MD11G1187800.v1.1

THUMP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0012337
Physical Location & Seq
Reverse (-)
26413813 .. 26417867
4055 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1187800.v1.1.491

Sequence Viewer

Length: 1161 bp
ATGGCGACGGACAACAAACCCACCAAGTCCAAGAAGGGGAAGCAGCGCTATCTCCCTCACAACAAAGCGGTGAAGAAGAAAGGGGCGTACCCATTACACCCAGGAGTGGAAGGATTCTTCATCACTTGCGATGGCGGAAGGGAACGCCAAGCCTCTCAGGAAGCCATTAACGTTATTGACTCTTTTTATGAAGAGCTAGTCAGTGGAAAGGGTTCGGGATTGAAGCTTTCTGAGGCACCCTGTAAACCTTCAAATAAGAAAATAGTGTTCTCGTATTCTGATTCTTCCAGTGGTGAGGGTGATGACAATGATGATGATGAAAAGAAACAAGAAGGAGAGGACAAGGAAGCAGAAGAAGAGAGCGAAGTGGGTGAAGAGAGTAAAGGTGATTCTCGTAGTGATGATGCCAGTCATGATAATGCAACAAGTGAGAAATCAGAACACCAGAAGAAGGATGATGCATGTGACAAAAATAAAACTGAGGAAAACACTGAAGACAAGAAAGAGGATAATATATGTAGGGAAATTTGTGCAAATGAAGCTGAGGAGCCACCAGCAAAGAAACAATGTCTAGGAACAGATTCATCAAAATTTACAATCCCATACAAAGTGGAAGAGAAGTCCATCGATAAGCTAATTGAAGCTGAGCTTCAAGAACTGGGAGATAAGAACAAGAGACGCTTTTTCACCCTTGAATCGGGTTGCAACGGTGTCGTCTTTGTTCAAATGCGGAAAAGAGAGGGAGATCCTAGCCCTAGCGCAATTGTGCAGCATATGATAACATCTGCTGCTGCAACAAAGAAACACATGTCAAGGTTTATCTTAAGAGTATTACCCGTTGAAGTAGCATGCTATTCTTCAGAAGAGGAAATTTCAAGAGCAATCAAACCACTTCTTGAACAGCACTTTCCAGTGGAAACTCCGAATCCTCAGAAGTTTGCTGTCCTGTATGAAGCCCGTGCAAATACCGGTATAGACAGGATGAAAATCATAAATGCAGTGGCAAAATCTGTGCCTGCACCTCACAAAGTTGACCTCAACAATCCCGATAAGACCATTGTTGTTGAAATTTGCAGGACTATTTGCATGATCGGTGTTGTTGACAAGTACAAGCAGTTAGCAAAGTACAATTTGAGGCAGCTCACATCATCGAAGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
THUMP

Protein Analysis

387

Amino Acids

43.02

Weight (kDa)

5.8

Isoelectric Point (pI)

55.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
THUMP PF02926 285 - 367 4.9e-16 THUMP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12410
fragaria_vesca FvH4_3g28330 FvH4_3g28330
malus_domestica MD03G1170300.v1.1 MD11G1187800.v1.1
prunus_persica Prupe.4G256800_v2.0.a1
pyrus_communis pycom03g12680 pycom11g16450
rosa_chinensis RchiOBHm_Chr5g0051211
rosa_laevigata RLG00000034763
rosa_multiflora Rmu_sc0002385.1_g000021 Rmu_sc0042180.1_g000001
rosa_roxburghii Rroxscaffold_1G00029150
rosa_rugosa Rorug05G0266700
rosa_samantha Rh5AG339000 Rh5BG348900 Rh5CG375900 Rh5DG361800
rosa_wichuraiana Rw5G032030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 235
AciI CCGC 3 cut(s) 68, 135, 730
AclI AACGTT 1 cut(s) 171
AclWI GGATC 1 cut(s) 740
AcsI RAATTY 4 cut(s) 525, 590, 870, 1068
AcuI CTGAAG 2 cut(s) 513, 843
AfaI GTAC 3 cut(s) 89, 1109, 1127
AfeI AGCGCT 1 cut(s) 47
AfiI CCNNNNNNNGG 4 cut(s) 36, 106, 451, 697
AflII CTTAAG 1 cut(s) 823
AflIII ACRYGT 1 cut(s) 807
AgeI ACCGGT 1 cut(s) 968
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 7 cut(s) 196, 226, 542, 634, 644, 649, 1141
AluI AGCT 7 cut(s) 196, 226, 542, 634, 644, 649, 1141
Alw26I GTCTC 1 cut(s) 670
AlwI GGATC 1 cut(s) 740
Aor51HI AGCGCT 1 cut(s) 47
ApeKI GCWGC 5 cut(s) 43, 769, 788, 791, 1138
ApoI RAATTY 4 cut(s) 525, 590, 870, 1068
AsiGI ACCGGT 1 cut(s) 968
Asp700I GAANNNNTTC 2 cut(s) 211, 580
AspLEI GCGC 2 cut(s) 48, 761
AsuHPI GGTGA 6 cut(s) 82, 305, 311, 383, 398, 679
BanI GGYRCC 1 cut(s) 235
BbsI GAAGAC 1 cut(s) 501
BbvCI CCTCAGC 1 cut(s) 543
BbvI GCAGC 5 cut(s) 55, 775, 778, 781, 1150
BccI CCATC 2 cut(s) 125, 632
BcgI CGANNNNNNTGC 2 cut(s) 694, 728
BciT130I CCWGG 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 670
BfaI CTAG 4 cut(s) 197, 572, 750, 756
BfoI RGCGCY 1 cut(s) 49
BfrI CTTAAG 1 cut(s) 823
BisI GCNGC 5 cut(s) 44, 770, 789, 792, 1139
BlpI GCTNAGC 1 cut(s) 645
BlsI GCNGC 5 cut(s) 45, 771, 790, 793, 1140
Bme1390I CCNGG 1 cut(s) 102
BmiI GGNNCC 2 cut(s) 237, 549
BmrFI CCNGG 1 cut(s) 102
BmrI ACTGGG 1 cut(s) 668
BmsI GCATC 2 cut(s) 394, 448
BmuI ACTGGG 1 cut(s) 668
BpiI GAAGAC 1 cut(s) 501
Bpu10I CCTNAGC 1 cut(s) 543
Bpu1102I GCTNAGC 1 cut(s) 645
Bsa29I ATCGAT 1 cut(s) 627
BsaBI GATNNNNATC 1 cut(s) 986
BsaJI CCNNGG 1 cut(s) 100
BsaWI WCCGGW 1 cut(s) 968
Bsc4I CCNNNNNNNGG 4 cut(s) 36, 106, 451, 697
Bse118I RCCGGY 1 cut(s) 968
Bse1I ACTGG 4 cut(s) 288, 408, 663, 911
Bse8I GATNNNNATC 1 cut(s) 986
BseBI CCWGG 1 cut(s) 102
BseCI ATCGAT 1 cut(s) 627
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 2 cut(s) 460, 987
BseJI GATNNNNATC 1 cut(s) 986
BseLI CCNNNNNNNGG 4 cut(s) 36, 106, 451, 697
BseMII CTCAG 6 cut(s) 170, 222, 471, 534, 636, 944
BseNI ACTGG 4 cut(s) 288, 408, 663, 911
BseRI GAGGAG 1 cut(s) 560
BseXI GCAGC 5 cut(s) 55, 775, 778, 781, 1150
BsgI GTGCAG 2 cut(s) 788, 1002
BshNI GGYRCC 1 cut(s) 235
BshTI ACCGGT 1 cut(s) 968
BshVI ATCGAT 1 cut(s) 627
BsiSI CCGG 1 cut(s) 969
BslI CCNNNNNNNGG 4 cut(s) 36, 106, 451, 697
BsmAI GTCTC 1 cut(s) 670
BsmBI CGTCTC 1 cut(s) 670
Bsp143I GATC 2 cut(s) 745, 1089
Bsp1720I GCTNAGC 1 cut(s) 645
BspACI CCGC 3 cut(s) 68, 135, 730
BspCNI CTCAG 6 cut(s) 169, 223, 472, 535, 637, 943
BspDI ATCGAT 1 cut(s) 627
BspHI TCATGA 1 cut(s) 412
BspLI GGNNCC 2 cut(s) 237, 549
BspPI GGATC 1 cut(s) 740
BspQI GCTCTTC 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 235
BspTI CTTAAG 1 cut(s) 823
BsrFI RCCGGY 1 cut(s) 968
BsrI ACTGG 4 cut(s) 288, 408, 663, 911
BssAI RCCGGY 1 cut(s) 968
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 2 cut(s) 745, 1089
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 710
Bst6I CTCTTC 5 cut(s) 186, 351, 369, 609, 858
BstAFI CTTAAG 1 cut(s) 823
BstC8I GCNNGC 2 cut(s) 850, 1017
BstDEI CTNAG 6 cut(s) 156, 231, 480, 543, 645, 930
BstF5I GGATG 2 cut(s) 460, 987
BstH2I RGCGCY 1 cut(s) 49
BstHHI GCGC 2 cut(s) 48, 761
BstKTI GATC 2 cut(s) 748, 1092
BstMAI GTCTC 1 cut(s) 670
BstMBI GATC 2 cut(s) 745, 1089
BstMWI GCNNNNNNNGC 1 cut(s) 539
BstNI CCWGG 1 cut(s) 102
BstNSI RCATGY 3 cut(s) 465, 811, 852
BstSCI CCNGG 1 cut(s) 100
BstV1I GCAGC 5 cut(s) 55, 775, 778, 781, 1150
BstV2I GAAGAC 1 cut(s) 501
BstX2I RGATCY 1 cut(s) 745
BstYI RGATCY 1 cut(s) 745
Bsu15I ATCGAT 1 cut(s) 627
BsuTUI ATCGAT 1 cut(s) 627
BtgZI GCGATG 1 cut(s) 144
BtsCI GGATG 2 cut(s) 460, 987
BtsI GCAGTG 1 cut(s) 1005
BtsIMutI CAGTG 5 cut(s) 208, 295, 489, 918, 1005
Cac8I GCNNGC 2 cut(s) 850, 1017
CciI TCATGA 1 cut(s) 412
CfoI GCGC 2 cut(s) 48, 761
Cfr10I RCCGGY 1 cut(s) 968
ClaI ATCGAT 1 cut(s) 627
CseI GACGC 1 cut(s) 687
Csp6I GTAC 3 cut(s) 88, 1108, 1126
CspAI ACCGGT 1 cut(s) 968
CviAII CATG 5 cut(s) 413, 462, 808, 849, 1087
CviQI GTAC 3 cut(s) 88, 1108, 1126
DdeI CTNAG 6 cut(s) 156, 231, 480, 543, 645, 930
DpnI GATC 2 cut(s) 747, 1091
DpnII GATC 2 cut(s) 745, 1089
Eam1104I CTCTTC 5 cut(s) 186, 351, 369, 609, 858
EarI CTCTTC 5 cut(s) 186, 351, 369, 609, 858
EciI GGCGGA 1 cut(s) 150
Eco47III AGCGCT 1 cut(s) 47
Eco57I CTGAAG 2 cut(s) 513, 843
EcoRII CCWGG 1 cut(s) 100
EcoT22I ATGCAT 1 cut(s) 463
Esp3I CGTCTC 1 cut(s) 670
FaeI CATG 5 cut(s) 416, 465, 811, 852, 1090
FalI AAGNNNNNCTT 4 cut(s) 633, 665, 665, 697
FatI CATG 5 cut(s) 412, 461, 807, 848, 1086
FauNDI CATATG 1 cut(s) 774
Fnu4HI GCNGC 5 cut(s) 44, 770, 789, 792, 1139
FokI GGATG 2 cut(s) 467, 994
Fsp4HI GCNGC 5 cut(s) 44, 770, 789, 792, 1139
FspBI CTAG 4 cut(s) 197, 572, 750, 756
GlaI GCGC 2 cut(s) 47, 760
GluI GCNGC 5 cut(s) 44, 770, 789, 792, 1139
HaeII RGCGCY 1 cut(s) 49
HapII CCGG 1 cut(s) 969
HgaI GACGC 1 cut(s) 687
HhaI GCGC 2 cut(s) 48, 761
Hin1II CATG 5 cut(s) 416, 465, 811, 852, 1090
Hin6I GCGC 2 cut(s) 46, 759
HinP1I GCGC 2 cut(s) 46, 759
HincII GTYRAC 2 cut(s) 1033, 1102
HindII GTYRAC 2 cut(s) 1033, 1102
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 7 cut(s) 114, 179, 281, 389, 581, 695, 925
HpaII CCGG 1 cut(s) 969
HphI GGTGA 6 cut(s) 82, 305, 311, 383, 398, 679
Hpy166II GTNNAC 3 cut(s) 245, 1033, 1102
Hpy188I TCNGA 6 cut(s) 232, 280, 439, 862, 924, 933
Hpy188III TCNNGA 7 cut(s) 158, 216, 413, 653, 876, 896, 1046
Hpy8I GTNNAC 3 cut(s) 245, 1033, 1102
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 6 cut(s) 28, 104, 132, 258, 326, 445
HpyCH4III ACNGT 1 cut(s) 710
HpyCH4IV ACGT 1 cut(s) 171
HpyF10VI GCNNNNNNNGC 1 cut(s) 539
HpyF3I CTNAG 6 cut(s) 156, 231, 480, 543, 645, 930
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 5 cut(s) 416, 465, 811, 852, 1090
HspAI GCGC 2 cut(s) 46, 759
Kzo9I GATC 2 cut(s) 745, 1089
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 1 cut(s) 547
Lsp1109I GCAGC 5 cut(s) 55, 775, 778, 781, 1150
LweI GCATC 2 cut(s) 394, 448
MaeI CTAG 4 cut(s) 197, 572, 750, 756
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 464
MalI GATC 2 cut(s) 747, 1091
MboI GATC 2 cut(s) 745, 1089
MfeI CAATTG 1 cut(s) 762
MflI RGATCY 1 cut(s) 745
MluCI AATT 7 cut(s) 525, 590, 636, 762, 870, 1068, 1129
MlyI GAGTC 1 cut(s) 173
Mph1103I ATGCAT 1 cut(s) 463
MroXI GAANNNNTTC 2 cut(s) 211, 580
MseI TTAA 2 cut(s) 168, 824
MslI CAYNNNNRTG 1 cut(s) 417
MspCI CTTAAG 1 cut(s) 823
MspI CCGG 1 cut(s) 969
MspR9I CCNGG 1 cut(s) 102
MunI CAATTG 1 cut(s) 762
MvaI CCWGG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 539
NdeI CATATG 1 cut(s) 774
NdeII GATC 2 cut(s) 745, 1089
NlaIII CATG 5 cut(s) 416, 465, 811, 852, 1090
NlaIV GGNNCC 2 cut(s) 237, 549
NmuCI GTSAC 1 cut(s) 464
NsiI ATGCAT 1 cut(s) 463
NspI RCATGY 3 cut(s) 465, 811, 852
PaeI GCATGC 1 cut(s) 852
PagI TCATGA 1 cut(s) 412
PciI ACATGT 1 cut(s) 807
PciSI GCTCTTC 1 cut(s) 186
PdmI GAANNNNTTC 2 cut(s) 211, 580
PfeI GAWTC 6 cut(s) 114, 281, 389, 581, 695, 925
PinAI ACCGGT 1 cut(s) 968
PkrI GCNGC 5 cut(s) 45, 771, 790, 793, 1140
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PscI ACATGT 1 cut(s) 807
Psp1406I AACGTT 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 237, 549
PsuI RGATCY 1 cut(s) 745
RsaI GTAC 3 cut(s) 89, 1109, 1127
RsaNI GTAC 3 cut(s) 88, 1108, 1126
RseI CAYNNNNRTG 1 cut(s) 417
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 2 cut(s) 168, 824
SatI GCNGC 5 cut(s) 44, 770, 789, 792, 1139
Sau3AI GATC 2 cut(s) 745, 1089
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 102
SfaNI GCATC 2 cut(s) 394, 448
SmiMI CAYNNNNRTG 1 cut(s) 417
SmlI CTYRAG 1 cut(s) 823
SmoI CTYRAG 1 cut(s) 823
SphI GCATGC 1 cut(s) 852
Sse9I AATT 7 cut(s) 525, 590, 636, 762, 870, 1068, 1129
SsiI CCGC 3 cut(s) 68, 135, 730
SspMI CTAG 4 cut(s) 197, 572, 750, 756
StyD4I CCNGG 1 cut(s) 100
TaaI ACNGT 1 cut(s) 710
TaiI ACGT 1 cut(s) 174
TaqI TCGA 2 cut(s) 627, 1151
TasI AATT 7 cut(s) 525, 590, 636, 762, 870, 1068, 1129
TatI WGTACW 2 cut(s) 1107, 1125
TfiI GAWTC 6 cut(s) 114, 281, 389, 581, 695, 925
Tru1I TTAA 2 cut(s) 168, 824
Tru9I TTAA 2 cut(s) 168, 824
TscAI CASTG 5 cut(s) 208, 295, 496, 918, 1005
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 5 cut(s) 43, 769, 788, 791, 1138
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 7 cut(s) 109, 204, 333, 552, 573, 966, 998
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 5 cut(s) 208, 295, 496, 918, 1005
Vha464I CTTAAG 1 cut(s) 823
XapI RAATTY 4 cut(s) 525, 590, 870, 1068
XceI RCATGY 3 cut(s) 465, 811, 852
XmnI GAANNNNTTC 2 cut(s) 211, 580
XspI CTAG 4 cut(s) 197, 572, 750, 756
Zsp2I ATGCAT 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.