Rmu_sc0002385.1_g000021

THUMP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002385.1
OG0012337
Physical Location & Seq
Forward (+)
86879 .. 90094
3216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002385.1_g000021.1.cds

Sequence Viewer

Length: 1116 bp
atggcgactgagaataataaatccaagtggtcctcagcccccaagtccaagaagggaaagactcgttaccttcctcacaacaggtcggtgaagaagaaagggtcgtatcctttacacccgggggtggaaggattctttatcacttgtgatggcggcagggaacgccaggcctctcatgaagctctcaacgttattgactcgttttttgaagagcttgtacaggggaaggattcagggataaatctttctgaggcacccagtaaacctttaaataaaaaaatcaagttcacatactctgattcttctagtagtgatgatgataatgatgatgataacaaagaggagggagaaactgaggaacctgttgaagacaaggaggtggtcaaggaagaaaataaatctgatacttgtagagatgatgacggtagtcatgataatcaaataagtgagacaccagatctcgagaagaaagacaatgctctctgtgaaaataaaccagaggaagatactaaagacgacaaagagggtagtatgagtaaagagatttctgcaaaagaagctgaagagccaccagcaaagaaacaatgtctaggaacagattcatcaaaaaggatcccggataaagtagaagagaagtccattgataaactaattgacgatgagctccaagaacttaaagataagaacaagaggcgctttgtcaaccttgagtcaggttgtaatggtgtcgtcttcgttcaaatgcggaagagagatggagatcctggccccaaagatattgtacagcatatgatgacatctgctgctgcaacaaggaaacacatgtcgaggtttatcttaagggtattgcctgtcgaagtatcatgctatgcttcggaagaggagatttccagagcaattaaacctcttcttgcacaatattttcccttggaaactcagagtcctcggaaggtgagactatatttcatcgtttctcatctctcttctcatgatagtttggtttttaagactgccttaagtgttaatctcttcattaagacacatgaacttacactgttcacacatttcaatttattagttactgctggaaatgctgtctccacttactcgatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
THUMP

Protein Analysis

371

Amino Acids

41.75

Weight (kDa)

5.54

Isoelectric Point (pI)

47.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12410
fragaria_vesca FvH4_3g28330 FvH4_3g28330
malus_domestica MD03G1170300.v1.1 MD11G1187800.v1.1
prunus_persica Prupe.4G256800_v2.0.a1
pyrus_communis pycom03g12680 pycom11g16450
rosa_chinensis RchiOBHm_Chr5g0051211
rosa_laevigata RLG00000034763
rosa_multiflora Rmu_sc0002385.1_g000021 Rmu_sc0042180.1_g000001
rosa_roxburghii Rroxscaffold_1G00029150
rosa_rugosa Rorug05G0266700
rosa_samantha Rh5AG339000 Rh5BG348900 Rh5CG375900 Rh5DG361800
rosa_wichuraiana Rw5G032030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 253
AciI CCGC 2 cut(s) 153, 745
AclI AACGTT 1 cut(s) 189
AclWI GGATC 3 cut(s) 607, 620, 755
AcuI CTGAAG 1 cut(s) 582
AfaI GTAC 2 cut(s) 219, 783
AfiI CCNNNNNNNGG 1 cut(s) 124
AflII CTTAAG 2 cut(s) 838, 1015
AflIII ACRYGT 1 cut(s) 822
AgsI TTSAA 4 cut(s) 209, 368, 740, 1069
AjnI CCWGG 2 cut(s) 165, 763
AluBI AGCT 4 cut(s) 182, 214, 560, 664
AluI AGCT 4 cut(s) 182, 214, 560, 664
Alw21I GWGCWC 1 cut(s) 666
Alw26I GTCTC 3 cut(s) 443, 949, 1102
AlwI GGATC 3 cut(s) 607, 620, 755
Ama87I CYCGRG 2 cut(s) 118, 461
AoxI GGCC 2 cut(s) 168, 766
ApeKI GCWGC 2 cut(s) 803, 806
ArsI GACNNNNNNTTYG 2 cut(s) 188, 220
Asp700I GAANNNNTTC 1 cut(s) 598
AspLEI GCGC 1 cut(s) 696
AspS9I GGNCC 2 cut(s) 30, 767
AsuC2I CCSGG 3 cut(s) 119, 120, 617
AsuHPI GGTGA 2 cut(s) 100, 964
AvaI CYCGRG 2 cut(s) 118, 461
AvaII GGWCC 1 cut(s) 30
BamHI GGATCC 1 cut(s) 612
BanI GGYRCC 1 cut(s) 253
BanII GRGCYC 1 cut(s) 666
BarI GAAGNNNNNNTAC 2 cut(s) 201, 233
BbsI GAAGAC 2 cut(s) 375, 724
Bbv12I GWGCWC 1 cut(s) 666
BbvCI CCTCAGC 1 cut(s) 34
BbvI GCAGC 2 cut(s) 790, 793
BccI CCATC 2 cut(s) 143, 749
BciT130I CCWGG 2 cut(s) 167, 765
BciVI GTATCC 1 cut(s) 117
BcnI CCSGG 3 cut(s) 119, 120, 617
BcoDI GTCTC 3 cut(s) 443, 949, 1102
BfaI CTAG 2 cut(s) 306, 590
BfoI RGCGCY 1 cut(s) 697
BfrI CTTAAG 2 cut(s) 838, 1015
BfuI GTATCC 1 cut(s) 117
BglII AGATCT 1 cut(s) 457
BisI GCNGC 3 cut(s) 154, 804, 807
BlsI GCNGC 3 cut(s) 155, 805, 808
Bme1390I CCNGG 5 cut(s) 119, 120, 167, 617, 765
Bme18I GGWCC 1 cut(s) 30
BmeT110I CYCGRG 2 cut(s) 118, 461
BmgT120I GGNCC 2 cut(s) 30, 767
BmiI GGNNCC 4 cut(s) 255, 360, 614, 769
BmrFI CCNGG 5 cut(s) 119, 120, 167, 617, 765
BmrI ACTGGG 1 cut(s) 252
BmuI ACTGGG 1 cut(s) 252
BoxI GACNNNNGTC 1 cut(s) 426
BpiI GAAGAC 2 cut(s) 375, 724
Bpu10I CCTNAGC 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 728
BpuMI CCSGG 3 cut(s) 119, 120, 617
BsaBI GATNNNNATC 1 cut(s) 759
BsaJI CCNNGG 4 cut(s) 118, 119, 927, 944
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse1I ACTGG 1 cut(s) 258
Bse8I GATNNNNATC 1 cut(s) 759
BseBI CCWGG 2 cut(s) 167, 765
BseDI CCNNGG 4 cut(s) 118, 119, 927, 944
BseJI GATNNNNATC 1 cut(s) 759
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 4 cut(s) 48, 240, 345, 950
BseNI ACTGG 1 cut(s) 258
BseRI GAGGAG 2 cut(s) 356, 896
BseXI GCAGC 2 cut(s) 790, 793
BshFI GGCC 2 cut(s) 170, 768
BshNI GGYRCC 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 666
BsiHKCI CYCGRG 2 cut(s) 118, 461
BsiSI CCGG 2 cut(s) 119, 617
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 3 cut(s) 443, 949, 1102
BsnI GGCC 2 cut(s) 170, 768
BsoBI CYCGRG 2 cut(s) 118, 461
Bsp1286I GDGCHC 1 cut(s) 666
Bsp1407I TGTACA 2 cut(s) 217, 781
Bsp143I GATC 3 cut(s) 457, 612, 760
BspACI CCGC 2 cut(s) 153, 745
BspANI GGCC 2 cut(s) 170, 768
BspCNI CTCAG 4 cut(s) 47, 241, 346, 949
BspHI TCATGA 3 cut(s) 175, 430, 988
BspLI GGNNCC 4 cut(s) 255, 360, 614, 769
BspPI GGATC 3 cut(s) 607, 620, 755
BspQI GCTCTTC 2 cut(s) 204, 558
BspT107I GGYRCC 1 cut(s) 253
BspTI CTTAAG 2 cut(s) 838, 1015
BsrGI TGTACA 2 cut(s) 217, 781
BsrI ACTGG 1 cut(s) 258
BssECI CCNNGG 4 cut(s) 118, 119, 927, 944
BssMI GATC 3 cut(s) 457, 612, 760
BssT1I CCWWGG 1 cut(s) 927
Bst2UI CCWGG 2 cut(s) 167, 765
Bst4CI ACNGT 2 cut(s) 425, 1056
Bst6I CTCTTC 8 cut(s) 204, 558, 624, 743, 873, 912, 988, 1034
BstAFI CTTAAG 2 cut(s) 838, 1015
BstAUI TGTACA 2 cut(s) 217, 781
BstDEI CTNAG 5 cut(s) 9, 34, 249, 354, 936
BstH2I RGCGCY 1 cut(s) 697
BstHHI GCGC 1 cut(s) 696
BstKTI GATC 3 cut(s) 460, 615, 763
BstMAI GTCTC 3 cut(s) 443, 949, 1102
BstMBI GATC 3 cut(s) 457, 612, 760
BstMWI GCNNNNNNNGC 3 cut(s) 162, 557, 1091
BstNI CCWGG 2 cut(s) 167, 765
BstNSI RCATGY 1 cut(s) 826
BstPAI GACNNNNGTC 1 cut(s) 426
BstSCI CCNGG 5 cut(s) 117, 118, 165, 615, 763
BstV1I GCAGC 2 cut(s) 790, 793
BstV2I GAAGAC 2 cut(s) 375, 724
BstX2I RGATCY 3 cut(s) 457, 612, 760
BstYI RGATCY 3 cut(s) 457, 612, 760
BsuI GTATCC 1 cut(s) 117
BsuRI GGCC 2 cut(s) 170, 768
BtsIMutI CAGTG 1 cut(s) 1052
CciI TCATGA 3 cut(s) 175, 430, 988
CfoI GCGC 1 cut(s) 696
Cfr13I GGNCC 2 cut(s) 30, 767
Cfr9I CCCGGG 1 cut(s) 118
Csp6I GTAC 2 cut(s) 218, 782
CviAII CATG 6 cut(s) 176, 431, 823, 864, 989, 1043
CviJI RGCY 8 cut(s) 38, 170, 182, 214, 560, 568, 664, 768
CviKI_1 RGCY 8 cut(s) 38, 170, 182, 214, 560, 568, 664, 768
CviQI GTAC 2 cut(s) 218, 782
DdeI CTNAG 5 cut(s) 9, 34, 249, 354, 936
DpnI GATC 3 cut(s) 459, 614, 762
DpnII GATC 3 cut(s) 457, 612, 760
DraI TTTAAA 1 cut(s) 270
Eam1104I CTCTTC 8 cut(s) 204, 558, 624, 743, 873, 912, 988, 1034
EarI CTCTTC 8 cut(s) 204, 558, 624, 743, 873, 912, 988, 1034
Ecl136II GAGCTC 1 cut(s) 664
Eco130I CCWWGG 1 cut(s) 927
Eco147I AGGCCT 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 666
Eco47I GGWCC 1 cut(s) 30
Eco53kI GAGCTC 1 cut(s) 664
Eco57I CTGAAG 1 cut(s) 582
Eco88I CYCGRG 2 cut(s) 118, 461
EcoICRI GAGCTC 1 cut(s) 664
EcoRII CCWGG 2 cut(s) 165, 763
EcoT14I CCWWGG 1 cut(s) 927
EcoT38I GRGCYC 1 cut(s) 666
ErhI CCWWGG 1 cut(s) 927
FaeI CATG 6 cut(s) 179, 434, 826, 867, 992, 1046
FalI AAGNNNNNCTT 4 cut(s) 680, 712, 998, 1030
FatI CATG 6 cut(s) 175, 430, 822, 863, 988, 1042
FauNDI CATATG 1 cut(s) 789
Fnu4HI GCNGC 3 cut(s) 154, 804, 807
FriOI GRGCYC 1 cut(s) 666
Fsp4HI GCNGC 3 cut(s) 154, 804, 807
FspBI CTAG 2 cut(s) 306, 590
GlaI GCGC 1 cut(s) 695
GluI GCNGC 3 cut(s) 154, 804, 807
HaeII RGCGCY 1 cut(s) 697
HaeIII GGCC 2 cut(s) 170, 768
HapII CCGG 2 cut(s) 119, 617
HhaI GCGC 1 cut(s) 696
Hin1II CATG 6 cut(s) 179, 434, 826, 867, 992, 1046
Hin6I GCGC 1 cut(s) 694
HinP1I GCGC 1 cut(s) 694
HincII GTYRAC 1 cut(s) 703
HindII GTYRAC 1 cut(s) 703
HinfI GANTC 8 cut(s) 61, 132, 197, 230, 299, 599, 710, 940
HpaII CCGG 2 cut(s) 119, 617
HphI GGTGA 2 cut(s) 100, 964
Hpy166II GTNNAC 4 cut(s) 263, 288, 703, 1059
Hpy188I TCNGA 6 cut(s) 250, 298, 403, 877, 939, 948
Hpy188III TCNNGA 6 cut(s) 176, 431, 461, 463, 891, 989
Hpy8I GTNNAC 4 cut(s) 263, 288, 703, 1059
HpyAV CCTTC 5 cut(s) 46, 80, 122, 220, 943
HpyCH4III ACNGT 2 cut(s) 425, 1056
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 3 cut(s) 551, 809, 914
HpyF10VI GCNNNNNNNGC 3 cut(s) 162, 557, 1091
HpyF3I CTNAG 5 cut(s) 9, 34, 249, 354, 936
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 6 cut(s) 179, 434, 826, 867, 992, 1046
HspAI GCGC 1 cut(s) 694
Kzo9I GATC 3 cut(s) 457, 612, 760
LguI GCTCTTC 2 cut(s) 204, 558
LmnI GCTCC 1 cut(s) 669
Lsp1109I GCAGC 2 cut(s) 790, 793
MaeI CTAG 2 cut(s) 306, 590
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 2 cut(s) 65, 1078
MalI GATC 3 cut(s) 459, 614, 762
MboI GATC 3 cut(s) 457, 612, 760
MflI RGATCY 3 cut(s) 457, 612, 760
MhlI GDGCHC 1 cut(s) 666
MluCI AATT 3 cut(s) 651, 897, 1069
MlyI GAGTC 4 cut(s) 55, 191, 719, 949
MroXI GAANNNNTTC 1 cut(s) 598
MseI TTAA 8 cut(s) 269, 675, 839, 900, 1005, 1016, 1023, 1035
MspCI CTTAAG 2 cut(s) 838, 1015
MspI CCGG 2 cut(s) 119, 617
MspR9I CCNGG 5 cut(s) 119, 120, 167, 617, 765
MvaI CCWGG 2 cut(s) 167, 765
MwoI GCNNNNNNNGC 3 cut(s) 162, 557, 1091
NciI CCSGG 3 cut(s) 119, 120, 617
NdeI CATATG 1 cut(s) 789
NdeII GATC 3 cut(s) 457, 612, 760
NlaIII CATG 6 cut(s) 179, 434, 826, 867, 992, 1046
NlaIV GGNNCC 4 cut(s) 255, 360, 614, 769
NspI RCATGY 1 cut(s) 826
PaeR7I CTCGAG 1 cut(s) 461
PagI TCATGA 3 cut(s) 175, 430, 988
PceI AGGCCT 1 cut(s) 170
PciI ACATGT 1 cut(s) 822
PciSI GCTCTTC 2 cut(s) 204, 558
PdmI GAANNNNTTC 1 cut(s) 598
PfeI GAWTC 4 cut(s) 132, 230, 299, 599
PfoI TCCNGGA 1 cut(s) 615
PkrI GCNGC 3 cut(s) 155, 805, 808
PleI GAGTC 4 cut(s) 55, 191, 718, 948
PpsI GAGTC 4 cut(s) 55, 191, 718, 948
PscI ACATGT 1 cut(s) 822
PshAI GACNNNNGTC 1 cut(s) 426
Psp124BI GAGCTC 1 cut(s) 666
Psp1406I AACGTT 1 cut(s) 189
Psp6I CCWGG 2 cut(s) 165, 763
PspGI CCWGG 2 cut(s) 165, 763
PspN4I GGNNCC 4 cut(s) 255, 360, 614, 769
PspPI GGNCC 2 cut(s) 30, 767
PsuI RGATCY 3 cut(s) 457, 612, 760
RsaI GTAC 2 cut(s) 219, 783
RsaNI GTAC 2 cut(s) 218, 782
SacI GAGCTC 1 cut(s) 666
SapI GCTCTTC 2 cut(s) 204, 558
SaqAI TTAA 8 cut(s) 269, 675, 839, 900, 1005, 1016, 1023, 1035
SatI GCNGC 3 cut(s) 154, 804, 807
Sau3AI GATC 3 cut(s) 457, 612, 760
Sau96I GGNCC 2 cut(s) 30, 767
SchI GAGTC 4 cut(s) 55, 191, 719, 949
ScrFI CCNGG 5 cut(s) 119, 120, 167, 617, 765
SduI GDGCHC 1 cut(s) 666
Sfr274I CTCGAG 1 cut(s) 461
SinI GGWCC 1 cut(s) 30
SlaI CTCGAG 1 cut(s) 461
SmaI CCCGGG 1 cut(s) 120
SmlI CTYRAG 4 cut(s) 461, 707, 838, 1015
SmoI CTYRAG 4 cut(s) 461, 707, 838, 1015
Sse9I AATT 3 cut(s) 651, 897, 1069
SseBI AGGCCT 1 cut(s) 170
SsiI CCGC 2 cut(s) 153, 745
SspI AATATT 1 cut(s) 920
SspMI CTAG 2 cut(s) 306, 590
SstI GAGCTC 1 cut(s) 666
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 5 cut(s) 117, 118, 165, 615, 763
StyI CCWWGG 1 cut(s) 927
TaaI ACNGT 2 cut(s) 425, 1056
TaiI ACGT 1 cut(s) 192
TaqI TCGA 4 cut(s) 462, 827, 855, 1109
TasI AATT 3 cut(s) 651, 897, 1069
TatI WGTACW 2 cut(s) 217, 781
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 4 cut(s) 132, 230, 299, 599
Tru1I TTAA 8 cut(s) 269, 675, 839, 900, 1005, 1016, 1023, 1035
Tru9I TTAA 8 cut(s) 269, 675, 839, 900, 1005, 1016, 1023, 1035
TscAI CASTG 1 cut(s) 1059
TseI GCWGC 2 cut(s) 803, 806
TspDTI ATGAA 5 cut(s) 192, 591, 955, 1021, 1059
TspMI CCCGGG 1 cut(s) 118
TspRI CASTG 1 cut(s) 1059
Vha464I CTTAAG 2 cut(s) 838, 1015
VpaK11BI GGWCC 1 cut(s) 30
XceI RCATGY 1 cut(s) 826
XhoI CTCGAG 1 cut(s) 461
XmaI CCCGGG 1 cut(s) 118
XmnI GAANNNNTTC 1 cut(s) 598
XspI CTAG 2 cut(s) 306, 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.