Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0011761

Physical Location & Seq

Genomic Coordinates Forward (+)

13253744 .. 13254754

Gene Structure 1011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007069

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGAGAAGCTCAGTTTTGTGAGGAATGGAGAGCTGAGATTGCCTCCTGGTTTTCGGTTCCATCCTACTGACGAAGAGCTTGTTCTTCAGTACTTGAAGCGCAAGGTCTACTCGTGTCCTTTGCCTGCTTCCATCATCCCTGAGGTTGAAGTCTGCAAGTCTGATCCTTGGGATTTGCCAGGTGATTTAGAGCAAGAGAGGTACTTCTTCAGCACTAGGGAGGCCAAGTACCCAAATGGGAACAGATCAAACAGAGCAACAGGTTCTGGGTATTGGAAGGCAACTGGTTTGGACAAACAAATTGTGGCTTCCAGGGGTAATCAAGTTGTTGGGATGAAGAAGACTCTGGTTTTTTACAGAGGAAAACCTCCACATGGGAGTAGGACCGATTGGATTATGCACGAGTATCGCCTCGTTTTAGCTGAAGATAATAAAAATAACTCCACCACCCAAAGCCCTGTTCCGGTGAACAATTGGGTTCTTTGCCGCATATTTTTGAAGAAAAGAGGCAGTGGTAAAAACGAGGAAGAACTAGTTCAAGTTGTGCAGGCCTGCAATGTTGACCGAGTGGCGAAAAATCCAAGGATTACTCGGCCTGTTTTCTACGATTTCATGACCAAGGACAGGGCCAATTTGAGCCTTGCGCCTTGTTCTTCATCCTCAGGTTCAAGTGGAGTCACAGATGTCGTTTCTACCGAGACAGAGGAGCACGAAGAGAGCAGTAGCTGCAATAGTCTTCCTTTTTTTAGAAGAAAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0097305 GO:0099402 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

254

Amino Acids

28.77

Weight (kDa)

9.08

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	15 - 138	1.8e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0011761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13180
fragaria_vesca	FvH4_4g23130
malus_domestica	MD13G1125000.v1.1 MD16G1125800.v1.1
prunus_persica	Prupe.1G220400_v2.0.a1
pyrus_communis	pycom13g10900 pycom16g10690
rosa_chinensis	RchiOBHm_Chr4g0429461
rosa_laevigata	RLG00000007069
rosa_multiflora	Rmu_sc0003708.1_g000017 Rmu_sc0004825.1_g000003 Rmu_sc0004825.1_g000004
rosa_roxburghii	Rroxscaffold_5G00371160
rosa_rugosa	Rorug04G0236200
rosa_samantha	Rh4AG291800 Rh4BG297600 Rh4CG313100 Rh4DG294700
rosa_wichuraiana	Rw4G025270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	108
AciI	CCGC	1 cut(s)	487
AclWI	GGATC	1 cut(s)	158
AcuI	CTGAAG	3 cut(s)	71, 193, 444
AfaI	GTAC	3 cut(s)	92, 203, 230
AfiI	CCNNNNNNNGG	3 cut(s)	374, 463, 624
AgsI	TTSAA	5 cut(s)	97, 149, 499, 539, 669
AhlI	ACTAGT	1 cut(s)	532
AjnI	CCWGG	3 cut(s)	46, 178, 311
AjuI	GAANNNNNNNTTGG	2 cut(s)	444, 476
AluBI	AGCT	5 cut(s)	10, 34, 79, 422, 726
AluI	AGCT	5 cut(s)	10, 34, 79, 422, 726
Alw21I	GWGCWC	1 cut(s)	711
Alw26I	GTCTC	1 cut(s)	692
AlwI	GGATC	1 cut(s)	158
AlwNI	CAGNNNCTG	2 cut(s)	266, 726
AoxI	GGCC	4 cut(s)	222, 549, 593, 627
ApeKI	GCWGC	1 cut(s)	726
Asp700I	GAANNNNTTC	1 cut(s)	534
AspLEI	GCGC	2 cut(s)	102, 646
AspS9I	GGNCC	2 cut(s)	384, 627
AsuHPI	GGTGA	2 cut(s)	194, 478
AvaII	GGWCC	1 cut(s)	384
AxyI	CCTNAGG	2 cut(s)	141, 661
BauI	CACGAG	2 cut(s)	112, 401
BbsI	GAAGAC	2 cut(s)	347, 728
Bbv12I	GWGCWC	1 cut(s)	711
BbvI	GCAGC	1 cut(s)	713
BccI	CCATC	2 cut(s)	69, 140
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciT130I	CCWGG	3 cut(s)	48, 180, 313
BcoDI	GTCTC	1 cut(s)	692
BcuI	ACTAGT	1 cut(s)	532
BfaI	CTAG	2 cut(s)	216, 533
BisI	GCNGC	2 cut(s)	487, 727
BlsI	GCNGC	2 cut(s)	488, 728
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	3 cut(s)	48, 180, 313
Bme18I	GGWCC	1 cut(s)	384
BmgT120I	GGNCC	2 cut(s)	384, 627
BmiI	GGNNCC	1 cut(s)	59
BmrFI	CCNGG	3 cut(s)	48, 180, 313
BpiI	GAAGAC	2 cut(s)	347, 728
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
BsaJI	CCNNGG	4 cut(s)	167, 312, 581, 618
BsaWI	WCCGGW	1 cut(s)	463
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	3 cut(s)	374, 463, 624
Bse1I	ACTGG	1 cut(s)	289
Bse21I	CCTNAGG	2 cut(s)	141, 661
Bse3DI	GCAATG	1 cut(s)	562
BseBI	CCWGG	3 cut(s)	48, 180, 313
BseDI	CCNNGG	4 cut(s)	167, 312, 581, 618
BseGI	GGATG	4 cut(s)	61, 135, 339, 656
BseLI	CCNNNNNNNGG	3 cut(s)	374, 463, 624
BseMI	GCAATG	1 cut(s)	562
BseMII	CTCAG	4 cut(s)	25, 26, 132, 675
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	1 cut(s)	719
BseXI	GCAGC	1 cut(s)	713
BsgI	GTGCAG	1 cut(s)	566
BshFI	GGCC	4 cut(s)	224, 551, 595, 629
BsiHKAI	GWGCWC	1 cut(s)	711
BsiSI	CCGG	1 cut(s)	464
BslI	CCNNNNNNNGG	3 cut(s)	374, 463, 624
BsmAI	GTCTC	1 cut(s)	692
BsnI	GGCC	4 cut(s)	224, 551, 595, 629
Bsp1286I	GDGCHC	1 cut(s)	711
Bsp143I	GATC	2 cut(s)	163, 245
BspACI	CCGC	1 cut(s)	487
BspANI	GGCC	4 cut(s)	224, 551, 595, 629
BspCNI	CTCAG	4 cut(s)	24, 27, 133, 674
BspHI	TCATGA	1 cut(s)	612
BspLI	GGNNCC	1 cut(s)	59
BspPI	GGATC	1 cut(s)	158
BspQI	GCTCTTC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	562
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	4 cut(s)	167, 312, 581, 618
BssMI	GATC	2 cut(s)	163, 245
BssSI	CACGAG	2 cut(s)	112, 401
BssT1I	CCWWGG	3 cut(s)	167, 581, 618
Bst2BI	CACGAG	2 cut(s)	112, 401
Bst2UI	CCWGG	3 cut(s)	48, 180, 313
Bst4CI	ACNGT	1 cut(s)	759
Bst6I	CTCTTC	2 cut(s)	69, 708
BstAPI	GCANNNNNTGC	1 cut(s)	726
BstC8I	GCNNGC	3 cut(s)	126, 549, 553
BstDEI	CTNAG	4 cut(s)	11, 35, 141, 661
BstF5I	GGATG	4 cut(s)	61, 135, 339, 656
BstHHI	GCGC	2 cut(s)	102, 646
BstKTI	GATC	2 cut(s)	166, 248
BstMAI	GTCTC	1 cut(s)	692
BstMBI	GATC	2 cut(s)	163, 245
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 726
BstNI	CCWGG	3 cut(s)	48, 180, 313
BstSCI	CCNGG	3 cut(s)	46, 178, 311
BstV1I	GCAGC	1 cut(s)	713
BstV2I	GAAGAC	2 cut(s)	347, 728
Bsu36I	CCTNAGG	2 cut(s)	141, 661
BsuRI	GGCC	4 cut(s)	224, 551, 595, 629
BtsCI	GGATG	4 cut(s)	61, 135, 339, 656
BtsI	GCAGTG	1 cut(s)	517
BtsIMutI	CAGTG	1 cut(s)	517
Cac8I	GCNNGC	3 cut(s)	126, 549, 553
CaiI	CAGNNNCTG	2 cut(s)	266, 726
CciI	TCATGA	1 cut(s)	612
CfoI	GCGC	2 cut(s)	102, 646
Cfr13I	GGNCC	2 cut(s)	384, 627
Csp6I	GTAC	3 cut(s)	91, 202, 229
CviAII	CATG	2 cut(s)	374, 613
CviQI	GTAC	3 cut(s)	91, 202, 229
DdeI	CTNAG	4 cut(s)	11, 35, 141, 661
DpnI	GATC	2 cut(s)	165, 247
DpnII	GATC	2 cut(s)	163, 245
Eam1104I	CTCTTC	2 cut(s)	69, 708
EarI	CTCTTC	2 cut(s)	69, 708
Eco130I	CCWWGG	3 cut(s)	167, 581, 618
Eco147I	AGGCCT	1 cut(s)	551
Eco47I	GGWCC	1 cut(s)	384
Eco57I	CTGAAG	3 cut(s)	71, 193, 444
Eco81I	CCTNAGG	2 cut(s)	141, 661
EcoRII	CCWGG	3 cut(s)	46, 178, 311
EcoT14I	CCWWGG	3 cut(s)	167, 581, 618
ErhI	CCWWGG	3 cut(s)	167, 581, 618
FaeI	CATG	2 cut(s)	377, 616
FaiI	YATR	4 cut(s)	375, 398, 491, 614
FatI	CATG	2 cut(s)	373, 612
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	2 cut(s)	487, 727
FokI	GGATG	4 cut(s)	48, 122, 346, 643
Fsp4HI	GCNGC	2 cut(s)	487, 727
FspBI	CTAG	2 cut(s)	216, 533
GlaI	GCGC	2 cut(s)	101, 645
GluI	GCNGC	2 cut(s)	487, 727
HaeIII	GGCC	4 cut(s)	224, 551, 595, 629
HapII	CCGG	1 cut(s)	464
HhaI	GCGC	2 cut(s)	102, 646
Hin1II	CATG	2 cut(s)	377, 616
Hin6I	GCGC	2 cut(s)	100, 644
HinP1I	GCGC	2 cut(s)	100, 644
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HinfI	GANTC	2 cut(s)	343, 675
HpaII	CCGG	1 cut(s)	464
HphI	GGTGA	2 cut(s)	194, 478
Hpy166II	GTNNAC	3 cut(s)	109, 469, 562
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	1 cut(s)	613
Hpy8I	GTNNAC	3 cut(s)	109, 469, 562
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	759
HpyCH4V	TGCA	5 cut(s)	156, 400, 547, 555, 729
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 726
HpyF3I	CTNAG	4 cut(s)	11, 35, 141, 661
Hsp92II	CATG	2 cut(s)	377, 616
HspAI	GCGC	2 cut(s)	100, 644
Kzo9I	GATC	2 cut(s)	163, 245
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	706
Lsp1109I	GCAGC	1 cut(s)	713
MaeI	CTAG	2 cut(s)	216, 533
MaeIII	GTNAC	1 cut(s)	676
MalI	GATC	2 cut(s)	165, 247
MboI	GATC	2 cut(s)	163, 245
MfeI	CAATTG	1 cut(s)	472
MhlI	GDGCHC	1 cut(s)	711
MluCI	AATT	3 cut(s)	300, 472, 631
MlyI	GAGTC	2 cut(s)	337, 684
MroXI	GAANNNNTTC	1 cut(s)	534
MspI	CCGG	1 cut(s)	464
MspR9I	CCNGG	3 cut(s)	48, 180, 313
MunI	CAATTG	1 cut(s)	472
MvaI	CCWGG	3 cut(s)	48, 180, 313
MwoI	GCNNNNNNNGC	2 cut(s)	40, 726
NdeII	GATC	2 cut(s)	163, 245
NlaIII	CATG	2 cut(s)	377, 616
NlaIV	GGNNCC	1 cut(s)	59
NmeAIII	GCCGAG	1 cut(s)	571
NmuCI	GTSAC	1 cut(s)	676
PagI	TCATGA	1 cut(s)	612
PceI	AGGCCT	1 cut(s)	551
PciSI	GCTCTTC	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	1 cut(s)	693
PdmI	GAANNNNTTC	1 cut(s)	534
PkrI	GCNGC	2 cut(s)	488, 728
PleI	GAGTC	2 cut(s)	337, 683
PpsI	GAGTC	2 cut(s)	337, 683
Psp6I	CCWGG	3 cut(s)	46, 178, 311
PspGI	CCWGG	3 cut(s)	46, 178, 311
PspN4I	GGNNCC	1 cut(s)	59
PspPI	GGNCC	2 cut(s)	384, 627
PstNI	CAGNNNCTG	2 cut(s)	266, 726
RsaI	GTAC	3 cut(s)	92, 203, 230
RsaNI	GTAC	3 cut(s)	91, 202, 229
SapI	GCTCTTC	1 cut(s)	69
SatI	GCNGC	2 cut(s)	487, 727
Sau3AI	GATC	2 cut(s)	163, 245
Sau96I	GGNCC	2 cut(s)	384, 627
ScaI	AGTACT	1 cut(s)	92
SchI	GAGTC	2 cut(s)	337, 684
ScrFI	CCNGG	3 cut(s)	48, 180, 313
SduI	GDGCHC	1 cut(s)	711
SinI	GGWCC	1 cut(s)	384
SpeI	ACTAGT	1 cut(s)	532
Sse9I	AATT	3 cut(s)	300, 472, 631
SseBI	AGGCCT	1 cut(s)	551
SsiI	CCGC	1 cut(s)	487
SspMI	CTAG	2 cut(s)	216, 533
StuI	AGGCCT	1 cut(s)	551
StyD4I	CCNGG	3 cut(s)	46, 178, 311
StyI	CCWWGG	3 cut(s)	167, 581, 618
TaaI	ACNGT	1 cut(s)	759
TaqII	GACCGA	2 cut(s)	401, 579
TasI	AATT	3 cut(s)	300, 472, 631
TatI	WGTACW	1 cut(s)	90
TauI	GCSGC	1 cut(s)	489
TscAI	CASTG	1 cut(s)	517
TseFI	GTSAC	1 cut(s)	676
TseI	GCWGC	1 cut(s)	726
Tsp45I	GTSAC	1 cut(s)	676
TspDTI	ATGAA	3 cut(s)	350, 601, 645
TspRI	CASTG	1 cut(s)	517
VpaK11BI	GGWCC	1 cut(s)	384
XmiI	GTMKAC	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	534
XspI	CTAG	2 cut(s)	216, 533
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.