FvH4_3g28330

THUMP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012337
Physical Location & Seq
Reverse (-)
21301675 .. 21306939
5265 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g28330.t1

Sequence Viewer

Length: 1173 bp
ATGGCGACCGACAGTAAATCCAAGTCGTCCTCAGCACCAAAGTCCAAGAAGGGCAAGACTCGTTATCTTCCTCACAACAGGGCAGTGAAGAAGAAAGGGGCGTATCCGTTACACCCGGGGGTGCAAGGCTTCTTCATCACTTGCGATGGTGGCAGGGAGCGCCAAGCCTCTCATGAAGCTCTCAACGTTATCGACTCGTTCTTTGAAGAGCTTCTACATGGGAAGGATTCAGCGATAAATCTTTCTGAGGCACCCAGTAAACCTATCAATAAAAAAATTAAGTTCACGTACTCTGATTCTTCTAGTAGTGATGATGACGACGATGATGATAAGAAAGAGGAGGGGGAAACTGAGGAACCTGTTGAGGATAAAGGGATGGTCAATGAAGATATAAAATCTGATACTTGTGAAGGTGATGATGGTAGTCATGATAATCAAGTAAGTGAGACATCAGATCTTGAGAAAAAAGACAGTGCTCCCTGTGAAAATAAACCAGAGGAAGATACTAAAGTCGACATAGAGGGTAGTATAAGTAAAGAGATTTCTGCTAAAGAAGTTGAAGAGCCACCAGCAAAGAAACAATGTCTGGGAACAGATTCATCAAAAAGGATCCCGGATAAAGTAGAGGAGAAGTCCATTGATCGATTAATTGAAGATGAGCTCCAAGAACTTAAAGATAAGAACAAGAGGCGCTTTATCAACCTTGAGCCAGGTTGTAATGGTGTTGTCTTCGTTCAAATGCGGAAGAGAGACGGAGATCCTGGCCCCAAAGATATTGTACAGCATATGATGACATCTGCTGCTGCAACAAGGAAACACATGTCGAGGTTTATCTTAAGGGTATTACCTGTCGAAGTATCGTGCTATGCATCAGAAGAGGAGATTTCCAAATCAATTAAACCTCTTCTTGCACAATATTTTCCCTTGGAAACTGATAGTCCTCGGAAGTTTGCAGTACTCTATGGAGCACGGGCAAATACTGGTATTGACAGGATGAAAATCATAGATGCAGTGGCAAAGTCCGTGCCTCAACCTCACAAAGTTGACCTTAGCAACCCTGATTTGAATATTGTAGTTGAAATTTGCAAGACTATTTGCTTGATTGGTGTTGTTGAAAATTATAAGCAGTTGGCCAAGTACAACCTGAGGCAGCTCACATCACCGAAGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
THUMP

Protein Analysis

391

Amino Acids

43.44

Weight (kDa)

5.6

Isoelectric Point (pI)

48.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
THUMP PF02926 289 - 371 7.9e-16 THUMP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12410
fragaria_vesca FvH4_3g28330 FvH4_3g28330
malus_domestica MD03G1170300.v1.1 MD11G1187800.v1.1
prunus_persica Prupe.4G256800_v2.0.a1
pyrus_communis pycom03g12680 pycom11g16450
rosa_chinensis RchiOBHm_Chr5g0051211
rosa_laevigata RLG00000034763
rosa_multiflora Rmu_sc0002385.1_g000021 Rmu_sc0042180.1_g000001
rosa_roxburghii Rroxscaffold_1G00029150
rosa_rugosa Rorug05G0266700
rosa_samantha Rh5AG339000 Rh5BG348900 Rh5CG375900 Rh5DG361800
rosa_wichuraiana Rw5G032030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1122
AccB1I GGYRCC 1 cut(s) 250
AccI GTMKAC 1 cut(s) 513
AciI CCGC 1 cut(s) 742
AclI AACGTT 1 cut(s) 186
AclWI GGATC 3 cut(s) 604, 617, 752
AcoI YGGCCR 1 cut(s) 1131
AcsI RAATTY 1 cut(s) 1080
AfaI GTAC 4 cut(s) 290, 780, 957, 1139
AflII CTTAAG 1 cut(s) 835
AflIII ACRYGT 1 cut(s) 819
AgsI TTSAA 7 cut(s) 206, 560, 653, 737, 1066, 1079, 1115
AjnI CCWGG 2 cut(s) 709, 760
AluBI AGCT 4 cut(s) 179, 211, 661, 1153
AluI AGCT 4 cut(s) 179, 211, 661, 1153
Alw21I GWGCWC 3 cut(s) 478, 663, 970
Alw26I GTCTC 2 cut(s) 440, 744
AlwI GGATC 3 cut(s) 604, 617, 752
Ama87I CYCGRG 1 cut(s) 115
AoxI GGCC 2 cut(s) 763, 1131
ApeKI GCWGC 3 cut(s) 800, 803, 1150
ApoI RAATTY 1 cut(s) 1080
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AseI ATTAAT 1 cut(s) 647
Asp700I GAANNNNTTC 2 cut(s) 210, 595
AspLEI GCGC 2 cut(s) 162, 693
AspS9I GGNCC 1 cut(s) 764
AsuC2I CCSGG 3 cut(s) 116, 117, 614
AsuHPI GGTGA 2 cut(s) 425, 1152
AvaI CYCGRG 1 cut(s) 115
AxyI CCTNAGG 1 cut(s) 1145
BaeI ACNNNNGTAYC 2 cut(s) 495, 528
BalI TGGCCA 1 cut(s) 1133
BamHI GGATCC 1 cut(s) 609
BanI GGYRCC 1 cut(s) 250
BanII GRGCYC 1 cut(s) 663
BarI GAAGNNNNNNTAC 2 cut(s) 198, 230
BbsI GAAGAC 1 cut(s) 721
Bbv12I GWGCWC 3 cut(s) 478, 663, 970
BbvCI CCTCAGC 1 cut(s) 31
BbvI GCAGC 3 cut(s) 787, 790, 1162
BccI CCATC 3 cut(s) 140, 370, 413
BciT130I CCWGG 2 cut(s) 711, 762
BciVI GTATCC 1 cut(s) 114
BcnI CCSGG 3 cut(s) 116, 117, 614
BcoDI GTCTC 2 cut(s) 440, 744
BfaI CTAG 1 cut(s) 303
BfoI RGCGCY 2 cut(s) 163, 694
BfrI CTTAAG 1 cut(s) 835
BfuI GTATCC 1 cut(s) 114
BglII AGATCT 1 cut(s) 454
BisI GCNGC 3 cut(s) 801, 804, 1151
BlsI GCNGC 3 cut(s) 802, 805, 1152
BmcAI AGTACT 1 cut(s) 957
Bme1390I CCNGG 5 cut(s) 116, 117, 614, 711, 762
BmeT110I CYCGRG 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 764
BmiI GGNNCC 4 cut(s) 252, 357, 611, 766
BmrFI CCNGG 5 cut(s) 116, 117, 614, 711, 762
BmrI ACTGGG 1 cut(s) 249
BmsI GCATC 2 cut(s) 878, 997
BmuI ACTGGG 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 721
Bpu10I CCTNAGC 2 cut(s) 31, 1049
BpuEI CTTGAG 2 cut(s) 479, 725
BpuMI CCSGG 3 cut(s) 116, 117, 614
Bsa29I ATCGAT 1 cut(s) 643
BsaAI YACGTR 1 cut(s) 288
BsaBI GATNNNNATC 1 cut(s) 998
BsaJI CCNNGG 4 cut(s) 115, 116, 924, 941
Bse1I ACTGG 2 cut(s) 255, 985
Bse21I CCTNAGG 1 cut(s) 1145
Bse8I GATNNNNATC 1 cut(s) 998
BseBI CCWGG 2 cut(s) 711, 762
BseCI ATCGAT 1 cut(s) 643
BseDI CCNNGG 4 cut(s) 115, 116, 924, 941
BseGI GGATG 2 cut(s) 381, 999
BseJI GATNNNNATC 1 cut(s) 998
BseMII CTCAG 4 cut(s) 45, 237, 342, 1136
BseNI ACTGG 2 cut(s) 255, 985
BseRI GAGGAG 3 cut(s) 353, 641, 893
BseXI GCAGC 3 cut(s) 787, 790, 1162
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 765, 1133
BshNI GGYRCC 1 cut(s) 250
BshVI ATCGAT 1 cut(s) 643
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 3 cut(s) 478, 663, 970
BsiHKCI CYCGRG 1 cut(s) 115
BsiSI CCGG 2 cut(s) 116, 614
BsmAI GTCTC 2 cut(s) 440, 744
BsmBI CGTCTC 1 cut(s) 744
BsnI GGCC 2 cut(s) 765, 1133
BsoBI CYCGRG 1 cut(s) 115
Bsp1286I GDGCHC 3 cut(s) 478, 663, 970
Bsp1407I TGTACA 1 cut(s) 778
Bsp143I GATC 4 cut(s) 454, 609, 640, 757
BspACI CCGC 1 cut(s) 742
BspANI GGCC 2 cut(s) 765, 1133
BspCNI CTCAG 4 cut(s) 44, 238, 343, 1137
BspDI ATCGAT 1 cut(s) 643
BspHI TCATGA 2 cut(s) 172, 427
BspLI GGNNCC 4 cut(s) 252, 357, 611, 766
BspPI GGATC 3 cut(s) 604, 617, 752
BspQI GCTCTTC 2 cut(s) 201, 555
BspT107I GGYRCC 1 cut(s) 250
BspTI CTTAAG 1 cut(s) 835
BsrGI TGTACA 1 cut(s) 778
BsrI ACTGG 2 cut(s) 255, 985
BssECI CCNNGG 4 cut(s) 115, 116, 924, 941
BssMI GATC 4 cut(s) 454, 609, 640, 757
BssT1I CCWWGG 1 cut(s) 924
Bst2UI CCWGG 2 cut(s) 711, 762
Bst4CI ACNGT 2 cut(s) 14, 473
Bst6I CTCTTC 5 cut(s) 201, 555, 740, 870, 909
BstAFI CTTAAG 1 cut(s) 835
BstAUI TGTACA 1 cut(s) 778
BstBAI YACGTR 1 cut(s) 288
BstDEI CTNAG 5 cut(s) 31, 246, 351, 1049, 1145
BstF5I GGATG 2 cut(s) 381, 999
BstH2I RGCGCY 2 cut(s) 163, 694
BstHHI GCGC 2 cut(s) 162, 693
BstKTI GATC 4 cut(s) 457, 612, 643, 760
BstMAI GTCTC 2 cut(s) 440, 744
BstMBI GATC 4 cut(s) 454, 609, 640, 757
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 150, 159
BstNI CCWGG 2 cut(s) 711, 762
BstNSI RCATGY 1 cut(s) 823
BstSCI CCNGG 5 cut(s) 114, 115, 612, 709, 760
BstV1I GCAGC 3 cut(s) 787, 790, 1162
BstV2I GAAGAC 1 cut(s) 721
BstX2I RGATCY 3 cut(s) 454, 609, 757
BstYI RGATCY 3 cut(s) 454, 609, 757
Bsu15I ATCGAT 1 cut(s) 643
Bsu36I CCTNAGG 1 cut(s) 1145
BsuI GTATCC 1 cut(s) 114
BsuRI GGCC 2 cut(s) 765, 1133
BsuTUI ATCGAT 1 cut(s) 643
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 2 cut(s) 381, 999
BtsI GCAGTG 2 cut(s) 90, 1017
BtsIMutI CAGTG 3 cut(s) 90, 478, 1017
CciI TCATGA 2 cut(s) 172, 427
CfoI GCGC 2 cut(s) 162, 693
Cfr13I GGNCC 1 cut(s) 764
Cfr9I CCCGGG 1 cut(s) 115
ClaI ATCGAT 1 cut(s) 643
Csp6I GTAC 4 cut(s) 289, 779, 956, 1138
CviAII CATG 4 cut(s) 173, 218, 428, 820
CviQI GTAC 4 cut(s) 289, 779, 956, 1138
DdeI CTNAG 5 cut(s) 31, 246, 351, 1049, 1145
DpnI GATC 4 cut(s) 456, 611, 642, 759
DpnII GATC 4 cut(s) 454, 609, 640, 757
EaeI YGGCCR 1 cut(s) 1131
Eam1104I CTCTTC 5 cut(s) 201, 555, 740, 870, 909
EarI CTCTTC 5 cut(s) 201, 555, 740, 870, 909
Ecl136II GAGCTC 1 cut(s) 661
Eco130I CCWWGG 1 cut(s) 924
Eco24I GRGCYC 1 cut(s) 663
Eco53kI GAGCTC 1 cut(s) 661
Eco81I CCTNAGG 1 cut(s) 1145
Eco88I CYCGRG 1 cut(s) 115
EcoICRI GAGCTC 1 cut(s) 661
EcoRII CCWGG 2 cut(s) 709, 760
EcoT14I CCWWGG 1 cut(s) 924
EcoT22I ATGCAT 1 cut(s) 871
EcoT38I GRGCYC 1 cut(s) 663
ErhI CCWWGG 1 cut(s) 924
Esp3I CGTCTC 1 cut(s) 744
FaeI CATG 4 cut(s) 176, 221, 431, 823
FalI AAGNNNNNCTT 4 cut(s) 677, 709, 1032, 1064
FatI CATG 4 cut(s) 172, 217, 427, 819
FauNDI CATATG 1 cut(s) 786
FblI GTMKAC 1 cut(s) 513
Fnu4HI GCNGC 3 cut(s) 801, 804, 1151
FokI GGATG 2 cut(s) 388, 1006
FriOI GRGCYC 1 cut(s) 663
Fsp4HI GCNGC 3 cut(s) 801, 804, 1151
FspBI CTAG 1 cut(s) 303
GlaI GCGC 2 cut(s) 161, 692
GluI GCNGC 3 cut(s) 801, 804, 1151
HaeII RGCGCY 2 cut(s) 163, 694
HaeIII GGCC 2 cut(s) 765, 1133
HapII CCGG 2 cut(s) 116, 614
HhaI GCGC 2 cut(s) 162, 693
Hin1II CATG 4 cut(s) 176, 221, 431, 823
Hin6I GCGC 2 cut(s) 160, 691
HinP1I GCGC 2 cut(s) 160, 691
HincII GTYRAC 2 cut(s) 514, 1045
HindII GTYRAC 2 cut(s) 514, 1045
HinfI GANTC 5 cut(s) 58, 194, 227, 296, 596
HpaII CCGG 2 cut(s) 116, 614
HphI GGTGA 2 cut(s) 425, 1152
Hpy166II GTNNAC 4 cut(s) 260, 285, 514, 1045
Hpy188I TCNGA 6 cut(s) 247, 295, 400, 454, 874, 945
Hpy188III TCNNGA 3 cut(s) 173, 428, 458
Hpy8I GTNNAC 4 cut(s) 260, 285, 514, 1045
Hpy99I CGWCG 1 cut(s) 323
HpyAV CCTTC 3 cut(s) 43, 217, 404
HpyCH4III ACNGT 2 cut(s) 14, 473
HpyCH4IV ACGT 2 cut(s) 186, 287
HpyCH4V TGCA 7 cut(s) 124, 806, 869, 911, 953, 1010, 1086
HpyF10VI GCNNNNNNNGC 2 cut(s) 150, 159
HpyF3I CTNAG 5 cut(s) 31, 246, 351, 1049, 1145
HpySE526I ACGT 2 cut(s) 186, 287
Hsp92II CATG 4 cut(s) 176, 221, 431, 823
HspAI GCGC 2 cut(s) 160, 691
Kzo9I GATC 4 cut(s) 454, 609, 640, 757
LguI GCTCTTC 2 cut(s) 201, 555
LmnI GCTCC 4 cut(s) 157, 481, 666, 965
Lsp1109I GCAGC 3 cut(s) 787, 790, 1162
LweI GCATC 2 cut(s) 878, 997
MaeI CTAG 1 cut(s) 303
MaeII ACGT 2 cut(s) 186, 287
MaeIII GTNAC 1 cut(s) 108
MalI GATC 4 cut(s) 456, 611, 642, 759
MboI GATC 4 cut(s) 454, 609, 640, 757
MflI RGATCY 3 cut(s) 454, 609, 757
MhlI GDGCHC 3 cut(s) 478, 663, 970
MlsI TGGCCA 1 cut(s) 1133
MluCI AATT 5 cut(s) 276, 648, 894, 1080, 1117
MluNI TGGCCA 1 cut(s) 1133
MlyI GAGTC 2 cut(s) 52, 188
Mox20I TGGCCA 1 cut(s) 1133
Mph1103I ATGCAT 1 cut(s) 871
MroXI GAANNNNTTC 2 cut(s) 210, 595
MscI TGGCCA 1 cut(s) 1133
MseI TTAA 5 cut(s) 279, 647, 672, 836, 897
Msp20I TGGCCA 1 cut(s) 1133
MspCI CTTAAG 1 cut(s) 835
MspI CCGG 2 cut(s) 116, 614
MspR9I CCNGG 5 cut(s) 116, 117, 614, 711, 762
MvaI CCWGG 2 cut(s) 711, 762
MwoI GCNNNNNNNGC 2 cut(s) 150, 159
NciI CCSGG 3 cut(s) 116, 117, 614
NdeI CATATG 1 cut(s) 786
NdeII GATC 4 cut(s) 454, 609, 640, 757
NlaIII CATG 4 cut(s) 176, 221, 431, 823
NlaIV GGNNCC 4 cut(s) 252, 357, 611, 766
NsiI ATGCAT 1 cut(s) 871
NspI RCATGY 1 cut(s) 823
PagI TCATGA 2 cut(s) 172, 427
PciI ACATGT 1 cut(s) 819
PciSI GCTCTTC 2 cut(s) 201, 555
PdmI GAANNNNTTC 2 cut(s) 210, 595
PfeI GAWTC 3 cut(s) 227, 296, 596
PfoI TCCNGGA 1 cut(s) 612
PkrI GCNGC 3 cut(s) 802, 805, 1152
PleI GAGTC 2 cut(s) 52, 188
PpsI GAGTC 2 cut(s) 52, 188
Ppu21I YACGTR 1 cut(s) 288
PscI ACATGT 1 cut(s) 819
PshBI ATTAAT 1 cut(s) 647
PsiI TTATAA 1 cut(s) 1122
Psp124BI GAGCTC 1 cut(s) 663
Psp1406I AACGTT 1 cut(s) 186
Psp6I CCWGG 2 cut(s) 709, 760
PspGI CCWGG 2 cut(s) 709, 760
PspN4I GGNNCC 4 cut(s) 252, 357, 611, 766
PspPI GGNCC 1 cut(s) 764
PsuI RGATCY 3 cut(s) 454, 609, 757
RsaI GTAC 4 cut(s) 290, 780, 957, 1139
RsaNI GTAC 4 cut(s) 289, 779, 956, 1138
SacI GAGCTC 1 cut(s) 663
SalI GTCGAC 1 cut(s) 512
SapI GCTCTTC 2 cut(s) 201, 555
SaqAI TTAA 5 cut(s) 279, 647, 672, 836, 897
SatI GCNGC 3 cut(s) 801, 804, 1151
Sau3AI GATC 4 cut(s) 454, 609, 640, 757
Sau96I GGNCC 1 cut(s) 764
ScaI AGTACT 1 cut(s) 957
SchI GAGTC 2 cut(s) 52, 188
ScrFI CCNGG 5 cut(s) 116, 117, 614, 711, 762
SduI GDGCHC 3 cut(s) 478, 663, 970
SfaNI GCATC 2 cut(s) 878, 997
SmaI CCCGGG 1 cut(s) 117
SmlI CTYRAG 3 cut(s) 458, 704, 835
SmoI CTYRAG 3 cut(s) 458, 704, 835
Sse9I AATT 5 cut(s) 276, 648, 894, 1080, 1117
SsiI CCGC 1 cut(s) 742
SspI AATATT 2 cut(s) 917, 1069
SspMI CTAG 1 cut(s) 303
SstI GAGCTC 1 cut(s) 663
StyD4I CCNGG 5 cut(s) 114, 115, 612, 709, 760
StyI CCWWGG 1 cut(s) 924
TaaI ACNGT 2 cut(s) 14, 473
TaiI ACGT 2 cut(s) 189, 290
TaqI TCGA 5 cut(s) 192, 513, 643, 824, 852
TaqII GACCGA 1 cut(s) 23
TasI AATT 5 cut(s) 276, 648, 894, 1080, 1117
TatI WGTACW 3 cut(s) 778, 955, 1137
TfiI GAWTC 3 cut(s) 227, 296, 596
Tru1I TTAA 5 cut(s) 279, 647, 672, 836, 897
Tru9I TTAA 5 cut(s) 279, 647, 672, 836, 897
TscAI CASTG 3 cut(s) 90, 478, 1017
TseI GCWGC 3 cut(s) 800, 803, 1150
TspDTI ATGAA 5 cut(s) 124, 189, 399, 588, 1010
TspGWI ACGGA 3 cut(s) 96, 768, 1012
TspMI CCCGGG 1 cut(s) 115
TspRI CASTG 3 cut(s) 90, 478, 1017
Vha464I CTTAAG 1 cut(s) 835
VspI ATTAAT 1 cut(s) 647
XapI RAATTY 1 cut(s) 1080
XceI RCATGY 1 cut(s) 823
XmaI CCCGGG 1 cut(s) 115
XmiI GTMKAC 1 cut(s) 513
XmnI GAANNNNTTC 2 cut(s) 210, 595
XspI CTAG 1 cut(s) 303
ZrmI AGTACT 1 cut(s) 957
Zsp2I ATGCAT 1 cut(s) 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.