pycom03g12680

THUMP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0012337
Physical Location & Seq
Reverse (-)
13396490 .. 13399803
3314 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g12680.3

Sequence Viewer

Length: 1200 bp
ATGGCGACGGACAACAAATCCACCAAGTCCAAGAAGGGGAAGCAGCGCTATCTCCCTTACAACAAAGCGGTGAAGAAGAAAGGCGCGTACCCATTACACCCAGGAGTGGAAGGATTCTTCATCACTTGCGATGGCGGAAGGGAACGCCAAGCCTCGCAGGAGGCCATTAATGTTATTGACTCTTTTTATGAAGAACTAGTCAGTGGAAAGGATTCGGGTTTAAACCTTTTTGAGGCACCCTCTAAACCTTCAAATAAGAAAATAGTGTTCTCGTATTCTGATTCTTCCAGTAGTGAGGGTGATGATGATGATGATGAAAAGAAACAAGAAGGAGATGAAAAGAAACAAGAAGGAGAGGACAAGAAACAAGGAGGAGAGGACAAGGAAGCAGAAGAAGAGGGTGAAGTGGGTGAAGAGAGTAAAGGTGATTCTCGTAGTGATGGTGCCAGTCATAATAATGCAACAAGTGAGAAATCAGAACACCAGAAGAAAAATGACACATGTGGAGAAAATAAAACTGGGGAAAACACTGATGACAAGAAAGGGGATAATTTAAGTAAGGAAATTTGTGCAAATGAAGCTGAGGAGCCACCAGCAAAGAAACAATGTCTAGGAACAGATTCATCAGAATGTACAATCCCATACAAAGTGGAAGACAAGTCCATTGATAAGCTAATTGAAGCCGAGCTTCAAGAACTGGGAGATAAGAACAAGAGACGCTTTTTCACCCTTGAATCGGGTTGCAACGGTGTTGTCTTTGTTCAAATGCGGAAGAGAGAGGGAGATCCTAGCCCTAATGCGATTGTGCAGCATATGATGACATCTGCTGCTGCAACGAAGAAACACATGTCAAGGTTTATCCTAAGAGTGTTACCCGTTGAAATAGCATGCTATTCTTCAGAAGAGGAAATTTCAAGAGCAATCAAACCACTTCTTGAACAGCACTTTCCAGTGGAAACTCAGAATCCTCAGAAGTTTGCAGTCCTGTATGAAGCCCGTGCAAACACCGGTATTGACAGGATGAAAATCATAAATGCAGTGGCAAAATCTGTGCCTGCCCCGCACAAAGTTGACCTCAGCAATCCTGATAAGACCATTGTTGTAGAAATTTGCAGGACTATTTGCTTGATCGGTGTTGTTGACAAGTACAAGCAGTTGGCCAAGTACAATTTGCGGCAGCTCACATCATCAAAGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
THUMP

Protein Analysis

400

Amino Acids

44.27

Weight (kDa)

5.65

Isoelectric Point (pI)

52.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12410
fragaria_vesca FvH4_3g28330 FvH4_3g28330
malus_domestica MD03G1170300.v1.1 MD11G1187800.v1.1
prunus_persica Prupe.4G256800_v2.0.a1
pyrus_communis pycom03g12680 pycom11g16450
rosa_chinensis RchiOBHm_Chr5g0051211
rosa_laevigata RLG00000034763
rosa_multiflora Rmu_sc0002385.1_g000021 Rmu_sc0042180.1_g000001
rosa_roxburghii Rroxscaffold_1G00029150
rosa_rugosa Rorug05G0266700
rosa_samantha Rh5AG339000 Rh5BG348900 Rh5CG375900 Rh5DG361800
rosa_wichuraiana Rw5G032030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 235, 443
AccII CGCG 1 cut(s) 86
AciI CCGC 5 cut(s) 68, 135, 769, 1061, 1174
AclWI GGATC 1 cut(s) 779
AcoI YGGCCR 1 cut(s) 1158
AcsI RAATTY 3 cut(s) 564, 909, 1107
AcuI CTGAAG 1 cut(s) 882
AfaI GTAC 4 cut(s) 89, 634, 1148, 1166
AfeI AGCGCT 1 cut(s) 47
AfiI CCNNNNNNNGG 4 cut(s) 36, 106, 232, 736
AflIII ACRYGT 2 cut(s) 500, 846
AgeI ACCGGT 1 cut(s) 1007
AgsI TTSAA 8 cut(s) 252, 680, 692, 734, 764, 881, 915, 938
AhlI ACTAGT 1 cut(s) 196
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 4 cut(s) 581, 673, 688, 1180
AluI AGCT 4 cut(s) 581, 673, 688, 1180
Alw26I GTCTC 1 cut(s) 709
AlwI GGATC 1 cut(s) 779
Aor51HI AGCGCT 1 cut(s) 47
AoxI GGCC 2 cut(s) 162, 1158
ApeKI GCWGC 5 cut(s) 43, 808, 827, 830, 1177
ApoI RAATTY 3 cut(s) 564, 909, 1107
AseI ATTAAT 1 cut(s) 168
AsiGI ACCGGT 1 cut(s) 1007
Asp700I GAANNNNTTC 2 cut(s) 211, 619
AspLEI GCGC 2 cut(s) 48, 86
AsuHPI GGTGA 6 cut(s) 82, 311, 413, 422, 437, 718
BalI TGGCCA 1 cut(s) 1160
BanI GGYRCC 2 cut(s) 235, 443
BbsI GAAGAC 1 cut(s) 660
BbvCI CCTCAGC 2 cut(s) 582, 1076
BbvI GCAGC 5 cut(s) 55, 814, 817, 820, 1189
BccI CCATC 2 cut(s) 125, 434
BciT130I CCWGG 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 709
BcuI ACTAGT 1 cut(s) 196
BfaI CTAG 3 cut(s) 197, 611, 789
BfoI RGCGCY 1 cut(s) 49
BisI GCNGC 6 cut(s) 44, 809, 828, 831, 1175, 1178
BlsI GCNGC 6 cut(s) 45, 810, 829, 832, 1176, 1179
Bme1390I CCNGG 1 cut(s) 102
BmiI GGNNCC 3 cut(s) 237, 445, 588
BmrFI CCNGG 1 cut(s) 102
BmrI ACTGGG 2 cut(s) 528, 707
BmuI ACTGGG 2 cut(s) 528, 707
BpiI GAAGAC 1 cut(s) 660
BplI GAGNNNNNCTC 2 cut(s) 224, 256
Bpu10I CCTNAGC 2 cut(s) 582, 1076
BsaBI GATNNNNATC 1 cut(s) 1025
BsaJI CCNNGG 1 cut(s) 100
BsaWI WCCGGW 1 cut(s) 1007
Bsc4I CCNNNNNNNGG 4 cut(s) 36, 106, 232, 736
Bse118I RCCGGY 1 cut(s) 1007
Bse1I ACTGG 5 cut(s) 288, 447, 523, 702, 950
Bse8I GATNNNNATC 1 cut(s) 1025
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 1 cut(s) 1026
BseJI GATNNNNATC 1 cut(s) 1025
BseLI CCNNNNNNNGG 4 cut(s) 36, 106, 232, 736
BseMII CTCAG 4 cut(s) 573, 974, 983, 1090
BseNI ACTGG 5 cut(s) 288, 447, 523, 702, 950
BseRI GAGGAG 2 cut(s) 387, 599
BseXI GCAGC 5 cut(s) 55, 814, 817, 820, 1189
BsgI GTGCAG 1 cut(s) 827
Bsh1236I CGCG 1 cut(s) 86
BshFI GGCC 2 cut(s) 164, 1160
BshNI GGYRCC 2 cut(s) 235, 443
BshTI ACCGGT 1 cut(s) 1007
BsiSI CCGG 1 cut(s) 1008
BslI CCNNNNNNNGG 4 cut(s) 36, 106, 232, 736
BsmAI GTCTC 1 cut(s) 709
BsmBI CGTCTC 1 cut(s) 709
BsnI GGCC 2 cut(s) 164, 1160
Bsp1407I TGTACA 1 cut(s) 632
Bsp143I GATC 2 cut(s) 784, 1128
BspACI CCGC 5 cut(s) 68, 135, 769, 1061, 1174
BspANI GGCC 2 cut(s) 164, 1160
BspCNI CTCAG 4 cut(s) 574, 973, 982, 1089
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 3 cut(s) 237, 445, 588
BspPI GGATC 1 cut(s) 779
BspT107I GGYRCC 2 cut(s) 235, 443
BsrFI RCCGGY 1 cut(s) 1007
BsrGI TGTACA 1 cut(s) 632
BsrI ACTGG 5 cut(s) 288, 447, 523, 702, 950
BssAI RCCGGY 1 cut(s) 1007
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 2 cut(s) 784, 1128
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 749
Bst6I CTCTTC 4 cut(s) 390, 408, 767, 897
BstAUI TGTACA 1 cut(s) 632
BstC8I GCNNGC 2 cut(s) 889, 1056
BstDEI CTNAG 5 cut(s) 582, 863, 960, 969, 1076
BstENI CCTNNNNNAGG 1 cut(s) 230
BstF5I GGATG 1 cut(s) 1026
BstFNI CGCG 1 cut(s) 86
BstH2I RGCGCY 1 cut(s) 49
BstHHI GCGC 2 cut(s) 48, 86
BstKTI GATC 2 cut(s) 787, 1131
BstMAI GTCTC 1 cut(s) 709
BstMBI GATC 2 cut(s) 784, 1128
BstMWI GCNNNNNNNGC 2 cut(s) 578, 1060
BstNI CCWGG 1 cut(s) 102
BstNSI RCATGY 3 cut(s) 504, 850, 891
BstSCI CCNGG 1 cut(s) 100
BstUI CGCG 1 cut(s) 86
BstV1I GCAGC 5 cut(s) 55, 814, 817, 820, 1189
BstV2I GAAGAC 1 cut(s) 660
BstX2I RGATCY 1 cut(s) 784
BstYI RGATCY 1 cut(s) 784
BsuRI GGCC 2 cut(s) 164, 1160
BtgZI GCGATG 1 cut(s) 144
BtsCI GGATG 1 cut(s) 1026
BtsI GCAGTG 1 cut(s) 1044
BtsIMutI CAGTG 4 cut(s) 208, 528, 957, 1044
Cac8I GCNNGC 2 cut(s) 889, 1056
CfoI GCGC 2 cut(s) 48, 86
Cfr10I RCCGGY 1 cut(s) 1007
CseI GACGC 1 cut(s) 726
Csp6I GTAC 4 cut(s) 88, 633, 1147, 1165
CspAI ACCGGT 1 cut(s) 1007
CviAII CATG 3 cut(s) 501, 847, 888
CviQI GTAC 4 cut(s) 88, 633, 1147, 1165
DdeI CTNAG 5 cut(s) 582, 863, 960, 969, 1076
DpnI GATC 2 cut(s) 786, 1130
DpnII GATC 2 cut(s) 784, 1128
DraI TTTAAA 1 cut(s) 222
EaeI YGGCCR 1 cut(s) 1158
Eam1104I CTCTTC 4 cut(s) 390, 408, 767, 897
EarI CTCTTC 4 cut(s) 390, 408, 767, 897
EciI GGCGGA 1 cut(s) 150
Eco47III AGCGCT 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 882
EcoNI CCTNNNNNAGG 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 100
Esp3I CGTCTC 1 cut(s) 709
FaeI CATG 3 cut(s) 504, 850, 891
FalI AAGNNNNNCTT 4 cut(s) 672, 704, 704, 736
FatI CATG 3 cut(s) 500, 846, 887
FauI CCCGC 1 cut(s) 1068
FauNDI CATATG 1 cut(s) 813
Fnu4HI GCNGC 6 cut(s) 44, 809, 828, 831, 1175, 1178
FokI GGATG 1 cut(s) 1033
Fsp4HI GCNGC 6 cut(s) 44, 809, 828, 831, 1175, 1178
FspBI CTAG 3 cut(s) 197, 611, 789
GlaI GCGC 2 cut(s) 47, 85
GluI GCNGC 6 cut(s) 44, 809, 828, 831, 1175, 1178
HaeII RGCGCY 1 cut(s) 49
HaeIII GGCC 2 cut(s) 164, 1160
HapII CCGG 1 cut(s) 1008
HgaI GACGC 1 cut(s) 726
HhaI GCGC 2 cut(s) 48, 86
Hin1II CATG 3 cut(s) 504, 850, 891
Hin6I GCGC 2 cut(s) 46, 84
HinP1I GCGC 2 cut(s) 46, 84
HincII GTYRAC 2 cut(s) 1072, 1141
HindII GTYRAC 2 cut(s) 1072, 1141
HinfI GANTC 8 cut(s) 114, 179, 212, 281, 428, 620, 734, 964
HpaII CCGG 1 cut(s) 1008
HphI GGTGA 6 cut(s) 82, 311, 413, 422, 437, 718
Hpy166II GTNNAC 2 cut(s) 1072, 1141
Hpy188I TCNGA 6 cut(s) 280, 478, 628, 901, 963, 972
Hpy188III TCNNGA 4 cut(s) 692, 915, 935, 1085
Hpy8I GTNNAC 2 cut(s) 1072, 1141
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 6 cut(s) 28, 104, 132, 258, 323, 344
HpyCH4III ACNGT 1 cut(s) 749
HpyCH4V TGCA 9 cut(s) 461, 572, 744, 808, 833, 980, 1001, 1037, 1113
HpyF10VI GCNNNNNNNGC 2 cut(s) 578, 1060
HpyF3I CTNAG 5 cut(s) 582, 863, 960, 969, 1076
Hsp92II CATG 3 cut(s) 504, 850, 891
HspAI GCGC 2 cut(s) 46, 84
Kzo9I GATC 2 cut(s) 784, 1128
LmnI GCTCC 1 cut(s) 586
Lsp1109I GCAGC 5 cut(s) 55, 814, 817, 820, 1189
MaeI CTAG 3 cut(s) 197, 611, 789
MaeIII GTNAC 1 cut(s) 870
MalI GATC 2 cut(s) 786, 1130
MboI GATC 2 cut(s) 784, 1128
MflI RGATCY 1 cut(s) 784
MlsI TGGCCA 1 cut(s) 1160
MluCI AATT 6 cut(s) 550, 564, 675, 909, 1107, 1168
MluNI TGGCCA 1 cut(s) 1160
MlyI GAGTC 1 cut(s) 173
Mox20I TGGCCA 1 cut(s) 1160
MroXI GAANNNNTTC 2 cut(s) 211, 619
MscI TGGCCA 1 cut(s) 1160
MseI TTAA 3 cut(s) 168, 221, 554
MslI CAYNNNNRTG 2 cut(s) 456, 628
Msp20I TGGCCA 1 cut(s) 1160
MspI CCGG 1 cut(s) 1008
MspR9I CCNGG 1 cut(s) 102
MssI GTTTAAAC 1 cut(s) 222
MvaI CCWGG 1 cut(s) 102
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 2 cut(s) 578, 1060
NdeI CATATG 1 cut(s) 813
NdeII GATC 2 cut(s) 784, 1128
NlaIII CATG 3 cut(s) 504, 850, 891
NlaIV GGNNCC 3 cut(s) 237, 445, 588
NmeAIII GCCGAG 1 cut(s) 709
NspI RCATGY 3 cut(s) 504, 850, 891
PaeI GCATGC 1 cut(s) 891
PciI ACATGT 2 cut(s) 500, 846
PdmI GAANNNNTTC 2 cut(s) 211, 619
PfeI GAWTC 7 cut(s) 114, 212, 281, 428, 620, 734, 964
PinAI ACCGGT 1 cut(s) 1007
PkrI GCNGC 6 cut(s) 45, 810, 829, 832, 1176, 1179
PleI GAGTC 1 cut(s) 173
PmeI GTTTAAAC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 173
PscI ACATGT 2 cut(s) 500, 846
PshBI ATTAAT 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 3 cut(s) 237, 445, 588
PsuI RGATCY 1 cut(s) 784
RsaI GTAC 4 cut(s) 89, 634, 1148, 1166
RsaNI GTAC 4 cut(s) 88, 633, 1147, 1165
RseI CAYNNNNRTG 2 cut(s) 456, 628
SaqAI TTAA 3 cut(s) 168, 221, 554
SatI GCNGC 6 cut(s) 44, 809, 828, 831, 1175, 1178
Sau3AI GATC 2 cut(s) 784, 1128
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 102
SetI ASST 9 cut(s) 228, 250, 427, 583, 675, 690, 857, 1077, 1182
SmiMI CAYNNNNRTG 2 cut(s) 456, 628
SpeI ACTAGT 1 cut(s) 196
SphI GCATGC 1 cut(s) 891
Sse9I AATT 6 cut(s) 550, 564, 675, 909, 1107, 1168
SsiI CCGC 5 cut(s) 68, 135, 769, 1061, 1174
SspMI CTAG 3 cut(s) 197, 611, 789
StyD4I CCNGG 1 cut(s) 100
TaaI ACNGT 1 cut(s) 749
TasI AATT 6 cut(s) 550, 564, 675, 909, 1107, 1168
TatI WGTACW 3 cut(s) 632, 1146, 1164
TauI GCSGC 1 cut(s) 1177
TfiI GAWTC 7 cut(s) 114, 212, 281, 428, 620, 734, 964
Tru1I TTAA 3 cut(s) 168, 221, 554
Tru9I TTAA 3 cut(s) 168, 221, 554
TscAI CASTG 4 cut(s) 208, 535, 957, 1044
TseI GCWGC 5 cut(s) 43, 808, 827, 830, 1177
TspDTI ATGAA 8 cut(s) 109, 204, 330, 351, 591, 612, 1005, 1037
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 4 cut(s) 208, 535, 957, 1044
VspI ATTAAT 1 cut(s) 168
XagI CCTNNNNNAGG 1 cut(s) 230
XapI RAATTY 3 cut(s) 564, 909, 1107
XceI RCATGY 3 cut(s) 504, 850, 891
XmnI GAANNNNTTC 2 cut(s) 211, 619
XspI CTAG 3 cut(s) 197, 611, 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.