Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0011761

Physical Location & Seq

Genomic Coordinates Reverse (-)

52803024 .. 52804605

Gene Structure 1582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00371160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGAGAAGCTCAGTTTTGTGAGGAATGGAGAGCTGAGATTGCCTCCTGGTTTTCGGTTCCATCCTACTGACGAAGAGCTTGTTCTTCAGTACTTGAAGCGCAAGGTCTACTCGTGTCCTTTGCCTGCTTCCATCATCCCTGAGGTTGAAGTCTGCAAGTCTGATCCTTGGGATTTGCCAGGTGATTTAGAGCAAGAGAGGTACTTCTTCAGCACTAGGGAGGCCAAGTACCCAAATGGGAACAGATCAAACAGAGCAACATCTTCTGGGTATTGGAAGGCAACTGGTTTGGACAAGCAAATTGTGGCTTCCAGGGGTAACCAAGTTGTTGGGATGAAGAAGACTTTGGTTTTTTACAGAGGAAAACCTCCGCATGGGAGTAGGACCGATTGGATTATGCACGAGTATCGCCTCGTTTTAGCTGAAGATAAAAATAACTCCACCACCCAAAGCCCTGTTCCGGTGAACAATTGGGTTCTTTGCCGCATATTTTTGAAGAAAAGAGGCAGTGGTAAAAACGAGGAAGAACTAGTTCAAGTGCAGGCCTGCAATGTTGACCGAGTGGCGAAAAATCCAAGGATTACTCGGCCTGTTTTCTACGATTTCATGACCAAGGACAGGACCAATTTGAGCCTTGCGCCTTGTTCTTCATCCTCAGGTTCAAGTGGAGTCACAGATGTCGTTTCTACCGAGACAGAGGAGCACGAAGAGAGCAGTAGCTGCAATAGTCTTCCTTTTTTAAGAAGAAAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0097305 GO:0099402 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

251

Amino Acids

28.58

Weight (kDa)

9.08

Isoelectric Point (pI)

49.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	15 - 138	1.8e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13180
fragaria_vesca	FvH4_4g23130
malus_domestica	MD13G1125000.v1.1 MD16G1125800.v1.1
prunus_persica	Prupe.1G220400_v2.0.a1
pyrus_communis	pycom13g10900 pycom16g10690
rosa_chinensis	RchiOBHm_Chr4g0429461
rosa_laevigata	RLG00000007069
rosa_multiflora	Rmu_sc0003708.1_g000017 Rmu_sc0004825.1_g000003 Rmu_sc0004825.1_g000004
rosa_roxburghii	Rroxscaffold_5G00371160
rosa_rugosa	Rorug04G0236200
rosa_samantha	Rh4AG291800 Rh4BG297600 Rh4CG313100 Rh4DG294700
rosa_wichuraiana	Rw4G025270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	108
AciI	CCGC	2 cut(s)	371, 484
AclWI	GGATC	1 cut(s)	158
AcuI	CTGAAG	3 cut(s)	71, 193, 444
AfaI	GTAC	3 cut(s)	92, 203, 230
AfiI	CCNNNNNNNGG	3 cut(s)	374, 460, 618
AgsI	TTSAA	5 cut(s)	97, 149, 496, 536, 663
AhlI	ACTAGT	1 cut(s)	529
AjnI	CCWGG	3 cut(s)	46, 178, 311
AjuI	GAANNNNNNNTTGG	4 cut(s)	329, 361, 441, 473
AluBI	AGCT	5 cut(s)	10, 34, 79, 422, 720
AluI	AGCT	5 cut(s)	10, 34, 79, 422, 720
Alw21I	GWGCWC	1 cut(s)	705
Alw26I	GTCTC	1 cut(s)	686
AlwI	GGATC	1 cut(s)	158
AlwNI	CAGNNNCTG	1 cut(s)	720
AoxI	GGCC	3 cut(s)	222, 543, 587
ApeKI	GCWGC	1 cut(s)	720
Asp700I	GAANNNNTTC	1 cut(s)	531
AspLEI	GCGC	2 cut(s)	102, 640
AspS9I	GGNCC	2 cut(s)	384, 621
AsuHPI	GGTGA	2 cut(s)	194, 475
AvaII	GGWCC	2 cut(s)	384, 621
AxyI	CCTNAGG	2 cut(s)	141, 655
BauI	CACGAG	2 cut(s)	112, 401
BbsI	GAAGAC	2 cut(s)	347, 722
Bbv12I	GWGCWC	1 cut(s)	705
BbvI	GCAGC	1 cut(s)	707
BccI	CCATC	2 cut(s)	69, 140
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciT130I	CCWGG	3 cut(s)	48, 180, 313
BcoDI	GTCTC	1 cut(s)	686
BcuI	ACTAGT	1 cut(s)	529
BfaI	CTAG	2 cut(s)	216, 530
BisI	GCNGC	2 cut(s)	484, 721
BlsI	GCNGC	2 cut(s)	485, 722
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	3 cut(s)	48, 180, 313
Bme18I	GGWCC	2 cut(s)	384, 621
BmgT120I	GGNCC	2 cut(s)	384, 621
BmiI	GGNNCC	1 cut(s)	59
BmrFI	CCNGG	3 cut(s)	48, 180, 313
BpiI	GAAGAC	2 cut(s)	347, 722
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
BsaJI	CCNNGG	4 cut(s)	167, 312, 575, 612
BsaWI	WCCGGW	1 cut(s)	460
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	3 cut(s)	374, 460, 618
Bse1I	ACTGG	1 cut(s)	289
Bse21I	CCTNAGG	2 cut(s)	141, 655
Bse3DI	GCAATG	1 cut(s)	556
BseBI	CCWGG	3 cut(s)	48, 180, 313
BseDI	CCNNGG	4 cut(s)	167, 312, 575, 612
BseGI	GGATG	4 cut(s)	61, 135, 339, 650
BseLI	CCNNNNNNNGG	3 cut(s)	374, 460, 618
BseMI	GCAATG	1 cut(s)	556
BseMII	CTCAG	4 cut(s)	25, 26, 132, 669
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	1 cut(s)	713
BseXI	GCAGC	1 cut(s)	707
BsgI	GTGCAG	1 cut(s)	560
BshFI	GGCC	3 cut(s)	224, 545, 589
BsiHKAI	GWGCWC	1 cut(s)	705
BsiSI	CCGG	1 cut(s)	461
BslI	CCNNNNNNNGG	3 cut(s)	374, 460, 618
BsmAI	GTCTC	1 cut(s)	686
BsnI	GGCC	3 cut(s)	224, 545, 589
Bsp1286I	GDGCHC	1 cut(s)	705
Bsp143I	GATC	2 cut(s)	163, 245
BspACI	CCGC	2 cut(s)	371, 484
BspANI	GGCC	3 cut(s)	224, 545, 589
BspCNI	CTCAG	4 cut(s)	24, 27, 133, 668
BspHI	TCATGA	1 cut(s)	606
BspLI	GGNNCC	1 cut(s)	59
BspPI	GGATC	1 cut(s)	158
BspQI	GCTCTTC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	556
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	4 cut(s)	167, 312, 575, 612
BssMI	GATC	2 cut(s)	163, 245
BssSI	CACGAG	2 cut(s)	112, 401
BssT1I	CCWWGG	3 cut(s)	167, 575, 612
Bst2BI	CACGAG	2 cut(s)	112, 401
Bst2UI	CCWGG	3 cut(s)	48, 180, 313
Bst4CI	ACNGT	1 cut(s)	753
Bst6I	CTCTTC	2 cut(s)	69, 702
BstAPI	GCANNNNNTGC	1 cut(s)	720
BstC8I	GCNNGC	3 cut(s)	126, 543, 547
BstDEI	CTNAG	4 cut(s)	11, 35, 141, 655
BstEII	GGTNACC	1 cut(s)	317
BstF5I	GGATG	4 cut(s)	61, 135, 339, 650
BstHHI	GCGC	2 cut(s)	102, 640
BstKTI	GATC	2 cut(s)	166, 248
BstMAI	GTCTC	1 cut(s)	686
BstMBI	GATC	2 cut(s)	163, 245
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 720
BstNI	CCWGG	3 cut(s)	48, 180, 313
BstPI	GGTNACC	1 cut(s)	317
BstSCI	CCNGG	3 cut(s)	46, 178, 311
BstV1I	GCAGC	1 cut(s)	707
BstV2I	GAAGAC	2 cut(s)	347, 722
BstXI	CCANNNNNNTGG	1 cut(s)	329
Bsu36I	CCTNAGG	2 cut(s)	141, 655
BsuRI	GGCC	3 cut(s)	224, 545, 589
BtsCI	GGATG	4 cut(s)	61, 135, 339, 650
BtsI	GCAGTG	1 cut(s)	514
BtsIMutI	CAGTG	1 cut(s)	514
Cac8I	GCNNGC	3 cut(s)	126, 543, 547
CaiI	CAGNNNCTG	1 cut(s)	720
CciI	TCATGA	1 cut(s)	606
CfoI	GCGC	2 cut(s)	102, 640
Cfr13I	GGNCC	2 cut(s)	384, 621
Csp6I	GTAC	3 cut(s)	91, 202, 229
CviAII	CATG	2 cut(s)	374, 607
CviQI	GTAC	3 cut(s)	91, 202, 229
DdeI	CTNAG	4 cut(s)	11, 35, 141, 655
DpnI	GATC	2 cut(s)	165, 247
DpnII	GATC	2 cut(s)	163, 245
Eam1104I	CTCTTC	2 cut(s)	69, 702
EarI	CTCTTC	2 cut(s)	69, 702
Eco130I	CCWWGG	3 cut(s)	167, 575, 612
Eco147I	AGGCCT	1 cut(s)	545
Eco47I	GGWCC	2 cut(s)	384, 621
Eco57I	CTGAAG	3 cut(s)	71, 193, 444
Eco81I	CCTNAGG	2 cut(s)	141, 655
Eco91I	GGTNACC	1 cut(s)	317
EcoO65I	GGTNACC	1 cut(s)	317
EcoRII	CCWGG	3 cut(s)	46, 178, 311
EcoT14I	CCWWGG	3 cut(s)	167, 575, 612
ErhI	CCWWGG	3 cut(s)	167, 575, 612
FaeI	CATG	2 cut(s)	377, 610
FaiI	YATR	4 cut(s)	375, 398, 488, 608
FatI	CATG	2 cut(s)	373, 606
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	2 cut(s)	484, 721
FokI	GGATG	4 cut(s)	48, 122, 346, 637
Fsp4HI	GCNGC	2 cut(s)	484, 721
FspBI	CTAG	2 cut(s)	216, 530
GlaI	GCGC	2 cut(s)	101, 639
GluI	GCNGC	2 cut(s)	484, 721
HaeIII	GGCC	3 cut(s)	224, 545, 589
HapII	CCGG	1 cut(s)	461
HhaI	GCGC	2 cut(s)	102, 640
Hin1II	CATG	2 cut(s)	377, 610
Hin6I	GCGC	2 cut(s)	100, 638
HinP1I	GCGC	2 cut(s)	100, 638
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HinfI	GANTC	1 cut(s)	669
HpaII	CCGG	1 cut(s)	461
HphI	GGTGA	2 cut(s)	194, 475
Hpy166II	GTNNAC	3 cut(s)	109, 466, 556
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	1 cut(s)	607
Hpy8I	GTNNAC	3 cut(s)	109, 466, 556
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	753
HpyCH4V	TGCA	5 cut(s)	156, 400, 541, 549, 723
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 720
HpyF3I	CTNAG	4 cut(s)	11, 35, 141, 655
Hsp92II	CATG	2 cut(s)	377, 610
HspAI	GCGC	2 cut(s)	100, 638
Kzo9I	GATC	2 cut(s)	163, 245
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	700
Lsp1109I	GCAGC	1 cut(s)	707
MaeI	CTAG	2 cut(s)	216, 530
MaeIII	GTNAC	2 cut(s)	317, 670
MalI	GATC	2 cut(s)	165, 247
MboI	GATC	2 cut(s)	163, 245
MfeI	CAATTG	1 cut(s)	469
MhlI	GDGCHC	1 cut(s)	705
MluCI	AATT	3 cut(s)	300, 469, 625
MlyI	GAGTC	1 cut(s)	678
MroXI	GAANNNNTTC	1 cut(s)	531
MseI	TTAA	1 cut(s)	740
MspI	CCGG	1 cut(s)	461
MspR9I	CCNGG	3 cut(s)	48, 180, 313
MunI	CAATTG	1 cut(s)	469
MvaI	CCWGG	3 cut(s)	48, 180, 313
MwoI	GCNNNNNNNGC	2 cut(s)	40, 720
NdeII	GATC	2 cut(s)	163, 245
NlaIII	CATG	2 cut(s)	377, 610
NlaIV	GGNNCC	1 cut(s)	59
NmeAIII	GCCGAG	1 cut(s)	565
NmuCI	GTSAC	1 cut(s)	670
PagI	TCATGA	1 cut(s)	606
PceI	AGGCCT	1 cut(s)	545
PciSI	GCTCTTC	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	1 cut(s)	687
PdmI	GAANNNNTTC	1 cut(s)	531
PkrI	GCNGC	2 cut(s)	485, 722
PleI	GAGTC	1 cut(s)	677
PpsI	GAGTC	1 cut(s)	677
Psp6I	CCWGG	3 cut(s)	46, 178, 311
PspEI	GGTNACC	1 cut(s)	317
PspGI	CCWGG	3 cut(s)	46, 178, 311
PspN4I	GGNNCC	1 cut(s)	59
PspPI	GGNCC	2 cut(s)	384, 621
PstNI	CAGNNNCTG	1 cut(s)	720
RsaI	GTAC	3 cut(s)	92, 203, 230
RsaNI	GTAC	3 cut(s)	91, 202, 229
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	740
SatI	GCNGC	2 cut(s)	484, 721
Sau3AI	GATC	2 cut(s)	163, 245
Sau96I	GGNCC	2 cut(s)	384, 621
ScaI	AGTACT	1 cut(s)	92
SchI	GAGTC	1 cut(s)	678
ScrFI	CCNGG	3 cut(s)	48, 180, 313
SduI	GDGCHC	1 cut(s)	705
SinI	GGWCC	2 cut(s)	384, 621
SpeI	ACTAGT	1 cut(s)	529
Sse9I	AATT	3 cut(s)	300, 469, 625
SseBI	AGGCCT	1 cut(s)	545
SsiI	CCGC	2 cut(s)	371, 484
SspMI	CTAG	2 cut(s)	216, 530
StuI	AGGCCT	1 cut(s)	545
StyD4I	CCNGG	3 cut(s)	46, 178, 311
StyI	CCWWGG	3 cut(s)	167, 575, 612
TaaI	ACNGT	1 cut(s)	753
TaqII	GACCGA	2 cut(s)	401, 573
TasI	AATT	3 cut(s)	300, 469, 625
TatI	WGTACW	1 cut(s)	90
TauI	GCSGC	1 cut(s)	486
Tru1I	TTAA	1 cut(s)	740
Tru9I	TTAA	1 cut(s)	740
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	670
TseI	GCWGC	1 cut(s)	720
Tsp45I	GTSAC	1 cut(s)	670
TspDTI	ATGAA	3 cut(s)	350, 595, 639
TspRI	CASTG	1 cut(s)	514
VpaK11BI	GGWCC	2 cut(s)	384, 621
XmiI	GTMKAC	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	531
XspI	CTAG	2 cut(s)	216, 530
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.