MD03G1170300.v1.1

THUMP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0012337
Physical Location & Seq
Reverse (-)
23088840 .. 23093052
4213 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1170300.v1.1.491

Sequence Viewer

Length: 1197 bp
ATGGCGACGGACAACAAATCCACAAAGTCCAAGAAGGGGAAGCAGCGCTATCTCCCTTACAACAAAGCGGTGAAGAAGAAAGGCGCGTACCCATTACACCCAGGGGTGGAAGGATTCTTCATCACTTGCGATGGCGGAAGGGAACGCCAAGCTTCTCAGGAGGCCATTAATGTTATTGACTCTTTTTATGAAGAGCTAGTCAGTGGAAAGGATTCGGGTTTAAACCTTTCTGAGGCACCCTCTAAACCTTCAAATAAGAAAATAGTGTTCTCGTATTCTGATTCTTCCAGTAGTGAGGGTGATGATGATGATGATGAAAAGAAACAAGAAGGAGATGAAAAGAAACAAGGAGAGGACAAGAAACAAGAAGGAGAGGACAAGGAAGCAGAAGAAGAGGGTGAAGTGGGTGAAGAGAGTAAAGGTGATTCTCGTAGTGATGATGCCAGTCATAATAATGCAACAAGTGAGAAATCAGAACACCAGAAGAAAAATGACGCATGTGACGAAAATAAAACTGGGGAAAACACTGATGACAAGAAAGAGGATAATTTAAATAAGGAAATTTGTGCAAATGAAGCTGAGGAGCCACCAGCAAAGAAACAATGTCTTGGAACAGATTCATCAAAATGTACTATCCCATACAAAGTGGAAGAGAAGTCCATTGATAAGCTAATTGAAGCCGAGCTTCAAGAACTGGGAGATAAGAACAAGAGACGCTTTTTCACCCTTGAATCGGGTTGCAATGGTGTTGTCTTTGTTCAAATGCGGAAGAGAGAGGGAGATCCTAGCCCTAGCGCAATTGTGCAGCATATGATGACATCTGCTGCTGCAACGAAGAAACACATGTCAAGGTTTATCCTAAGAGTATTACCCATTGAAGTAGCATGCTATTCTTCAGAAGAGGAAATTTCAAGAGCAATCAAACCACTTCTTGAACAGCACTTTCCAGTGGAAACTCAGAATCCTCGGAAGTTTGCAGTCCTGTATGAAGCCCGTGCAAACACCGGTATTGACAGGATGAAAATCATAAATGCAGTGGCAAAATCTGTGCCTGCACCGCACAAAGTTGACCTCAACAATCCTGATAAGACCATTGTTGTTGAAATTTGCAGGACTATTTGCTTGATCGGTATTGTTGACAAGTACAAGCAGTTGGCCAAGTACAATTTGAGGCAGCTCACATCATCAAAGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
THUMP

Protein Analysis

399

Amino Acids

44.39

Weight (kDa)

5.65

Isoelectric Point (pI)

54.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
THUMP PF02926 297 - 379 1.3e-16 THUMP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12410
fragaria_vesca FvH4_3g28330 FvH4_3g28330
malus_domestica MD03G1170300.v1.1 MD11G1187800.v1.1
prunus_persica Prupe.4G256800_v2.0.a1
pyrus_communis pycom03g12680 pycom11g16450
rosa_chinensis RchiOBHm_Chr5g0051211
rosa_laevigata RLG00000034763
rosa_multiflora Rmu_sc0002385.1_g000021 Rmu_sc0042180.1_g000001
rosa_roxburghii Rroxscaffold_1G00029150
rosa_rugosa Rorug05G0266700
rosa_samantha Rh5AG339000 Rh5BG348900 Rh5CG375900 Rh5DG361800
rosa_wichuraiana Rw5G032030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 235
AccII CGCG 1 cut(s) 86
AciI CCGC 4 cut(s) 68, 135, 766, 1058
AclWI GGATC 1 cut(s) 776
AcoI YGGCCR 1 cut(s) 1155
AcsI RAATTY 3 cut(s) 561, 906, 1104
AcuI CTGAAG 1 cut(s) 879
AfaI GTAC 4 cut(s) 89, 631, 1145, 1163
AfeI AGCGCT 1 cut(s) 47
AfiI CCNNNNNNNGG 4 cut(s) 36, 106, 232, 733
AflIII ACRYGT 1 cut(s) 843
AgeI ACCGGT 1 cut(s) 1004
AgsI TTSAA 9 cut(s) 252, 677, 689, 731, 761, 878, 912, 935, 1103
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 6 cut(s) 152, 196, 578, 670, 685, 1177
AluI AGCT 6 cut(s) 152, 196, 578, 670, 685, 1177
Alw26I GTCTC 1 cut(s) 706
AlwI GGATC 1 cut(s) 776
Aor51HI AGCGCT 1 cut(s) 47
AoxI GGCC 2 cut(s) 162, 1155
ApeKI GCWGC 5 cut(s) 43, 805, 824, 827, 1174
ApoI RAATTY 3 cut(s) 561, 906, 1104
AseI ATTAAT 1 cut(s) 168
AsiGI ACCGGT 1 cut(s) 1004
Asp700I GAANNNNTTC 2 cut(s) 211, 616
AspLEI GCGC 3 cut(s) 48, 86, 797
AsuHPI GGTGA 6 cut(s) 82, 311, 410, 419, 434, 715
BalI TGGCCA 1 cut(s) 1157
BanI GGYRCC 1 cut(s) 235
BbvCI CCTCAGC 1 cut(s) 579
BbvI GCAGC 5 cut(s) 55, 811, 814, 817, 1186
BccI CCATC 1 cut(s) 125
BciT130I CCWGG 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 706
BfaI CTAG 3 cut(s) 197, 786, 792
BfoI RGCGCY 1 cut(s) 49
BisI GCNGC 5 cut(s) 44, 806, 825, 828, 1175
BlsI GCNGC 5 cut(s) 45, 807, 826, 829, 1176
Bme1390I CCNGG 1 cut(s) 102
BmiI GGNNCC 2 cut(s) 237, 585
BmrFI CCNGG 1 cut(s) 102
BmrI ACTGGG 2 cut(s) 525, 704
BmsI GCATC 1 cut(s) 430
BmuI ACTGGG 2 cut(s) 525, 704
BplI GAGNNNNNCTC 2 cut(s) 224, 256
Bpu10I CCTNAGC 1 cut(s) 579
BsaBI GATNNNNATC 1 cut(s) 1022
BsaJI CCNNGG 3 cut(s) 100, 101, 965
BsaWI WCCGGW 1 cut(s) 1004
Bsc4I CCNNNNNNNGG 4 cut(s) 36, 106, 232, 733
Bse118I RCCGGY 1 cut(s) 1004
Bse1I ACTGG 5 cut(s) 288, 444, 520, 699, 947
Bse3DI GCAATG 1 cut(s) 748
Bse8I GATNNNNATC 1 cut(s) 1022
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 3 cut(s) 100, 101, 965
BseGI GGATG 1 cut(s) 1023
BseJI GATNNNNATC 1 cut(s) 1022
BseLI CCNNNNNNNGG 4 cut(s) 36, 106, 232, 733
BseMI GCAATG 1 cut(s) 748
BseMII CTCAG 4 cut(s) 170, 222, 570, 971
BseNI ACTGG 5 cut(s) 288, 444, 520, 699, 947
BseRI GAGGAG 1 cut(s) 596
BseXI GCAGC 5 cut(s) 55, 811, 814, 817, 1186
BsgI GTGCAG 2 cut(s) 824, 1038
Bsh1236I CGCG 1 cut(s) 86
BshFI GGCC 2 cut(s) 164, 1157
BshNI GGYRCC 1 cut(s) 235
BshTI ACCGGT 1 cut(s) 1004
BsiSI CCGG 1 cut(s) 1005
BslI CCNNNNNNNGG 4 cut(s) 36, 106, 232, 733
BsmAI GTCTC 1 cut(s) 706
BsmBI CGTCTC 1 cut(s) 706
BsnI GGCC 2 cut(s) 164, 1157
Bsp143I GATC 2 cut(s) 781, 1125
BspACI CCGC 4 cut(s) 68, 135, 766, 1058
BspANI GGCC 2 cut(s) 164, 1157
BspCNI CTCAG 4 cut(s) 169, 223, 571, 970
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 2 cut(s) 237, 585
BspPI GGATC 1 cut(s) 776
BspQI GCTCTTC 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 748
BsrFI RCCGGY 1 cut(s) 1004
BsrI ACTGG 5 cut(s) 288, 444, 520, 699, 947
BssAI RCCGGY 1 cut(s) 1004
BssECI CCNNGG 3 cut(s) 100, 101, 965
BssMI GATC 2 cut(s) 781, 1125
Bst2UI CCWGG 1 cut(s) 102
Bst6I CTCTTC 6 cut(s) 186, 387, 405, 645, 764, 894
BstC8I GCNNGC 2 cut(s) 886, 1053
BstDEI CTNAG 5 cut(s) 156, 231, 579, 860, 957
BstENI CCTNNNNNAGG 1 cut(s) 230
BstF5I GGATG 1 cut(s) 1023
BstFNI CGCG 1 cut(s) 86
BstH2I RGCGCY 1 cut(s) 49
BstHHI GCGC 3 cut(s) 48, 86, 797
BstKTI GATC 2 cut(s) 784, 1128
BstMAI GTCTC 1 cut(s) 706
BstMBI GATC 2 cut(s) 781, 1125
BstMWI GCNNNNNNNGC 2 cut(s) 575, 1057
BstNI CCWGG 1 cut(s) 102
BstNSI RCATGY 3 cut(s) 501, 847, 888
BstSCI CCNGG 1 cut(s) 100
BstUI CGCG 1 cut(s) 86
BstV1I GCAGC 5 cut(s) 55, 811, 814, 817, 1186
BstX2I RGATCY 1 cut(s) 781
BstYI RGATCY 1 cut(s) 781
BsuRI GGCC 2 cut(s) 164, 1157
BtgZI GCGATG 1 cut(s) 144
BtsCI GGATG 1 cut(s) 1023
BtsI GCAGTG 1 cut(s) 1041
BtsIMutI CAGTG 4 cut(s) 208, 525, 954, 1041
Cac8I GCNNGC 2 cut(s) 886, 1053
CfoI GCGC 3 cut(s) 48, 86, 797
Cfr10I RCCGGY 1 cut(s) 1004
CseI GACGC 2 cut(s) 503, 723
Csp6I GTAC 4 cut(s) 88, 630, 1144, 1162
CspAI ACCGGT 1 cut(s) 1004
CviAII CATG 3 cut(s) 498, 844, 885
CviQI GTAC 4 cut(s) 88, 630, 1144, 1162
DdeI CTNAG 5 cut(s) 156, 231, 579, 860, 957
DpnI GATC 2 cut(s) 783, 1127
DpnII GATC 2 cut(s) 781, 1125
DraI TTTAAA 2 cut(s) 222, 552
EaeI YGGCCR 1 cut(s) 1155
Eam1104I CTCTTC 6 cut(s) 186, 387, 405, 645, 764, 894
EarI CTCTTC 6 cut(s) 186, 387, 405, 645, 764, 894
EciI GGCGGA 1 cut(s) 150
Eco47III AGCGCT 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 879
EcoNI CCTNNNNNAGG 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 100
Esp3I CGTCTC 1 cut(s) 706
FaeI CATG 3 cut(s) 501, 847, 888
FalI AAGNNNNNCTT 4 cut(s) 669, 701, 701, 733
FatI CATG 3 cut(s) 497, 843, 884
FauNDI CATATG 1 cut(s) 810
Fnu4HI GCNGC 5 cut(s) 44, 806, 825, 828, 1175
FokI GGATG 1 cut(s) 1030
Fsp4HI GCNGC 5 cut(s) 44, 806, 825, 828, 1175
FspBI CTAG 3 cut(s) 197, 786, 792
GlaI GCGC 3 cut(s) 47, 85, 796
GluI GCNGC 5 cut(s) 44, 806, 825, 828, 1175
HaeII RGCGCY 1 cut(s) 49
HaeIII GGCC 2 cut(s) 164, 1157
HapII CCGG 1 cut(s) 1005
HgaI GACGC 2 cut(s) 503, 723
HhaI GCGC 3 cut(s) 48, 86, 797
Hin1II CATG 3 cut(s) 501, 847, 888
Hin6I GCGC 3 cut(s) 46, 84, 795
HinP1I GCGC 3 cut(s) 46, 84, 795
HincII GTYRAC 2 cut(s) 1069, 1138
HindII GTYRAC 2 cut(s) 1069, 1138
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 8 cut(s) 114, 179, 212, 281, 425, 617, 731, 961
HpaII CCGG 1 cut(s) 1005
HphI GGTGA 6 cut(s) 82, 311, 410, 419, 434, 715
Hpy166II GTNNAC 2 cut(s) 1069, 1138
Hpy188I TCNGA 6 cut(s) 232, 280, 475, 898, 960, 969
Hpy188III TCNNGA 5 cut(s) 158, 689, 912, 932, 1082
Hpy8I GTNNAC 2 cut(s) 1069, 1138
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 6 cut(s) 28, 104, 132, 258, 323, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 575, 1057
HpyF3I CTNAG 5 cut(s) 156, 231, 579, 860, 957
Hsp92II CATG 3 cut(s) 501, 847, 888
HspAI GCGC 3 cut(s) 46, 84, 795
Kzo9I GATC 2 cut(s) 781, 1125
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 1 cut(s) 583
Lsp1109I GCAGC 5 cut(s) 55, 811, 814, 817, 1186
LweI GCATC 1 cut(s) 430
MaeI CTAG 3 cut(s) 197, 786, 792
MaeIII GTNAC 1 cut(s) 500
MalI GATC 2 cut(s) 783, 1127
MboI GATC 2 cut(s) 781, 1125
MfeI CAATTG 1 cut(s) 798
MflI RGATCY 1 cut(s) 781
MlsI TGGCCA 1 cut(s) 1157
MluCI AATT 7 cut(s) 547, 561, 672, 798, 906, 1104, 1165
MluNI TGGCCA 1 cut(s) 1157
MlyI GAGTC 1 cut(s) 173
Mox20I TGGCCA 1 cut(s) 1157
MroXI GAANNNNTTC 2 cut(s) 211, 616
MscI TGGCCA 1 cut(s) 1157
MseI TTAA 3 cut(s) 168, 221, 551
MslI CAYNNNNRTG 2 cut(s) 453, 625
Msp20I TGGCCA 1 cut(s) 1157
MspI CCGG 1 cut(s) 1005
MspR9I CCNGG 1 cut(s) 102
MssI GTTTAAAC 1 cut(s) 222
MunI CAATTG 1 cut(s) 798
MvaI CCWGG 1 cut(s) 102
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 2 cut(s) 575, 1057
NdeI CATATG 1 cut(s) 810
NdeII GATC 2 cut(s) 781, 1125
NlaIII CATG 3 cut(s) 501, 847, 888
NlaIV GGNNCC 2 cut(s) 237, 585
NmeAIII GCCGAG 1 cut(s) 706
NmuCI GTSAC 1 cut(s) 500
NspI RCATGY 3 cut(s) 501, 847, 888
PaeI GCATGC 1 cut(s) 888
PasI CCCWGGG 1 cut(s) 101
PciI ACATGT 1 cut(s) 843
PciSI GCTCTTC 1 cut(s) 186
PcsI WCGNNNNNNNCGW 1 cut(s) 501
PdmI GAANNNNTTC 2 cut(s) 211, 616
PfeI GAWTC 7 cut(s) 114, 212, 281, 425, 617, 731, 961
PinAI ACCGGT 1 cut(s) 1004
PkrI GCNGC 5 cut(s) 45, 807, 826, 829, 1176
PleI GAGTC 1 cut(s) 173
PmeI GTTTAAAC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 173
PscI ACATGT 1 cut(s) 843
PshBI ATTAAT 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 237, 585
PsuI RGATCY 1 cut(s) 781
RsaI GTAC 4 cut(s) 89, 631, 1145, 1163
RsaNI GTAC 4 cut(s) 88, 630, 1144, 1162
RseI CAYNNNNRTG 2 cut(s) 453, 625
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 3 cut(s) 168, 221, 551
SatI GCNGC 5 cut(s) 44, 806, 825, 828, 1175
Sau3AI GATC 2 cut(s) 781, 1125
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 102
SfaNI GCATC 1 cut(s) 430
SmiI ATTTAAAT 1 cut(s) 552
SmiMI CAYNNNNRTG 2 cut(s) 453, 625
SphI GCATGC 1 cut(s) 888
Sse9I AATT 7 cut(s) 547, 561, 672, 798, 906, 1104, 1165
SsiI CCGC 4 cut(s) 68, 135, 766, 1058
SspMI CTAG 3 cut(s) 197, 786, 792
StyD4I CCNGG 1 cut(s) 100
SwaI ATTTAAAT 1 cut(s) 552
TasI AATT 7 cut(s) 547, 561, 672, 798, 906, 1104, 1165
TatI WGTACW 3 cut(s) 629, 1143, 1161
TfiI GAWTC 7 cut(s) 114, 212, 281, 425, 617, 731, 961
Tru1I TTAA 3 cut(s) 168, 221, 551
Tru9I TTAA 3 cut(s) 168, 221, 551
TscAI CASTG 4 cut(s) 208, 532, 954, 1041
TseFI GTSAC 1 cut(s) 500
TseI GCWGC 5 cut(s) 43, 805, 824, 827, 1174
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 8 cut(s) 109, 204, 330, 351, 588, 609, 1002, 1034
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 4 cut(s) 208, 532, 954, 1041
VspI ATTAAT 1 cut(s) 168
XagI CCTNNNNNAGG 1 cut(s) 230
XapI RAATTY 3 cut(s) 561, 906, 1104
XceI RCATGY 3 cut(s) 501, 847, 888
XmnI GAANNNNTTC 2 cut(s) 211, 616
XspI CTAG 3 cut(s) 197, 786, 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.