Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011761

Physical Location & Seq

Genomic Coordinates Forward (+)

4196256 .. 4197940

Gene Structure 1685 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G13180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGATAATGTCAAACTTGTTAAGAATGGTGTTTTGAGATTGCCACCTGGATTCAGATTCCATCCTACTGATGAAGAACTTGTGGTTCAATACCTTAAGAGGAAAGTTTGTTCTTCTCCTTTGCCAGCTTCAATCATCCCTGAGTTTGATGTTTGCAGAGCTGATCCTTGGGATTTACCTGGCAATTTGGAGAAAGAGAGGTACTTCTTTAGCACAAGGGAAGCTAAATACCCAAATGGGAACCGGTCTAACCGGGCAACTGGGTCTGGTTATTGGAAAGCTACCGGTATTGATAAACGGGTTGTGACCTCTAGAGGAAATCAAATCGTTGGTTTGAAGAAAACTCTTGTCTTCTACAAAGGCAAACCACCTCATGGCTCAAGAACCGATTGGATCATGCACGAATATCGCCTCTCTTCTTCTCCTCCGAGTTCTATGGGTCCCACTCAGAACTGGGTACTCTGTCGTATCTTCTTGAAGAAAAGAGCCGGTAACAAGAACGACGACGACGACGGAGATAGCCGTAATCTTAGACATAATAATAATAACAATTCGAGTGACCAAATTGAGATAATTACAACAGACCAAACAGATGATAAAACAAAACCAATCTTCTTTGATTTCATGAGAAAAGAAAGAACAACAGATTTGAACCTTTTGCCGAGCTCTCCTTCTTCCGATCATGCTTCAAGTGGAGTCACGACGGAGATCTTCTCTTCTTCCGATGAAGAGACCAGTAGTTGCAATAGTTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010087 GO:0010089 GO:0010150 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0097305 GO:0099402 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

252

Amino Acids

28.57

Weight (kDa)

8.97

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	15 - 138	2.7e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13180
fragaria_vesca	FvH4_4g23130
malus_domestica	MD13G1125000.v1.1 MD16G1125800.v1.1
prunus_persica	Prupe.1G220400_v2.0.a1
pyrus_communis	pycom13g10900 pycom16g10690
rosa_chinensis	RchiOBHm_Chr4g0429461
rosa_laevigata	RLG00000007069
rosa_multiflora	Rmu_sc0003708.1_g000017 Rmu_sc0004825.1_g000003 Rmu_sc0004825.1_g000004
rosa_roxburghii	Rroxscaffold_5G00371160
rosa_rugosa	Rorug04G0236200
rosa_samantha	Rh4AG291800 Rh4BG297600 Rh4CG313100 Rh4DG294700
rosa_wichuraiana	Rw4G025270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	374
AclWI	GGATC	2 cut(s)	158, 401
AfaI	GTAC	2 cut(s)	203, 459
AfiI	CCNNNNNNNGG	1 cut(s)	374
AflII	CTTAAG	1 cut(s)	95
AgeI	ACCGGT	2 cut(s)	243, 284
AgsI	TTSAA	6 cut(s)	89, 132, 337, 478, 652, 690
AjnI	CCWGG	2 cut(s)	46, 178
AloI	GAACNNNNNNTCC	2 cut(s)	94, 126
AluBI	AGCT	5 cut(s)	128, 161, 224, 281, 666
AluI	AGCT	5 cut(s)	128, 161, 224, 281, 666
Alw21I	GWGCWC	1 cut(s)	668
Alw26I	GTCTC	1 cut(s)	725
AlwI	GGATC	2 cut(s)	158, 401
AsiGI	ACCGGT	2 cut(s)	243, 284
AspS9I	GGNCC	1 cut(s)	440
AsuC2I	CCSGG	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	668
BbsI	GAAGAC	1 cut(s)	343
Bbv12I	GWGCWC	1 cut(s)	668
BccI	CCATC	1 cut(s)	69
BceAI	ACGGC	1 cut(s)	507
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciT130I	CCWGG	2 cut(s)	48, 180
BcnI	CCSGG	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	725
BfaI	CTAG	1 cut(s)	312
BfrI	CTTAAG	1 cut(s)	95
BglII	AGATCT	1 cut(s)	708
Bme1390I	CCNGG	3 cut(s)	48, 180, 254
Bme18I	GGWCC	1 cut(s)	440
BmgT120I	GGNCC	1 cut(s)	440
BmiI	GGNNCC	3 cut(s)	242, 441, 442
BmrFI	CCNGG	3 cut(s)	48, 180, 254
BmrI	ACTGGG	2 cut(s)	270, 463
BmuI	ACTGGG	2 cut(s)	270, 463
BpiI	GAAGAC	1 cut(s)	343
BplI	GAGNNNNNCTC	2 cut(s)	698, 730
BpuEI	CTTGAG	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	254
BsaI	GGTCTC	1 cut(s)	725
BsaJI	CCNNGG	1 cut(s)	167
BsaWI	WCCGGW	2 cut(s)	243, 284
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse118I	RCCGGY	3 cut(s)	243, 284, 488
Bse1I	ACTGG	3 cut(s)	265, 458, 735
BseBI	CCWGG	2 cut(s)	48, 180
BseDI	CCNNGG	1 cut(s)	167
BseGI	GGATG	2 cut(s)	61, 135
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMII	CTCAG	2 cut(s)	132, 461
BseNI	ACTGG	3 cut(s)	265, 458, 735
BseRI	GAGGAG	1 cut(s)	414
BshTI	ACCGGT	2 cut(s)	243, 284
BsiHKAI	GWGCWC	1 cut(s)	668
BsiSI	CCGG	4 cut(s)	244, 253, 285, 489
BslFI	GGGAC	1 cut(s)	426
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	1 cut(s)	725
BsmFI	GGGAC	1 cut(s)	426
Bso31I	GGTCTC	1 cut(s)	725
Bsp1286I	GDGCHC	1 cut(s)	668
Bsp143I	GATC	4 cut(s)	163, 393, 679, 708
BspCNI	CTCAG	2 cut(s)	133, 460
BspHI	TCATGA	1 cut(s)	624
BspLI	GGNNCC	3 cut(s)	242, 441, 442
BspPI	GGATC	2 cut(s)	158, 401
BspTI	CTTAAG	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	725
BsrFI	RCCGGY	3 cut(s)	243, 284, 488
BsrI	ACTGG	3 cut(s)	265, 458, 735
BssAI	RCCGGY	3 cut(s)	243, 284, 488
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	4 cut(s)	163, 393, 679, 708
BssT1I	CCWWGG	1 cut(s)	167
Bst2UI	CCWGG	2 cut(s)	48, 180
Bst6I	CTCTTC	3 cut(s)	421, 721, 723
BstAFI	CTTAAG	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	3 cut(s)	141, 447, 530
BstF5I	GGATG	2 cut(s)	61, 135
BstKTI	GATC	4 cut(s)	166, 396, 682, 711
BstMAI	GTCTC	1 cut(s)	725
BstMBI	GATC	4 cut(s)	163, 393, 679, 708
BstNI	CCWGG	2 cut(s)	48, 180
BstSCI	CCNGG	3 cut(s)	46, 178, 252
BstV2I	GAAGAC	1 cut(s)	343
BstX2I	RGATCY	1 cut(s)	708
BstYI	RGATCY	1 cut(s)	708
BtsCI	GGATG	2 cut(s)	61, 135
Cac8I	GCNNGC	1 cut(s)	126
CciI	TCATGA	1 cut(s)	624
Cfr10I	RCCGGY	3 cut(s)	243, 284, 488
Cfr13I	GGNCC	1 cut(s)	440
Csp6I	GTAC	2 cut(s)	202, 458
CspAI	ACCGGT	2 cut(s)	243, 284
CviAII	CATG	4 cut(s)	374, 397, 625, 683
CviJI	RGCY	8 cut(s)	128, 161, 224, 281, 378, 488, 522, 666
CviKI_1	RGCY	8 cut(s)	128, 161, 224, 281, 378, 488, 522, 666
CviQI	GTAC	2 cut(s)	202, 458
DdeI	CTNAG	3 cut(s)	141, 447, 530
DpnI	GATC	4 cut(s)	165, 395, 681, 710
DpnII	GATC	4 cut(s)	163, 393, 679, 708
Eam1104I	CTCTTC	3 cut(s)	421, 721, 723
EarI	CTCTTC	3 cut(s)	421, 721, 723
Ecl136II	GAGCTC	1 cut(s)	666
Eco130I	CCWWGG	1 cut(s)	167
Eco24I	GRGCYC	1 cut(s)	668
Eco31I	GGTCTC	1 cut(s)	725
Eco47I	GGWCC	1 cut(s)	440
Eco53kI	GAGCTC	1 cut(s)	666
EcoICRI	GAGCTC	1 cut(s)	666
EcoO109I	RGGNCCY	1 cut(s)	440
EcoRII	CCWGG	2 cut(s)	46, 178
EcoT14I	CCWWGG	1 cut(s)	167
EcoT38I	GRGCYC	1 cut(s)	668
ErhI	CCWWGG	1 cut(s)	167
FaeI	CATG	4 cut(s)	377, 400, 628, 686
FaiI	YATR	6 cut(s)	375, 398, 437, 537, 626, 684
FaqI	GGGAC	1 cut(s)	426
FatI	CATG	4 cut(s)	373, 396, 624, 682
FokI	GGATG	2 cut(s)	48, 122
FriOI	GRGCYC	1 cut(s)	668
FspBI	CTAG	1 cut(s)	312
HapII	CCGG	4 cut(s)	244, 253, 285, 489
Hin1II	CATG	4 cut(s)	377, 400, 628, 686
HinfI	GANTC	3 cut(s)	51, 57, 696
HpaII	CCGG	4 cut(s)	244, 253, 285, 489
Hpy188I	TCNGA	6 cut(s)	56, 429, 450, 679, 724, 755
Hpy188III	TCNNGA	5 cut(s)	312, 381, 475, 625, 700
Hpy99I	CGWCG	5 cut(s)	506, 509, 512, 515, 706
HpyAV	CCTTC	1 cut(s)	681
HpyCH4V	TGCA	3 cut(s)	156, 400, 744
HpyF3I	CTNAG	3 cut(s)	141, 447, 530
Hsp92II	CATG	4 cut(s)	377, 400, 628, 686
KflI	GGGWCCC	1 cut(s)	440
Kzo9I	GATC	4 cut(s)	163, 393, 679, 708
MaeI	CTAG	1 cut(s)	312
MaeIII	GTNAC	4 cut(s)	304, 491, 557, 697
MalI	GATC	4 cut(s)	165, 395, 681, 710
MboI	GATC	4 cut(s)	163, 393, 679, 708
MflI	RGATCY	1 cut(s)	708
MhlI	GDGCHC	1 cut(s)	668
MluCI	AATT	4 cut(s)	184, 550, 564, 573
MlyI	GAGTC	1 cut(s)	705
MnlI	CCTC	7 cut(s)	93, 192, 308, 319, 381, 422, 435
MseI	TTAA	2 cut(s)	21, 96
MspCI	CTTAAG	1 cut(s)	95
MspI	CCGG	4 cut(s)	244, 253, 285, 489
MspR9I	CCNGG	3 cut(s)	48, 180, 254
MvaI	CCWGG	2 cut(s)	48, 180
NciI	CCSGG	1 cut(s)	254
NdeII	GATC	4 cut(s)	163, 393, 679, 708
NlaIII	CATG	4 cut(s)	377, 400, 628, 686
NlaIV	GGNNCC	3 cut(s)	242, 441, 442
NmeAIII	GCCGAG	1 cut(s)	687
NmuCI	GTSAC	3 cut(s)	304, 557, 697
PagI	TCATGA	1 cut(s)	624
PcsI	WCGNNNNNNNCGW	1 cut(s)	507
PfeI	GAWTC	2 cut(s)	51, 57
PflMI	CCANNNNNTGG	1 cut(s)	374
PinAI	ACCGGT	2 cut(s)	243, 284
PleI	GAGTC	1 cut(s)	704
PpsI	GAGTC	1 cut(s)	704
PpuMI	RGGWCCY	1 cut(s)	440
Psp124BI	GAGCTC	1 cut(s)	668
Psp5II	RGGWCCY	1 cut(s)	440
Psp6I	CCWGG	2 cut(s)	46, 178
PspGI	CCWGG	2 cut(s)	46, 178
PspN4I	GGNNCC	3 cut(s)	242, 441, 442
PspPI	GGNCC	1 cut(s)	440
PspPPI	RGGWCCY	1 cut(s)	440
PsuI	RGATCY	1 cut(s)	708
RsaI	GTAC	2 cut(s)	203, 459
RsaNI	GTAC	2 cut(s)	202, 458
SacI	GAGCTC	1 cut(s)	668
SaqAI	TTAA	2 cut(s)	21, 96
Sau3AI	GATC	4 cut(s)	163, 393, 679, 708
Sau96I	GGNCC	1 cut(s)	440
SchI	GAGTC	1 cut(s)	705
ScrFI	CCNGG	3 cut(s)	48, 180, 254
SduI	GDGCHC	1 cut(s)	668
SinI	GGWCC	1 cut(s)	440
SmlI	CTYRAG	2 cut(s)	95, 379
SmoI	CTYRAG	2 cut(s)	95, 379
Sse9I	AATT	4 cut(s)	184, 550, 564, 573
SspMI	CTAG	1 cut(s)	312
SstI	GAGCTC	1 cut(s)	668
StyD4I	CCNGG	3 cut(s)	46, 178, 252
StyI	CCWWGG	1 cut(s)	167
TaqI	TCGA	1 cut(s)	554
TasI	AATT	4 cut(s)	184, 550, 564, 573
TfiI	GAWTC	2 cut(s)	51, 57
Tru1I	TTAA	2 cut(s)	21, 96
Tru9I	TTAA	2 cut(s)	21, 96
TseFI	GTSAC	3 cut(s)	304, 557, 697
Tsp45I	GTSAC	3 cut(s)	304, 557, 697
TspDTI	ATGAA	3 cut(s)	87, 613, 741
TspGWI	ACGGA	2 cut(s)	528, 719
Van91I	CCANNNNNTGG	1 cut(s)	374
Vha464I	CTTAAG	1 cut(s)	95
VpaK11BI	GGWCC	1 cut(s)	440
XbaI	TCTAGA	1 cut(s)	311
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.