMKAC 1 cut(s) 1121
XspI CTAG 4 cut(s) 368, 390, 531, 1091
ZrmI AGTACT 1 cut(s) 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.