Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0011761

Physical Location & Seq

Genomic Coordinates Forward (+)

9266851 .. 9268077

Gene Structure 1227 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1125000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGAGCGCGAAATCGCCACTATGAAGAAATTAGATGGAGAATTGAAAGACTCAATTGGTTTGTTTTGTTTTGGTTTAGGTGATTGTGAGCAAGAGAGGTACTTTTTCAGCACTAGGGAGGCCAAGTACCCCAATGGGAACAGATCGAACAGAGCGACCTGCTCCGGTTACTGGAAGGCGACGGGATTGGACAAGCAGATTGTGACTTGCAGGGGCGGCCAAGTCGTGGGGATGAAGAAAACTCTGGTGTTTTATAGAGGAAAGCCTCCCCATGGCACCAGGACCGATTGGATTATGCACGAATACCGCCTTGTTTTGCCCGAAAATCCGGCCTCCATTGCCCCACCGGAAAAGAATTCAACCCAAAGCCCTGTGGTGCCAATGGACAATTGGGTTCTCTGCCGCATATTTTTGAAGAAAAGGGGAGGCAAAAATGAGGAGGAGCAAGTTCAACAGCCCTCCTTCAATGTTCGAAAACCGAAGAATTTGAGGCCTGTTTTCTACGATTTCATGACGAAAGACAGGGAAAATTTGAGCCTCGCGCCTTGTTCTTCCTCCTCAGGGTCGAGTGGAATCACAGATGTGGTTTCTAGTGAGCAAGTAGACAATGATCACGGAGAAAGCAGTAGTTGCAATAGTTTAGGTTTAATTAGAAGAAAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0097305 GO:0099402 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

222

Amino Acids

24.92

Weight (kDa)

9.05

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	30 - 104	2.1e-25	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13180
fragaria_vesca	FvH4_4g23130
malus_domestica	MD13G1125000.v1.1 MD16G1125800.v1.1
prunus_persica	Prupe.1G220400_v2.0.a1
pyrus_communis	pycom13g10900 pycom16g10690
rosa_chinensis	RchiOBHm_Chr4g0429461
rosa_laevigata	RLG00000007069
rosa_multiflora	Rmu_sc0003708.1_g000017 Rmu_sc0004825.1_g000003 Rmu_sc0004825.1_g000004
rosa_roxburghii	Rroxscaffold_5G00371160
rosa_rugosa	Rorug04G0236200
rosa_samantha	Rh4AG291800 Rh4BG297600 Rh4CG313100 Rh4DG294700
rosa_wichuraiana	Rw4G025270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	167
AccB1I	GGYRCC	2 cut(s)	275, 376
AccB7I	CCANNNNNTGG	1 cut(s)	226
AccI	GTMKAC	1 cut(s)	603
AccII	CGCG	2 cut(s)	9, 542
AciI	CCGC	3 cut(s)	216, 307, 403
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	3 cut(s)	355, 484, 529
AfaI	GTAC	2 cut(s)	101, 128
AfiI	CCNNNNNNNGG	4 cut(s)	171, 226, 272, 561
AgsI	TTSAA	5 cut(s)	46, 360, 415, 452, 466
AjnI	CCWGG	1 cut(s)	278
AleI	CACNNNNGTG	1 cut(s)	581
AoxI	GGCC	4 cut(s)	120, 217, 330, 491
ApoI	RAATTY	3 cut(s)	355, 484, 529
AspLEI	GCGC	2 cut(s)	9, 544
AspS9I	GGNCC	1 cut(s)	282
AsuHPI	GGTGA	1 cut(s)	92
AsuII	TTCGAA	1 cut(s)	472
AvaII	GGWCC	1 cut(s)	282
AxyI	CCTNAGG	1 cut(s)	559
BanI	GGYRCC	2 cut(s)	275, 376
BccI	CCATC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	280
BclI	TGATCA	1 cut(s)	610
BfaI	CTAG	2 cut(s)	114, 591
BfuAI	ACCTGC	1 cut(s)	167
BisI	GCNGC	2 cut(s)	217, 403
BlsI	GCNGC	2 cut(s)	218, 404
Bme1390I	CCNGG	1 cut(s)	280
Bme18I	GGWCC	1 cut(s)	282
BmgT120I	GGNCC	1 cut(s)	282
BmiI	GGNNCC	2 cut(s)	277, 378
BmrFI	CCNGG	1 cut(s)	280
Bpu14I	TTCGAA	1 cut(s)	472
BsaJI	CCNNGG	1 cut(s)	271
BsaWI	WCCGGW	2 cut(s)	164, 346
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	4 cut(s)	171, 226, 272, 561
Bse1I	ACTGG	1 cut(s)	176
Bse21I	CCTNAGG	1 cut(s)	559
Bse3DI	GCAATG	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	280
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	1 cut(s)	237
BseLI	CCNNNNNNNGG	4 cut(s)	171, 226, 272, 561
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	1 cut(s)	573
BseNI	ACTGG	1 cut(s)	176
BseRI	GAGGAG	3 cut(s)	452, 455, 547
Bsh1236I	CGCG	2 cut(s)	9, 542
BshFI	GGCC	4 cut(s)	122, 219, 332, 493
BshNI	GGYRCC	2 cut(s)	275, 376
BsiSI	CCGG	3 cut(s)	165, 329, 347
BslI	CCNNNNNNNGG	4 cut(s)	171, 226, 272, 561
BsnI	GGCC	4 cut(s)	122, 219, 332, 493
Bsp119I	TTCGAA	1 cut(s)	472
Bsp143I	GATC	2 cut(s)	143, 610
Bsp19I	CCATGG	1 cut(s)	271
BspACI	CCGC	3 cut(s)	216, 307, 403
BspANI	GGCC	4 cut(s)	122, 219, 332, 493
BspCNI	CTCAG	1 cut(s)	572
BspFNI	CGCG	2 cut(s)	9, 542
BspHI	TCATGA	1 cut(s)	510
BspLI	GGNNCC	2 cut(s)	277, 378
BspMI	ACCTGC	1 cut(s)	167
BspT104I	TTCGAA	1 cut(s)	472
BspT107I	GGYRCC	2 cut(s)	275, 376
BsrDI	GCAATG	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	2 cut(s)	143, 610
BssT1I	CCWWGG	1 cut(s)	271
Bst2UI	CCWGG	1 cut(s)	280
Bst4CI	ACNGT	1 cut(s)	663
BstAPI	GCANNNNNTGC	1 cut(s)	630
BstBI	TTCGAA	1 cut(s)	472
BstDEI	CTNAG	1 cut(s)	559
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	237
BstFNI	CGCG	2 cut(s)	9, 542
BstHHI	GCGC	2 cut(s)	9, 544
BstKTI	GATC	2 cut(s)	146, 613
BstMBI	GATC	2 cut(s)	143, 610
BstMWI	GCNNNNNNNGC	3 cut(s)	216, 338, 630
BstNI	CCWGG	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	278
BstUI	CGCG	2 cut(s)	9, 542
Bsu36I	CCTNAGG	1 cut(s)	559
BsuRI	GGCC	4 cut(s)	122, 219, 332, 493
BtgI	CCRYGG	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	237
BveI	ACCTGC	1 cut(s)	167
CciI	TCATGA	1 cut(s)	510
CfoI	GCGC	2 cut(s)	9, 544
Cfr13I	GGNCC	1 cut(s)	282
Csp6I	GTAC	2 cut(s)	100, 127
CviAII	CATG	2 cut(s)	272, 511
CviJI	RGCY	8 cut(s)	122, 219, 265, 332, 369, 457, 493, 537
CviKI_1	RGCY	8 cut(s)	122, 219, 265, 332, 369, 457, 493, 537
CviQI	GTAC	2 cut(s)	100, 127
DdeI	CTNAG	1 cut(s)	559
DpnI	GATC	2 cut(s)	145, 612
DpnII	GATC	2 cut(s)	143, 610
EaeI	YGGCCR	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	271
Eco147I	AGGCCT	1 cut(s)	493
Eco47I	GGWCC	1 cut(s)	282
Eco81I	CCTNAGG	1 cut(s)	559
EcoRI	GAATTC	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	2 cut(s)	275, 514
FaiI	YATR	6 cut(s)	23, 255, 273, 296, 407, 512
FatI	CATG	2 cut(s)	271, 510
FbaI	TGATCA	1 cut(s)	610
FblI	GTMKAC	1 cut(s)	603
Fnu4HI	GCNGC	2 cut(s)	217, 403
FokI	GGATG	1 cut(s)	244
Fsp4HI	GCNGC	2 cut(s)	217, 403
FspBI	CTAG	2 cut(s)	114, 591
GlaI	GCGC	2 cut(s)	8, 543
GluI	GCNGC	2 cut(s)	217, 403
HaeIII	GGCC	4 cut(s)	122, 219, 332, 493
HapII	CCGG	3 cut(s)	165, 329, 347
HhaI	GCGC	2 cut(s)	9, 544
Hin1II	CATG	2 cut(s)	275, 514
Hin6I	GCGC	2 cut(s)	7, 542
HinP1I	GCGC	2 cut(s)	7, 542
HinfI	GANTC	2 cut(s)	50, 573
HpaII	CCGG	3 cut(s)	165, 329, 347
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	604
Hpy188III	TCNNGA	1 cut(s)	511
Hpy8I	GTNNAC	1 cut(s)	604
Hpy99I	CGWCG	1 cut(s)	184
HpyAV	CCTTC	2 cut(s)	169, 472
HpyCH4III	ACNGT	1 cut(s)	663
HpyCH4V	TGCA	3 cut(s)	210, 298, 633
HpyF10VI	GCNNNNNNNGC	3 cut(s)	216, 338, 630
HpyF3I	CTNAG	1 cut(s)	559
Hsp92II	CATG	2 cut(s)	275, 514
HspAI	GCGC	2 cut(s)	7, 542
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	2 cut(s)	143, 610
LmnI	GCTCC	3 cut(s)	4, 167, 442
MaeI	CTAG	2 cut(s)	114, 591
MaeIII	GTNAC	2 cut(s)	167, 202
MalI	GATC	2 cut(s)	145, 612
MboI	GATC	2 cut(s)	143, 610
MboII	GAAGA	6 cut(s)	37, 247, 427, 493, 543, 666
MfeI	CAATTG	2 cut(s)	54, 388
MluCI	AATT	8 cut(s)	29, 41, 54, 355, 388, 484, 529, 648
MlyI	GAGTC	1 cut(s)	44
MseI	TTAA	1 cut(s)	647
MslI	CAYNNNNRTG	1 cut(s)	581
MspI	CCGG	3 cut(s)	165, 329, 347
MspR9I	CCNGG	1 cut(s)	280
MunI	CAATTG	2 cut(s)	54, 388
MvaI	CCWGG	1 cut(s)	280
MvnI	CGCG	2 cut(s)	9, 542
MwoI	GCNNNNNNNGC	3 cut(s)	216, 338, 630
NcoI	CCATGG	1 cut(s)	271
NdeII	GATC	2 cut(s)	143, 610
NlaIII	CATG	2 cut(s)	275, 514
NlaIV	GGNNCC	2 cut(s)	277, 378
NmuCI	GTSAC	1 cut(s)	202
NspV	TTCGAA	1 cut(s)	472
OliI	CACNNNNGTG	1 cut(s)	581
PagI	TCATGA	1 cut(s)	510
PceI	AGGCCT	1 cut(s)	493
PcsI	WCGNNNNNNNCGW	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	573
PflMI	CCANNNNNTGG	1 cut(s)	226
PkrI	GCNGC	2 cut(s)	218, 404
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	278
PspN4I	GGNNCC	2 cut(s)	277, 378
PspPI	GGNCC	1 cut(s)	282
RsaI	GTAC	2 cut(s)	101, 128
RsaNI	GTAC	2 cut(s)	100, 127
RseI	CAYNNNNRTG	1 cut(s)	581
SaqAI	TTAA	1 cut(s)	647
SatI	GCNGC	2 cut(s)	217, 403
Sau3AI	GATC	2 cut(s)	143, 610
Sau96I	GGNCC	1 cut(s)	282
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	280
SetI	ASST	4 cut(s)	82, 101, 161, 646
SfuI	TTCGAA	1 cut(s)	472
SinI	GGWCC	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	581
Sse9I	AATT	8 cut(s)	29, 41, 54, 355, 388, 484, 529, 648
SseBI	AGGCCT	1 cut(s)	493
SsiI	CCGC	3 cut(s)	216, 307, 403
SspMI	CTAG	2 cut(s)	114, 591
StuI	AGGCCT	1 cut(s)	493
StyD4I	CCNGG	1 cut(s)	278
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	663
TaqI	TCGA	3 cut(s)	146, 472, 566
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	8 cut(s)	29, 41, 54, 355, 388, 484, 529, 648
TauI	GCSGC	2 cut(s)	219, 405
TfiI	GAWTC	1 cut(s)	573
Tru1I	TTAA	1 cut(s)	647
Tru9I	TTAA	1 cut(s)	647
TseFI	GTSAC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	3 cut(s)	38, 248, 499
TspGWI	ACGGA	1 cut(s)	630
Van91I	CCANNNNNTGG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	282
XapI	RAATTY	3 cut(s)	355, 484, 529
XcmI	CCANNNNNNNNNTGG	1 cut(s)	387
XmiI	GTMKAC	1 cut(s)	603
XspI	CTAG	2 cut(s)	114, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.