Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011761

Physical Location & Seq

Genomic Coordinates Reverse (-)

23497788 .. 23499637

Gene Structure 1850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G220400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAGAGGCTTAATTTTGTAAAGAATGGTGTGCTTAGATTGCCTCCTGGGTTTCGCTTCCACCCCACGGATGAAGAGCTGGTTCTTCAGTACTTGAAGCGCAAGGTGTTCTCTTGCCCTTTGCCTGCCTCTATCATCCCTGAGGTTGAAGTTTGCAAGGCTGACCCTTGGGATTTGCCAGGTGATTGTGAGCAAGAGAGGTACTTCTTCAGCACTAGGGAAGCCAAGTACCCCAATGGGAGCAGATCAAACAGGGCAACCGGTTCTGGGTATTGGAAGGCAACTGGGTTAGACAAGCAAATTGTGACTTCTAGGGGCAACCAAGTTGTGGGTATGAAGAAAACTCTGGTTTTTTATAGAGGAAAGCCTCCCCATGGCACTAGGACTGATTGGATTATGCATGAATATCGCCTTGTTTTGGCTGAAAATACAGCCCCCAATGCCCCACGAGAAAAGAACTCAACCCAATTGCAGAGCCCTGTGGTGCCAATGGACAATTGGGTCCTCTGCCGCATATTCTTGAAGAAAAGAGGTGGTAAAAATGAGGAGGAGCAAGTTCAACAACCCTGCAATGACCGAGTGATTCGGAAACCCAAGACTGCCAGGCCTGTTTTCTACGATTTCATGACAAAAGACAGGGCGAATTTGAGCCTCGCACCTTGTTCCTCCTCCTCAGGTTCCAGCGGAGTCACAGAGGTCGTTTCTAGTGATCAAGTGGATGATCATGAAGAAAGCAGTAGTTGCAATAGTTTTCCTTACTTTAGAAGAAAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0097305 GO:0099402 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

259

Amino Acids

29.43

Weight (kDa)

9.21

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13180
fragaria_vesca	FvH4_4g23130
malus_domestica	MD13G1125000.v1.1 MD16G1125800.v1.1
prunus_persica	Prupe.1G220400_v2.0.a1
pyrus_communis	pycom13g10900 pycom16g10690
rosa_chinensis	RchiOBHm_Chr4g0429461
rosa_laevigata	RLG00000007069
rosa_multiflora	Rmu_sc0003708.1_g000017 Rmu_sc0004825.1_g000003 Rmu_sc0004825.1_g000004
rosa_roxburghii	Rroxscaffold_5G00371160
rosa_rugosa	Rorug04G0236200
rosa_samantha	Rh4AG291800 Rh4BG297600 Rh4CG313100 Rh4DG294700
rosa_wichuraiana	Rw4G025270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	500
AccB1I	GGYRCC	1 cut(s)	484
AccB7I	CCANNNNNTGG	1 cut(s)	328
AciI	CCGC	2 cut(s)	511, 684
AcsI	RAATTY	1 cut(s)	643
AcuI	CTGAAG	2 cut(s)	71, 193
AfaI	GTAC	3 cut(s)	92, 203, 230
AfiI	CCNNNNNNNGG	5 cut(s)	67, 267, 328, 374, 418
AgeI	ACCGGT	1 cut(s)	260
AgsI	TTSAA	4 cut(s)	97, 149, 523, 560
AjnI	CCWGG	3 cut(s)	46, 178, 602
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
AoxI	GGCC	1 cut(s)	605
ApoI	RAATTY	1 cut(s)	643
AsiGI	ACCGGT	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	502
AsuHPI	GGTGA	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	502
AxyI	CCTNAGG	2 cut(s)	141, 673
BanI	GGYRCC	1 cut(s)	484
BanII	GRGCYC	1 cut(s)	479
BauI	CACGAG	1 cut(s)	447
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciT130I	CCWGG	3 cut(s)	48, 180, 604
BclI	TGATCA	2 cut(s)	709, 721
BfaI	CTAG	4 cut(s)	216, 312, 381, 705
BisI	GCNGC	1 cut(s)	511
BlsI	GCNGC	1 cut(s)	512
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	3 cut(s)	48, 180, 604
Bme18I	GGWCC	1 cut(s)	502
BmgT120I	GGNCC	1 cut(s)	502
BmiI	GGNNCC	3 cut(s)	486, 503, 679
BmrFI	CCNGG	3 cut(s)	48, 180, 604
BmrI	ACTGGG	1 cut(s)	294
BmuI	ACTGGG	1 cut(s)	294
BsaJI	CCNNGG	4 cut(s)	47, 66, 167, 373
BsaWI	WCCGGW	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	5 cut(s)	67, 267, 328, 374, 418
Bse118I	RCCGGY	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	289
Bse21I	CCTNAGG	2 cut(s)	141, 673
Bse3DI	GCAATG	1 cut(s)	577
BseBI	CCWGG	3 cut(s)	48, 180, 604
BseDI	CCNNGG	4 cut(s)	47, 66, 167, 373
BseGI	GGATG	3 cut(s)	76, 135, 724
BseLI	CCNNNNNNNGG	5 cut(s)	67, 267, 328, 374, 418
BseMI	GCAATG	1 cut(s)	577
BseMII	CTCAG	2 cut(s)	132, 687
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	4 cut(s)	560, 563, 658, 661
BshFI	GGCC	1 cut(s)	607
BshNI	GGYRCC	1 cut(s)	484
BshTI	ACCGGT	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	261
BslI	CCNNNNNNNGG	5 cut(s)	67, 267, 328, 374, 418
BsnI	GGCC	1 cut(s)	607
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp143I	GATC	3 cut(s)	245, 709, 721
Bsp19I	CCATGG	1 cut(s)	373
BspACI	CCGC	2 cut(s)	511, 684
BspANI	GGCC	1 cut(s)	607
BspCNI	CTCAG	2 cut(s)	133, 686
BspHI	TCATGA	2 cut(s)	624, 724
BspLI	GGNNCC	3 cut(s)	486, 503, 679
BspQI	GCTCTTC	1 cut(s)	69
BspT107I	GGYRCC	1 cut(s)	484
BsrDI	GCAATG	1 cut(s)	577
BsrFI	RCCGGY	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	4 cut(s)	47, 66, 167, 373
BssMI	GATC	3 cut(s)	245, 709, 721
BssSI	CACGAG	1 cut(s)	447
BssT1I	CCWWGG	2 cut(s)	167, 373
Bst2BI	CACGAG	1 cut(s)	447
Bst2UI	CCWGG	3 cut(s)	48, 180, 604
Bst4CI	ACNGT	1 cut(s)	774
Bst6I	CTCTTC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	741
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	3 cut(s)	35, 141, 673
BstDSI	CCRYGG	2 cut(s)	66, 373
BstF5I	GGATG	3 cut(s)	76, 135, 724
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	3 cut(s)	248, 712, 724
BstMBI	GATC	3 cut(s)	245, 709, 721
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 440, 741
BstNI	CCWGG	3 cut(s)	48, 180, 604
BstSCI	CCNGG	3 cut(s)	46, 178, 602
Bsu36I	CCTNAGG	2 cut(s)	141, 673
BsuRI	GGCC	1 cut(s)	607
BtgI	CCRYGG	2 cut(s)	66, 373
BtsCI	GGATG	3 cut(s)	76, 135, 724
Cac8I	GCNNGC	1 cut(s)	126
CciI	TCATGA	2 cut(s)	624, 724
CfoI	GCGC	1 cut(s)	102
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	502
Csp6I	GTAC	3 cut(s)	91, 202, 229
CspAI	ACCGGT	1 cut(s)	260
CviAII	CATG	4 cut(s)	374, 401, 625, 725
CviQI	GTAC	3 cut(s)	91, 202, 229
DdeI	CTNAG	3 cut(s)	35, 141, 673
DpnI	GATC	3 cut(s)	247, 711, 723
DpnII	GATC	3 cut(s)	245, 709, 721
DrdI	GACNNNNNNGTC	1 cut(s)	500
DseDI	GACNNNNNNGTC	1 cut(s)	500
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	2 cut(s)	167, 373
Eco147I	AGGCCT	1 cut(s)	607
Eco24I	GRGCYC	1 cut(s)	479
Eco47I	GGWCC	1 cut(s)	502
Eco57I	CTGAAG	2 cut(s)	71, 193
Eco81I	CCTNAGG	2 cut(s)	141, 673
EcoO109I	RGGNCCY	1 cut(s)	502
EcoRII	CCWGG	3 cut(s)	46, 178, 602
EcoT14I	CCWWGG	2 cut(s)	167, 373
EcoT22I	ATGCAT	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	479
ErhI	CCWWGG	2 cut(s)	167, 373
FaeI	CATG	4 cut(s)	377, 404, 628, 728
FaiI	YATR	8 cut(s)	335, 357, 375, 398, 402, 515, 626, 726
FatI	CATG	4 cut(s)	373, 400, 624, 724
FbaI	TGATCA	2 cut(s)	709, 721
Fnu4HI	GCNGC	1 cut(s)	511
FokI	GGATG	3 cut(s)	83, 122, 731
FriOI	GRGCYC	1 cut(s)	479
Fsp4HI	GCNGC	1 cut(s)	511
FspBI	CTAG	4 cut(s)	216, 312, 381, 705
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	1 cut(s)	511
HaeIII	GGCC	1 cut(s)	607
HapII	CCGG	1 cut(s)	261
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	4 cut(s)	377, 404, 628, 728
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HinfI	GANTC	2 cut(s)	583, 687
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	1 cut(s)	194
Hpy188I	TCNGA	1 cut(s)	588
Hpy188III	TCNNGA	3 cut(s)	520, 625, 725
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	774
HpyCH4V	TGCA	5 cut(s)	156, 400, 472, 570, 744
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 440, 741
HpyF3I	CTNAG	3 cut(s)	35, 141, 673
Hsp92II	CATG	4 cut(s)	377, 404, 628, 728
HspAI	GCGC	1 cut(s)	100
Ksp22I	TGATCA	2 cut(s)	709, 721
Kzo9I	GATC	3 cut(s)	245, 709, 721
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	2 cut(s)	240, 550
MaeI	CTAG	4 cut(s)	216, 312, 381, 705
MaeIII	GTNAC	2 cut(s)	304, 688
MalI	GATC	3 cut(s)	247, 711, 723
MboI	GATC	3 cut(s)	245, 709, 721
MboII	GAAGA	7 cut(s)	77, 86, 199, 349, 535, 740, 777
MfeI	CAATTG	2 cut(s)	467, 496
MhlI	GDGCHC	1 cut(s)	479
MluCI	AATT	5 cut(s)	13, 300, 467, 496, 643
MlyI	GAGTC	1 cut(s)	696
Mph1103I	ATGCAT	1 cut(s)	402
MseI	TTAA	1 cut(s)	12
MspA1I	CMGCKG	1 cut(s)	684
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	3 cut(s)	48, 180, 604
MunI	CAATTG	2 cut(s)	467, 496
MvaI	CCWGG	3 cut(s)	48, 180, 604
MwoI	GCNNNNNNNGC	3 cut(s)	40, 440, 741
NcoI	CCATGG	1 cut(s)	373
NdeII	GATC	3 cut(s)	245, 709, 721
NlaIII	CATG	4 cut(s)	377, 404, 628, 728
NlaIV	GGNNCC	3 cut(s)	486, 503, 679
NmuCI	GTSAC	2 cut(s)	304, 688
NsiI	ATGCAT	1 cut(s)	402
PagI	TCATGA	2 cut(s)	624, 724
PceI	AGGCCT	1 cut(s)	607
PciSI	GCTCTTC	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	583
PflMI	CCANNNNNTGG	1 cut(s)	328
PinAI	ACCGGT	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	512
PleI	GAGTC	1 cut(s)	695
PpsI	GAGTC	1 cut(s)	695
PpuMI	RGGWCCY	1 cut(s)	502
Psp5II	RGGWCCY	1 cut(s)	502
Psp6I	CCWGG	3 cut(s)	46, 178, 602
PspGI	CCWGG	3 cut(s)	46, 178, 602
PspN4I	GGNNCC	3 cut(s)	486, 503, 679
PspPI	GGNCC	1 cut(s)	502
PspPPI	RGGWCCY	1 cut(s)	502
RsaI	GTAC	3 cut(s)	92, 203, 230
RsaNI	GTAC	3 cut(s)	91, 202, 229
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	1 cut(s)	511
Sau3AI	GATC	3 cut(s)	245, 709, 721
Sau96I	GGNCC	1 cut(s)	502
ScaI	AGTACT	1 cut(s)	92
SchI	GAGTC	1 cut(s)	696
ScrFI	CCNGG	3 cut(s)	48, 180, 604
SduI	GDGCHC	1 cut(s)	479
SetI	ASST	9 cut(s)	81, 108, 147, 184, 203, 535, 661, 679, 699
SinI	GGWCC	1 cut(s)	502
Sse9I	AATT	5 cut(s)	13, 300, 467, 496, 643
SseBI	AGGCCT	1 cut(s)	607
SsiI	CCGC	2 cut(s)	511, 684
SspMI	CTAG	4 cut(s)	216, 312, 381, 705
StuI	AGGCCT	1 cut(s)	607
StyD4I	CCNGG	3 cut(s)	46, 178, 602
StyI	CCWWGG	2 cut(s)	167, 373
TaaI	ACNGT	1 cut(s)	774
TaqII	GACCGA	1 cut(s)	591
TasI	AATT	5 cut(s)	13, 300, 467, 496, 643
TatI	WGTACW	1 cut(s)	90
TauI	GCSGC	1 cut(s)	513
TfiI	GAWTC	1 cut(s)	583
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TseFI	GTSAC	2 cut(s)	304, 688
Tsp45I	GTSAC	2 cut(s)	304, 688
TspDTI	ATGAA	5 cut(s)	87, 350, 417, 613, 741
TspGWI	ACGGA	1 cut(s)	83
Van91I	CCANNNNNTGG	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	502
XapI	RAATTY	1 cut(s)	643
XcmI	CCANNNNNNNNNTGG	1 cut(s)	495
XspI	CTAG	4 cut(s)	216, 312, 381, 705
ZrmI	AGTACT	1 cut(s)	92
Zsp2I	ATGCAT	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.