Rorug05G0266700

THUMP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0012337
Physical Location & Seq
Reverse (-)
30079620 .. 30080390
771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0266700.1

Sequence Viewer

Length: 771 bp
ATGGAGAAAATCTCAGGTTTCGGCCTCCTCACCTTCGTCTTCGTTGTCTTCGGAGGTAGTTCTTGTGAAAAGAGTTTGGGTGCGGCTGAGGCCGTGTTGGTGGGCCAACGAACTGCTGGTACTGCATCGGTGGTTGGCGGTGCTTACGGGGTGGAGTGGGATCCGGGTAGGAGCCATGGTGATCTTAGTGGGTCGCCTCTTTCCGGCGGTGCTGCTGAAGCGGTGGTGATTCGGTGGGTGCGAAAGGGAGCTTTCTTCTGGTTGGATGGCATGCCGTTGTCGGTGCCGGGTCCGACTAGTGGAGCTATTGGAGTTGACGACTGTTGGGATGGCGATCGGGTTTGCTTTCTGGCGTTTGTCGCGGACGGTGGAGACTGGATTGGCTCCCAATCTGGGAGTCTGAGGACGTCCGGTGGTGTGGGGTGGCTGGGATCGTTCAAGTCTGGTGTGATGGCGGCGGCCGTTACAAGATCGGCGCTCTCTGTGGGTTGGTGGTGGCTTCGAGTCCTAGATCTGGAGAGGACGACCGGCGCCGCTGCTGACGGAGATGGTGCACTCCGACGGTGGCGTAGCTCAGCTTGCCGGAGTCGAGCTGGTGGGTTGGGTGTCCTGAGCACTTGTTCAGGGGATTGGAATTGGGCCTATTATCTGGTGTCATGGCCTGCATTAGGGCTTTTTGGCTCTAGGTCCTGGGCTTGGAGGGCCTGCTGGGCTTATTTAATTTTAAAAGGGATGGAAGGTGATTTATCATCTTCCATTCCTAGCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
THUMP

Protein Analysis

256

Amino Acids

26.83

Weight (kDa)

6.57

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12410
fragaria_vesca FvH4_3g28330 FvH4_3g28330
malus_domestica MD03G1170300.v1.1 MD11G1187800.v1.1
prunus_persica Prupe.4G256800_v2.0.a1
pyrus_communis pycom03g12680 pycom11g16450
rosa_chinensis RchiOBHm_Chr5g0051211
rosa_laevigata RLG00000034763
rosa_multiflora Rmu_sc0002385.1_g000021 Rmu_sc0042180.1_g000001
rosa_roxburghii Rroxscaffold_1G00029150
rosa_rugosa Rorug05G0266700
rosa_samantha Rh5AG339000 Rh5BG348900 Rh5CG375900 Rh5DG361800
rosa_wichuraiana Rw5G032030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 410
AccB1I GGYRCC 2 cut(s) 283, 530
AccII CGCG 1 cut(s) 362
AciI CCGC 8 cut(s) 83, 138, 207, 221, 362, 455, 458, 534
AclWI GGATC 3 cut(s) 155, 168, 439
AcoI YGGCCR 1 cut(s) 459
AcuI CTGAAG 1 cut(s) 237
AcyI GRCGYC 2 cut(s) 407, 531
AfaI GTAC 1 cut(s) 121
AfiI CCNNNNNNNGG 6 cut(s) 203, 299, 393, 514, 668, 696
AgsI TTSAA 1 cut(s) 439
AhlI ACTAGT 1 cut(s) 296
AjnI CCWGG 1 cut(s) 689
AluBI AGCT 6 cut(s) 251, 305, 573, 578, 593, 765
AluI AGCT 6 cut(s) 251, 305, 573, 578, 593, 765
Alw21I GWGCWC 2 cut(s) 556, 617
Alw26I GTCTC 1 cut(s) 366
Alw44I GTGCAC 1 cut(s) 552
AlwI GGATC 3 cut(s) 155, 168, 439
AoxI GGCC 7 cut(s) 22, 90, 103, 459, 639, 659, 702
ApaLI GTGCAC 1 cut(s) 552
ApeKI GCWGC 2 cut(s) 212, 536
AspLEI GCGC 2 cut(s) 478, 533
AspS9I GGNCC 5 cut(s) 103, 290, 639, 687, 702
AsuC2I CCSGG 2 cut(s) 165, 288
AsuHPI GGTGA 4 cut(s) 22, 191, 238, 752
AvaII GGWCC 2 cut(s) 290, 687
BaeGI GKGCMC 1 cut(s) 556
BamHI GGATCC 1 cut(s) 160
BanI GGYRCC 2 cut(s) 283, 530
BbsI GAAGAC 2 cut(s) 31, 40
Bbv12I GWGCWC 2 cut(s) 556, 617
BbvCI CCTCAGC 1 cut(s) 87
BbvI GCAGC 2 cut(s) 199, 523
BccI CCATC 5 cut(s) 260, 323, 445, 542, 727
BceAI ACGGC 3 cut(s) 77, 259, 446
BciT130I CCWGG 1 cut(s) 691
BcnI CCSGG 2 cut(s) 165, 288
BcoDI GTCTC 1 cut(s) 366
BcuI ACTAGT 1 cut(s) 296
BfaI CTAG 4 cut(s) 297, 509, 684, 762
BfoI RGCGCY 2 cut(s) 479, 534
BglI GCCNNNNNGGC 1 cut(s) 710
BglII AGATCT 1 cut(s) 511
BisI GCNGC 6 cut(s) 84, 213, 456, 459, 534, 537
BlpI GCTNAGC 1 cut(s) 574
BlsI GCNGC 6 cut(s) 85, 214, 457, 460, 535, 538
Bme1390I CCNGG 3 cut(s) 165, 288, 691
Bme18I GGWCC 2 cut(s) 290, 687
BmgT120I GGNCC 5 cut(s) 103, 290, 639, 687, 702
BmiI GGNNCC 6 cut(s) 162, 173, 285, 291, 385, 532
BmrFI CCNGG 3 cut(s) 165, 288, 691
BmsI GCATC 1 cut(s) 134
BpiI GAAGAC 2 cut(s) 31, 40
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 536
Bpu10I CCTNAGC 2 cut(s) 87, 611
Bpu1102I GCTNAGC 1 cut(s) 574
BpuMI CCSGG 2 cut(s) 165, 288
BsaBI GATNNNNATC 1 cut(s) 333
BsaHI GRCGYC 2 cut(s) 407, 531
BsaJI CCNNGG 2 cut(s) 175, 690
BsaWI WCCGGW 1 cut(s) 410
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 6 cut(s) 203, 299, 393, 514, 668, 696
Bse118I RCCGGY 1 cut(s) 527
Bse1I ACTGG 1 cut(s) 380
Bse8I GATNNNNATC 1 cut(s) 333
BseBI CCWGG 1 cut(s) 691
BseDI CCNNGG 2 cut(s) 175, 690
BseGI GGATG 3 cut(s) 271, 334, 738
BseJI GATNNNNATC 1 cut(s) 333
BseLI CCNNNNNNNGG 6 cut(s) 203, 299, 393, 514, 668, 696
BseMII CTCAG 5 cut(s) 27, 78, 392, 588, 602
BseNI ACTGG 1 cut(s) 380
BseRI GAGGAG 1 cut(s) 17
BseSI GKGCMC 1 cut(s) 556
BseX3I CGGCCG 1 cut(s) 459
BseXI GCAGC 2 cut(s) 199, 523
BseYI CCCAGC 2 cut(s) 427, 708
Bsh1236I CGCG 1 cut(s) 362
Bsh1285I CGRYCG 3 cut(s) 337, 462, 528
BshFI GGCC 7 cut(s) 24, 92, 105, 461, 641, 661, 704
BshNI GGYRCC 2 cut(s) 283, 530
BsiEI CGRYCG 3 cut(s) 337, 462, 528
BsiHKAI GWGCWC 2 cut(s) 556, 617
BsiSI CCGG 6 cut(s) 164, 204, 287, 411, 528, 583
BslI CCNNNNNNNGG 6 cut(s) 203, 299, 393, 514, 668, 696
BsmAI GTCTC 1 cut(s) 366
BsnI GGCC 7 cut(s) 24, 92, 105, 461, 641, 661, 704
Bsp1286I GDGCHC 2 cut(s) 556, 617
Bsp143I GATC 6 cut(s) 160, 181, 334, 431, 470, 511
Bsp1720I GCTNAGC 1 cut(s) 574
Bsp19I CCATGG 1 cut(s) 175
BspACI CCGC 8 cut(s) 83, 138, 207, 221, 362, 455, 458, 534
BspANI GGCC 7 cut(s) 24, 92, 105, 461, 641, 661, 704
BspCNI CTCAG 5 cut(s) 26, 79, 393, 587, 603
BspFNI CGCG 1 cut(s) 362
BspLI GGNNCC 6 cut(s) 162, 173, 285, 291, 385, 532
BspPI GGATC 3 cut(s) 155, 168, 439
BspT107I GGYRCC 2 cut(s) 283, 530
BsrFI RCCGGY 1 cut(s) 527
BsrI ACTGG 1 cut(s) 380
BssAI RCCGGY 1 cut(s) 527
BssECI CCNNGG 2 cut(s) 175, 690
BssMI GATC 6 cut(s) 160, 181, 334, 431, 470, 511
BssNI GRCGYC 2 cut(s) 407, 531
BssT1I CCWWGG 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 691
Bst4CI ACNGT 3 cut(s) 323, 368, 564
BstACI GRCGYC 2 cut(s) 407, 531
BstC8I GCNNGC 4 cut(s) 272, 580, 663, 706
BstDEI CTNAG 6 cut(s) 13, 87, 185, 401, 574, 611
BstDSI CCRYGG 1 cut(s) 175
BstENI CCTNNNNNAGG 1 cut(s) 666
BstF5I GGATG 3 cut(s) 271, 334, 738
BstFNI CGCG 1 cut(s) 362
BstH2I RGCGCY 2 cut(s) 479, 534
BstHHI GCGC 2 cut(s) 478, 533
BstKTI GATC 6 cut(s) 163, 184, 337, 434, 473, 514
BstMAI GTCTC 1 cut(s) 366
BstMBI GATC 6 cut(s) 160, 181, 334, 431, 470, 511
BstMCI CGRYCG 3 cut(s) 337, 462, 528
BstMWI GCNNNNNNNGC 7 cut(s) 89, 122, 218, 359, 579, 701, 710
BstNI CCWGG 1 cut(s) 691
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 3 cut(s) 163, 286, 689
BstSLI GKGCMC 1 cut(s) 556
BstUI CGCG 1 cut(s) 362
BstV1I GCAGC 2 cut(s) 199, 523
BstV2I GAAGAC 2 cut(s) 31, 40
BstX2I RGATCY 2 cut(s) 160, 511
BstYI RGATCY 2 cut(s) 160, 511
BstZI CGGCCG 1 cut(s) 459
BsuRI GGCC 7 cut(s) 24, 92, 105, 461, 641, 661, 704
BtgI CCRYGG 1 cut(s) 175
BtsCI GGATG 3 cut(s) 271, 334, 738
Cac8I GCNNGC 4 cut(s) 272, 580, 663, 706
CfoI GCGC 2 cut(s) 478, 533
Cfr10I RCCGGY 1 cut(s) 527
Cfr13I GGNCC 5 cut(s) 103, 290, 639, 687, 702
Csp6I GTAC 1 cut(s) 120
CviAII CATG 3 cut(s) 176, 271, 657
CviQI GTAC 1 cut(s) 120
DdeI CTNAG 6 cut(s) 13, 87, 185, 401, 574, 611
DinI GGCGCC 1 cut(s) 532
DpnI GATC 6 cut(s) 162, 183, 336, 433, 472, 513
DpnII GATC 6 cut(s) 160, 181, 334, 431, 470, 511
DraI TTTAAA 1 cut(s) 726
EaeI YGGCCR 1 cut(s) 459
EagI CGGCCG 1 cut(s) 459
EclXI CGGCCG 1 cut(s) 459
Eco130I CCWWGG 1 cut(s) 175
Eco47I GGWCC 2 cut(s) 290, 687
Eco52I CGGCCG 1 cut(s) 459
Eco57I CTGAAG 1 cut(s) 237
EcoNI CCTNNNNNAGG 1 cut(s) 666
EcoO109I RGGNCCY 2 cut(s) 687, 702
EcoRII CCWGG 1 cut(s) 689
EcoT14I CCWWGG 1 cut(s) 175
EgeI GGCGCC 1 cut(s) 532
EheI GGCGCC 1 cut(s) 532
ErhI CCWWGG 1 cut(s) 175
FaeI CATG 3 cut(s) 179, 274, 660
FaiI YATR 3 cut(s) 177, 272, 658
FatI CATG 3 cut(s) 175, 270, 656
Fnu4HI GCNGC 6 cut(s) 84, 213, 456, 459, 534, 537
FokI GGATG 3 cut(s) 278, 341, 745
Fsp4HI GCNGC 6 cut(s) 84, 213, 456, 459, 534, 537
FspBI CTAG 4 cut(s) 297, 509, 684, 762
GlaI GCGC 2 cut(s) 477, 532
GluI GCNGC 6 cut(s) 84, 213, 456, 459, 534, 537
GsaI CCCAGC 2 cut(s) 431, 712
GsuI CTGGAG 1 cut(s) 536
HaeII RGCGCY 2 cut(s) 479, 534
HaeIII GGCC 7 cut(s) 24, 92, 105, 461, 641, 661, 704
HapII CCGG 6 cut(s) 164, 204, 287, 411, 528, 583
HhaI GCGC 2 cut(s) 478, 533
Hin1I GRCGYC 2 cut(s) 407, 531
Hin1II CATG 3 cut(s) 179, 274, 660
Hin6I GCGC 2 cut(s) 476, 531
HinP1I GCGC 2 cut(s) 476, 531
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 4 cut(s) 229, 397, 504, 586
HpaII CCGG 6 cut(s) 164, 204, 287, 411, 528, 583
HphI GGTGA 4 cut(s) 22, 191, 238, 752
Hpy166II GTNNAC 2 cut(s) 316, 554
Hpy188I TCNGA 4 cut(s) 53, 294, 402, 560
Hpy188III TCNNGA 2 cut(s) 515, 610
Hpy8I GTNNAC 2 cut(s) 316, 554
Hpy99I CGWCG 1 cut(s) 564
HpyAV CCTTC 2 cut(s) 43, 731
HpyCH4III ACNGT 3 cut(s) 323, 368, 564
HpyCH4IV ACGT 1 cut(s) 407
HpyCH4V TGCA 3 cut(s) 125, 554, 665
HpyF10VI GCNNNNNNNGC 7 cut(s) 89, 122, 218, 359, 579, 701, 710
HpyF3I CTNAG 6 cut(s) 13, 87, 185, 401, 574, 611
HpySE526I ACGT 1 cut(s) 407
Hsp92I GRCGYC 2 cut(s) 407, 531
Hsp92II CATG 3 cut(s) 179, 274, 660
HspAI GCGC 2 cut(s) 476, 531
KasI GGCGCC 1 cut(s) 530
Kzo9I GATC 6 cut(s) 160, 181, 334, 431, 470, 511
LmnI GCTCC 4 cut(s) 171, 248, 302, 389
Lsp1109I GCAGC 2 cut(s) 199, 523
LweI GCATC 1 cut(s) 134
MaeI CTAG 4 cut(s) 297, 509, 684, 762
MaeII ACGT 1 cut(s) 407
MaeIII GTNAC 1 cut(s) 463
MalI GATC 6 cut(s) 162, 183, 336, 433, 472, 513
MboI GATC 6 cut(s) 160, 181, 334, 431, 470, 511
MboII GAAGA 4 cut(s) 31, 40, 247, 744
MflI RGATCY 2 cut(s) 160, 511
MhlI GDGCHC 2 cut(s) 556, 617
MluCI AATT 2 cut(s) 634, 720
Mly113I GGCGCC 1 cut(s) 531
MlyI GAGTC 3 cut(s) 406, 513, 595
MmeI TCCRAC 3 cut(s) 243, 317, 583
MnlI CCTC 8 cut(s) 35, 38, 47, 82, 207, 396, 513, 693
MseI TTAA 2 cut(s) 719, 725
MspA1I CMGCKG 1 cut(s) 536
MspI CCGG 6 cut(s) 164, 204, 287, 411, 528, 583
MspR9I CCNGG 3 cut(s) 165, 288, 691
MvaI CCWGG 1 cut(s) 691
MvnI CGCG 1 cut(s) 362
MwoI GCNNNNNNNGC 7 cut(s) 89, 122, 218, 359, 579, 701, 710
NarI GGCGCC 1 cut(s) 531
NciI CCSGG 2 cut(s) 165, 288
NcoI CCATGG 1 cut(s) 175
NdeII GATC 6 cut(s) 160, 181, 334, 431, 470, 511
NlaIII CATG 3 cut(s) 179, 274, 660
NlaIV GGNNCC 6 cut(s) 162, 173, 285, 291, 385, 532
NspI RCATGY 1 cut(s) 274
PaeI GCATGC 1 cut(s) 274
PcsI WCGNNNNNNNCGW 1 cut(s) 238
PfeI GAWTC 1 cut(s) 229
PkrI GCNGC 6 cut(s) 85, 214, 457, 460, 535, 538
Ple19I CGATCG 1 cut(s) 337
PleI GAGTC 3 cut(s) 405, 512, 594
PluTI GGCGCC 1 cut(s) 534
PpsI GAGTC 3 cut(s) 405, 512, 594
PpuMI RGGWCCY 1 cut(s) 687
Psp5II RGGWCCY 1 cut(s) 687
Psp6I CCWGG 1 cut(s) 689
PspFI CCCAGC 2 cut(s) 427, 708
PspGI CCWGG 1 cut(s) 689
PspN4I GGNNCC 6 cut(s) 162, 173, 285, 291, 385, 532
PspPI GGNCC 5 cut(s) 103, 290, 639, 687, 702
PspPPI RGGWCCY 1 cut(s) 687
PsrI GAACNNNNNNTAC 2 cut(s) 103, 135
PsuI RGATCY 2 cut(s) 160, 511
PvuI CGATCG 1 cut(s) 337
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
SaqAI TTAA 2 cut(s) 719, 725
SatI GCNGC 6 cut(s) 84, 213, 456, 459, 534, 537
Sau3AI GATC 6 cut(s) 160, 181, 334, 431, 470, 511
Sau96I GGNCC 5 cut(s) 103, 290, 639, 687, 702
SchI GAGTC 3 cut(s) 406, 513, 595
ScrFI CCNGG 3 cut(s) 165, 288, 691
SduI GDGCHC 2 cut(s) 556, 617
SfaNI GCATC 1 cut(s) 134
SfoI GGCGCC 1 cut(s) 532
SinI GGWCC 2 cut(s) 290, 687
SpeI ACTAGT 1 cut(s) 296
SphI GCATGC 1 cut(s) 274
Sse9I AATT 2 cut(s) 634, 720
SsiI CCGC 8 cut(s) 83, 138, 207, 221, 362, 455, 458, 534
SspDI GGCGCC 1 cut(s) 530
SspMI CTAG 4 cut(s) 297, 509, 684, 762
StyD4I CCNGG 3 cut(s) 163, 286, 689
StyI CCWWGG 1 cut(s) 175
TaaI ACNGT 3 cut(s) 323, 368, 564
TaiI ACGT 1 cut(s) 410
TaqI TCGA 2 cut(s) 502, 589
TasI AATT 2 cut(s) 634, 720
TauI GCSGC 4 cut(s) 86, 458, 461, 536
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 2 cut(s) 719, 725
Tru9I TTAA 2 cut(s) 719, 725
TseI GCWGC 2 cut(s) 212, 536
TspGWI ACGGA 1 cut(s) 558
VneI GTGCAC 1 cut(s) 552
VpaK11BI GGWCC 2 cut(s) 290, 687
XagI CCTNNNNNAGG 1 cut(s) 666
XceI RCATGY 1 cut(s) 274
XcmI CCANNNNNNNNNTGG 1 cut(s) 113
XspI CTAG 4 cut(s) 297, 509, 684, 762
ZraI GACGTC 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.