RchiOBHm_Chr5g0051211

THUMP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0012337
Physical Location & Seq
Reverse (-)
52203487 .. 52208967
5481 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32870

Sequence Viewer

Length: 1176 bp
ATGGCGACTGAGAATAATAAATCCAAGTGGTCCTCAGCCCCCAAGTCCAAGAAGGGAAAGACTCGTTACCTTCCTCACAACAGGTCGGTGAAGAAGAAAGGGTCGTATCCTTTACACCCGGGCGTGGAAGGATTCTTTATCACTTGTGATGGCGGCAGGGAACGCCAGGCCTCTCATGAAGCTCTCAACGTTATTGACTCGTTTTTTGAAGAGCTTGTACAGGGGAAGGATTCAGGGATAAATCTTTCTGAGGCACCCAGTAAACCTTTAAATAAAAAAATCAAGTTCACATACTCTGATTCTTCTAGTAGTGATGATGATAATGATGATGATAACAAAGAGGAGGGAGAAACTGAGGAACCTGTTGAAGACAAGGAGGTGGTCAAGGGAGAAAATAAATCTGATACTTGTAGAGATGATGATGGTAGTCATGATAATCAAATAAGCGAGACATCAGATCTCGAGAAGAAAGACAATGCTCTCTCTGAAAATAAACCAGAGGAAGATACTAAAGACGACAAAGAGGGTAGTATAAGTAAAGAGATTTCTGCAAAAGAAGGTGAAGAGCCACCAGCAAAGAAACAATGTCTAGGAACAGATTCATCAAAAAGGATCCCGGATAAAGTAGAAGAGAAATCCATTGATAAACTAATTGAAGATGAGCTCCAAGAACTTAAAGATAAGAACAAGAGGCGCTTTGTCAACCTTGAGTCAGGTTGTAATGGTGTCGTCTTCGTTCAAATGCGGAAGAGAGATGGAGATCCTGGCCCCAAAGATATTGTACAGCATATGATGACATCTGCTGCTGCAACGAGGAAACACATGTCGAGGTTTATCTTAAGGGTATTACCTGTCGAAGTATCGTGCTATGCTTCGGAAGAGGAGATTTCCAGAGCAATTAAACCTCTTCTTGCACAATATTTTCCCTTGGAAACTCAGAGTCCTCGGAAGTTTGCAGTACTTTACGGAGCACGGGCAAATACTGGTATTGATAGGATGAAAATCATAGATGCAGTGGCAAAATCTGTGCCTGAACCTCACAAAGTTGACCTTAGCAACCCTGATTTGAACATTGTAGTTGAAATTTGCAAGACTATTTGCTTGATTGGTGTTGTTGAAAATTATAAGCAGTTGGCCAAGTACAACCTGAGGCAGCTCACATCACCTAAGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
THUMP

Protein Analysis

391

Amino Acids

43.76

Weight (kDa)

5.64

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
THUMP PF02926 290 - 372 1.1e-16 THUMP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12410
fragaria_vesca FvH4_3g28330 FvH4_3g28330
malus_domestica MD03G1170300.v1.1 MD11G1187800.v1.1
prunus_persica Prupe.4G256800_v2.0.a1
pyrus_communis pycom03g12680 pycom11g16450
rosa_chinensis RchiOBHm_Chr5g0051211
rosa_laevigata RLG00000034763
rosa_multiflora Rmu_sc0002385.1_g000021 Rmu_sc0042180.1_g000001
rosa_roxburghii Rroxscaffold_1G00029150
rosa_rugosa Rorug05G0266700
rosa_samantha Rh5AG339000 Rh5BG348900 Rh5CG375900 Rh5DG361800
rosa_wichuraiana Rw5G032030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1125
AccB1I GGYRCC 1 cut(s) 253
AciI CCGC 2 cut(s) 153, 745
AclI AACGTT 1 cut(s) 189
AclWI GGATC 3 cut(s) 607, 620, 755
AcoI YGGCCR 1 cut(s) 1134
AcsI RAATTY 1 cut(s) 1083
AfaI GTAC 4 cut(s) 219, 783, 960, 1142
AfiI CCNNNNNNNGG 1 cut(s) 124
AflII CTTAAG 1 cut(s) 838
AflIII ACRYGT 1 cut(s) 822
AgsI TTSAA 7 cut(s) 209, 368, 656, 740, 1069, 1082, 1118
AjnI CCWGG 2 cut(s) 165, 763
AluBI AGCT 4 cut(s) 182, 214, 664, 1156
AluI AGCT 4 cut(s) 182, 214, 664, 1156
Alw21I GWGCWC 2 cut(s) 666, 973
Alw26I GTCTC 1 cut(s) 443
AlwI GGATC 3 cut(s) 607, 620, 755
Ama87I CYCGRG 2 cut(s) 118, 461
AoxI GGCC 3 cut(s) 168, 766, 1134
ApeKI GCWGC 3 cut(s) 803, 806, 1153
ApoI RAATTY 1 cut(s) 1083
ArsI GACNNNNNNTTYG 2 cut(s) 188, 220
Asp700I GAANNNNTTC 1 cut(s) 598
AspLEI GCGC 1 cut(s) 696
AspS9I GGNCC 2 cut(s) 30, 767
AsuC2I CCSGG 3 cut(s) 119, 120, 617
AsuHPI GGTGA 3 cut(s) 100, 572, 1155
AvaI CYCGRG 2 cut(s) 118, 461
AvaII GGWCC 1 cut(s) 30
AxyI CCTNAGG 1 cut(s) 1148
BalI TGGCCA 1 cut(s) 1136
BamHI GGATCC 1 cut(s) 612
BanI GGYRCC 1 cut(s) 253
BanII GRGCYC 1 cut(s) 666
BarI GAAGNNNNNNTAC 2 cut(s) 201, 233
BbsI GAAGAC 2 cut(s) 375, 724
Bbv12I GWGCWC 2 cut(s) 666, 973
BbvCI CCTCAGC 1 cut(s) 34
BbvI GCAGC 3 cut(s) 790, 793, 1165
BccI CCATC 3 cut(s) 143, 416, 749
BciT130I CCWGG 2 cut(s) 167, 765
BciVI GTATCC 1 cut(s) 117
BcnI CCSGG 3 cut(s) 119, 120, 617
BcoDI GTCTC 1 cut(s) 443
BfaI CTAG 2 cut(s) 306, 590
BfoI RGCGCY 1 cut(s) 697
BfrI CTTAAG 1 cut(s) 838
BfuI GTATCC 1 cut(s) 117
BglII AGATCT 1 cut(s) 457
BisI GCNGC 4 cut(s) 154, 804, 807, 1154
BlsI GCNGC 4 cut(s) 155, 805, 808, 1155
BmcAI AGTACT 1 cut(s) 960
Bme1390I CCNGG 5 cut(s) 119, 120, 167, 617, 765
Bme18I GGWCC 1 cut(s) 30
BmeT110I CYCGRG 2 cut(s) 118, 461
BmgT120I GGNCC 2 cut(s) 30, 767
BmiI GGNNCC 4 cut(s) 255, 360, 614, 769
BmrFI CCNGG 5 cut(s) 119, 120, 167, 617, 765
BmrI ACTGGG 1 cut(s) 252
BmsI GCATC 1 cut(s) 1000
BmuI ACTGGG 1 cut(s) 252
BpiI GAAGAC 2 cut(s) 375, 724
Bpu10I CCTNAGC 3 cut(s) 34, 1052, 1167
BpuEI CTTGAG 1 cut(s) 728
BpuMI CCSGG 3 cut(s) 119, 120, 617
BsaBI GATNNNNATC 2 cut(s) 759, 1001
BsaJI CCNNGG 3 cut(s) 118, 927, 944
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse1I ACTGG 2 cut(s) 258, 988
Bse21I CCTNAGG 1 cut(s) 1148
Bse8I GATNNNNATC 2 cut(s) 759, 1001
BseBI CCWGG 2 cut(s) 167, 765
BseDI CCNNGG 3 cut(s) 118, 927, 944
BseGI GGATG 1 cut(s) 1002
BseJI GATNNNNATC 2 cut(s) 759, 1001
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 5 cut(s) 48, 240, 345, 950, 1139
BseNI ACTGG 2 cut(s) 258, 988
BseRI GAGGAG 2 cut(s) 356, 896
BseXI GCAGC 3 cut(s) 790, 793, 1165
BshFI GGCC 3 cut(s) 170, 768, 1136
BshNI GGYRCC 1 cut(s) 253
BsiHKAI GWGCWC 2 cut(s) 666, 973
BsiHKCI CYCGRG 2 cut(s) 118, 461
BsiSI CCGG 2 cut(s) 119, 617
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 1 cut(s) 443
BsnI GGCC 3 cut(s) 170, 768, 1136
BsoBI CYCGRG 2 cut(s) 118, 461
Bsp1286I GDGCHC 2 cut(s) 666, 973
Bsp1407I TGTACA 2 cut(s) 217, 781
Bsp143I GATC 3 cut(s) 457, 612, 760
BspACI CCGC 2 cut(s) 153, 745
BspANI GGCC 3 cut(s) 170, 768, 1136
BspCNI CTCAG 5 cut(s) 47, 241, 346, 949, 1140
BspHI TCATGA 2 cut(s) 175, 430
BspLI GGNNCC 4 cut(s) 255, 360, 614, 769
BspPI GGATC 3 cut(s) 607, 620, 755
BspQI GCTCTTC 2 cut(s) 204, 558
BspT107I GGYRCC 1 cut(s) 253
BspTI CTTAAG 1 cut(s) 838
BsrGI TGTACA 2 cut(s) 217, 781
BsrI ACTGG 2 cut(s) 258, 988
BssECI CCNNGG 3 cut(s) 118, 927, 944
BssMI GATC 3 cut(s) 457, 612, 760
BssT1I CCWWGG 1 cut(s) 927
Bst2UI CCWGG 2 cut(s) 167, 765
Bst6I CTCTTC 6 cut(s) 204, 558, 624, 743, 873, 912
BstAFI CTTAAG 1 cut(s) 838
BstAUI TGTACA 2 cut(s) 217, 781
BstDEI CTNAG 8 cut(s) 9, 34, 249, 354, 936, 1052, 1148, 1167
BstF5I GGATG 1 cut(s) 1002
BstH2I RGCGCY 1 cut(s) 697
BstHHI GCGC 1 cut(s) 696
BstKTI GATC 3 cut(s) 460, 615, 763
BstMAI GTCTC 1 cut(s) 443
BstMBI GATC 3 cut(s) 457, 612, 760
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNI CCWGG 2 cut(s) 167, 765
BstNSI RCATGY 1 cut(s) 826
BstSCI CCNGG 5 cut(s) 117, 118, 165, 615, 763
BstV1I GCAGC 3 cut(s) 790, 793, 1165
BstV2I GAAGAC 2 cut(s) 375, 724
BstX2I RGATCY 3 cut(s) 457, 612, 760
BstYI RGATCY 3 cut(s) 457, 612, 760
Bsu36I CCTNAGG 1 cut(s) 1148
BsuI GTATCC 1 cut(s) 117
BsuRI GGCC 3 cut(s) 170, 768, 1136
BtsCI GGATG 1 cut(s) 1002
BtsI GCAGTG 1 cut(s) 1020
BtsIMutI CAGTG 1 cut(s) 1020
CciI TCATGA 2 cut(s) 175, 430
CfoI GCGC 1 cut(s) 696
Cfr13I GGNCC 2 cut(s) 30, 767
Cfr9I CCCGGG 1 cut(s) 118
Csp6I GTAC 4 cut(s) 218, 782, 959, 1141
CviAII CATG 3 cut(s) 176, 431, 823
CviQI GTAC 4 cut(s) 218, 782, 959, 1141
DdeI CTNAG 8 cut(s) 9, 34, 249, 354, 936, 1052, 1148, 1167
DpnI GATC 3 cut(s) 459, 614, 762
DpnII GATC 3 cut(s) 457, 612, 760
DraI TTTAAA 1 cut(s) 270
EaeI YGGCCR 1 cut(s) 1134
Eam1104I CTCTTC 6 cut(s) 204, 558, 624, 743, 873, 912
EarI CTCTTC 6 cut(s) 204, 558, 624, 743, 873, 912
Ecl136II GAGCTC 1 cut(s) 664
Eco130I CCWWGG 1 cut(s) 927
Eco147I AGGCCT 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 666
Eco47I GGWCC 1 cut(s) 30
Eco53kI GAGCTC 1 cut(s) 664
Eco81I CCTNAGG 1 cut(s) 1148
Eco88I CYCGRG 2 cut(s) 118, 461
EcoICRI GAGCTC 1 cut(s) 664
EcoRII CCWGG 2 cut(s) 165, 763
EcoT14I CCWWGG 1 cut(s) 927
EcoT38I GRGCYC 1 cut(s) 666
ErhI CCWWGG 1 cut(s) 927
FaeI CATG 3 cut(s) 179, 434, 826
FalI AAGNNNNNCTT 4 cut(s) 680, 712, 1035, 1067
FatI CATG 3 cut(s) 175, 430, 822
FauNDI CATATG 1 cut(s) 789
Fnu4HI GCNGC 4 cut(s) 154, 804, 807, 1154
FokI GGATG 1 cut(s) 1009
FriOI GRGCYC 1 cut(s) 666
Fsp4HI GCNGC 4 cut(s) 154, 804, 807, 1154
FspBI CTAG 2 cut(s) 306, 590
GlaI GCGC 1 cut(s) 695
GluI GCNGC 4 cut(s) 154, 804, 807, 1154
HaeII RGCGCY 1 cut(s) 697
HaeIII GGCC 3 cut(s) 170, 768, 1136
HapII CCGG 2 cut(s) 119, 617
HhaI GCGC 1 cut(s) 696
Hin1II CATG 3 cut(s) 179, 434, 826
Hin6I GCGC 1 cut(s) 694
HinP1I GCGC 1 cut(s) 694
HincII GTYRAC 2 cut(s) 703, 1048
HindII GTYRAC 2 cut(s) 703, 1048
HinfI GANTC 8 cut(s) 61, 132, 197, 230, 299, 599, 710, 940
HpaII CCGG 2 cut(s) 119, 617
HphI GGTGA 3 cut(s) 100, 572, 1155
Hpy166II GTNNAC 4 cut(s) 263, 288, 703, 1048
Hpy188I TCNGA 8 cut(s) 250, 298, 403, 457, 487, 877, 939, 948
Hpy188III TCNNGA 5 cut(s) 176, 431, 461, 463, 891
Hpy8I GTNNAC 4 cut(s) 263, 288, 703, 1048
HpyAV CCTTC 5 cut(s) 46, 80, 122, 220, 551
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 6 cut(s) 551, 809, 914, 956, 1013, 1089
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 8 cut(s) 9, 34, 249, 354, 936, 1052, 1148, 1167
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 3 cut(s) 179, 434, 826
HspAI GCGC 1 cut(s) 694
Kzo9I GATC 3 cut(s) 457, 612, 760
LguI GCTCTTC 2 cut(s) 204, 558
LmnI GCTCC 2 cut(s) 669, 968
Lsp1109I GCAGC 3 cut(s) 790, 793, 1165
LweI GCATC 1 cut(s) 1000
MaeI CTAG 2 cut(s) 306, 590
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 65
MalI GATC 3 cut(s) 459, 614, 762
MboI GATC 3 cut(s) 457, 612, 760
MflI RGATCY 3 cut(s) 457, 612, 760
MhlI GDGCHC 2 cut(s) 666, 973
MlsI TGGCCA 1 cut(s) 1136
MluCI AATT 4 cut(s) 651, 897, 1083, 1120
MluNI TGGCCA 1 cut(s) 1136
MlyI GAGTC 4 cut(s) 55, 191, 719, 949
Mox20I TGGCCA 1 cut(s) 1136
MroXI GAANNNNTTC 1 cut(s) 598
MscI TGGCCA 1 cut(s) 1136
MseI TTAA 4 cut(s) 269, 675, 839, 900
Msp20I TGGCCA 1 cut(s) 1136
MspCI CTTAAG 1 cut(s) 838
MspI CCGG 2 cut(s) 119, 617
MspR9I CCNGG 5 cut(s) 119, 120, 167, 617, 765
MvaI CCWGG 2 cut(s) 167, 765
MwoI GCNNNNNNNGC 1 cut(s) 162
NciI CCSGG 3 cut(s) 119, 120, 617
NdeI CATATG 1 cut(s) 789
NdeII GATC 3 cut(s) 457, 612, 760
NlaIII CATG 3 cut(s) 179, 434, 826
NlaIV GGNNCC 4 cut(s) 255, 360, 614, 769
NspI RCATGY 1 cut(s) 826
PaeR7I CTCGAG 1 cut(s) 461
PagI TCATGA 2 cut(s) 175, 430
PceI AGGCCT 1 cut(s) 170
PciI ACATGT 1 cut(s) 822
PciSI GCTCTTC 2 cut(s) 204, 558
PdmI GAANNNNTTC 1 cut(s) 598
PfeI GAWTC 4 cut(s) 132, 230, 299, 599
PfoI TCCNGGA 1 cut(s) 615
PkrI GCNGC 4 cut(s) 155, 805, 808, 1155
PleI GAGTC 4 cut(s) 55, 191, 718, 948
PpsI GAGTC 4 cut(s) 55, 191, 718, 948
PscI ACATGT 1 cut(s) 822
PsiI TTATAA 1 cut(s) 1125
Psp124BI GAGCTC 1 cut(s) 666
Psp1406I AACGTT 1 cut(s) 189
Psp6I CCWGG 2 cut(s) 165, 763
PspGI CCWGG 2 cut(s) 165, 763
PspN4I GGNNCC 4 cut(s) 255, 360, 614, 769
PspPI GGNCC 2 cut(s) 30, 767
PsuI RGATCY 3 cut(s) 457, 612, 760
RsaI GTAC 4 cut(s) 219, 783, 960, 1142
RsaNI GTAC 4 cut(s) 218, 782, 959, 1141
SacI GAGCTC 1 cut(s) 666
SapI GCTCTTC 2 cut(s) 204, 558
SaqAI TTAA 4 cut(s) 269, 675, 839, 900
SatI GCNGC 4 cut(s) 154, 804, 807, 1154
Sau3AI GATC 3 cut(s) 457, 612, 760
Sau96I GGNCC 2 cut(s) 30, 767
ScaI AGTACT 1 cut(s) 960
SchI GAGTC 4 cut(s) 55, 191, 719, 949
ScrFI CCNGG 5 cut(s) 119, 120, 167, 617, 765
SduI GDGCHC 2 cut(s) 666, 973
SfaNI GCATC 1 cut(s) 1000
Sfr274I CTCGAG 1 cut(s) 461
SinI GGWCC 1 cut(s) 30
SlaI CTCGAG 1 cut(s) 461
SmaI CCCGGG 1 cut(s) 120
SmlI CTYRAG 3 cut(s) 461, 707, 838
SmoI CTYRAG 3 cut(s) 461, 707, 838
Sse9I AATT 4 cut(s) 651, 897, 1083, 1120
SseBI AGGCCT 1 cut(s) 170
SsiI CCGC 2 cut(s) 153, 745
SspI AATATT 1 cut(s) 920
SspMI CTAG 2 cut(s) 306, 590
SstI GAGCTC 1 cut(s) 666
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 5 cut(s) 117, 118, 165, 615, 763
StyI CCWWGG 1 cut(s) 927
TaiI ACGT 1 cut(s) 192
TaqI TCGA 3 cut(s) 462, 827, 855
TasI AATT 4 cut(s) 651, 897, 1083, 1120
TatI WGTACW 4 cut(s) 217, 781, 958, 1140
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 4 cut(s) 132, 230, 299, 599
Tru1I TTAA 4 cut(s) 269, 675, 839, 900
Tru9I TTAA 4 cut(s) 269, 675, 839, 900
TscAI CASTG 1 cut(s) 1020
TseI GCWGC 3 cut(s) 803, 806, 1153
TspDTI ATGAA 3 cut(s) 192, 591, 1013
TspGWI ACGGA 1 cut(s) 981
TspMI CCCGGG 1 cut(s) 118
TspRI CASTG 1 cut(s) 1020
Vha464I CTTAAG 1 cut(s) 838
VpaK11BI GGWCC 1 cut(s) 30
XapI RAATTY 1 cut(s) 1083
XceI RCATGY 1 cut(s) 826
XhoI CTCGAG 1 cut(s) 461
XmaI CCCGGG 1 cut(s) 118
XmnI GAANNNNTTC 1 cut(s) 598
XspI CTAG 2 cut(s) 306, 590
ZrmI AGTACT 1 cut(s) 960
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.