Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004825.1

Orthogroup ID

OG0011761

Physical Location & Seq

Genomic Coordinates Reverse (-)

13492 .. 14366

Gene Structure 875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004825.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atggagaagctcagttttgtgaggaatggagagctgagattgcctcctggttttcggttccatcctactgacgaagagcttgttcttcagtacttgaagcgcaaggtctactcgtgtcctttgcctgcttccatcatccctgaggttgaagtctgcaagtctgatccttgggatttgccaggtgatttagagcaagagaggtatttcttcagcactagggaggccaagtacccaaatgggaacagatcaaacagagcaacaggttctgggtattggaaggcaactggtttggacaagcaaattgtggcttccaggggtaaccaagttgttgggatgaagaagactttggttttttacagaggaaaacctccacatgggagtaggaccgattggattatgcacgagtatcgcctcgttttagctgaagataaaaataactccaccacccaaagccctgttccggtgaacaattgggttctttgccgcatatttttgaagaaaagaggcagtggaccaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0097305 GO:0099402 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

173

Amino Acids

19.84

Weight (kDa)

9.59

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13180
fragaria_vesca	FvH4_4g23130
malus_domestica	MD13G1125000.v1.1 MD16G1125800.v1.1
prunus_persica	Prupe.1G220400_v2.0.a1
pyrus_communis	pycom13g10900 pycom16g10690
rosa_chinensis	RchiOBHm_Chr4g0429461
rosa_laevigata	RLG00000007069
rosa_multiflora	Rmu_sc0003708.1_g000017 Rmu_sc0004825.1_g000003 Rmu_sc0004825.1_g000004
rosa_roxburghii	Rroxscaffold_5G00371160
rosa_rugosa	Rorug04G0236200
rosa_samantha	Rh4AG291800 Rh4BG297600 Rh4CG313100 Rh4DG294700
rosa_wichuraiana	Rw4G025270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	108
AciI	CCGC	1 cut(s)	484
AclWI	GGATC	1 cut(s)	158
AcuI	CTGAAG	3 cut(s)	71, 193, 444
AfaI	GTAC	2 cut(s)	92, 230
AfiI	CCNNNNNNNGG	2 cut(s)	374, 460
AgsI	TTSAA	3 cut(s)	97, 149, 496
AjnI	CCWGG	3 cut(s)	46, 178, 311
AjuI	GAANNNNNNNTTGG	4 cut(s)	329, 361, 441, 473
AluBI	AGCT	4 cut(s)	10, 34, 79, 422
AluI	AGCT	4 cut(s)	10, 34, 79, 422
AlwI	GGATC	1 cut(s)	158
AlwNI	CAGNNNCTG	1 cut(s)	266
AoxI	GGCC	1 cut(s)	222
AspLEI	GCGC	1 cut(s)	102
AspS9I	GGNCC	2 cut(s)	384, 512
AsuHPI	GGTGA	2 cut(s)	194, 475
AvaII	GGWCC	2 cut(s)	384, 512
AxyI	CCTNAGG	1 cut(s)	141
BauI	CACGAG	2 cut(s)	112, 401
BbsI	GAAGAC	1 cut(s)	347
BccI	CCATC	2 cut(s)	69, 140
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciT130I	CCWGG	3 cut(s)	48, 180, 313
BfaI	CTAG	1 cut(s)	216
BisI	GCNGC	1 cut(s)	484
BlsI	GCNGC	1 cut(s)	485
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	3 cut(s)	48, 180, 313
Bme18I	GGWCC	2 cut(s)	384, 512
BmgT120I	GGNCC	2 cut(s)	384, 512
BmiI	GGNNCC	1 cut(s)	59
BmrFI	CCNGG	3 cut(s)	48, 180, 313
BpiI	GAAGAC	1 cut(s)	347
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
BsaJI	CCNNGG	2 cut(s)	167, 312
BsaWI	WCCGGW	1 cut(s)	460
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	2 cut(s)	374, 460
Bse1I	ACTGG	1 cut(s)	289
Bse21I	CCTNAGG	1 cut(s)	141
BseBI	CCWGG	3 cut(s)	48, 180, 313
BseDI	CCNNGG	2 cut(s)	167, 312
BseGI	GGATG	3 cut(s)	61, 135, 339
BseLI	CCNNNNNNNGG	2 cut(s)	374, 460
BseMII	CTCAG	3 cut(s)	25, 26, 132
BseNI	ACTGG	1 cut(s)	289
BshFI	GGCC	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	461
BslI	CCNNNNNNNGG	2 cut(s)	374, 460
BsnI	GGCC	1 cut(s)	224
Bsp143I	GATC	2 cut(s)	163, 245
BspACI	CCGC	1 cut(s)	484
BspANI	GGCC	1 cut(s)	224
BspCNI	CTCAG	3 cut(s)	24, 27, 133
BspLI	GGNNCC	1 cut(s)	59
BspPI	GGATC	1 cut(s)	158
BspQI	GCTCTTC	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	167, 312
BssMI	GATC	2 cut(s)	163, 245
BssSI	CACGAG	2 cut(s)	112, 401
BssT1I	CCWWGG	1 cut(s)	167
Bst2BI	CACGAG	2 cut(s)	112, 401
Bst2UI	CCWGG	3 cut(s)	48, 180, 313
Bst6I	CTCTTC	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	3 cut(s)	11, 35, 141
BstEII	GGTNACC	1 cut(s)	317
BstF5I	GGATG	3 cut(s)	61, 135, 339
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	2 cut(s)	166, 248
BstMBI	GATC	2 cut(s)	163, 245
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstNI	CCWGG	3 cut(s)	48, 180, 313
BstPI	GGTNACC	1 cut(s)	317
BstSCI	CCNGG	3 cut(s)	46, 178, 311
BstV2I	GAAGAC	1 cut(s)	347
BstXI	CCANNNNNNTGG	1 cut(s)	329
Bsu36I	CCTNAGG	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	224
BtsCI	GGATG	3 cut(s)	61, 135, 339
BtsI	GCAGTG	1 cut(s)	514
BtsIMutI	CAGTG	1 cut(s)	514
Cac8I	GCNNGC	1 cut(s)	126
CaiI	CAGNNNCTG	1 cut(s)	266
CfoI	GCGC	1 cut(s)	102
Cfr13I	GGNCC	2 cut(s)	384, 512
Csp6I	GTAC	2 cut(s)	91, 229
CviAII	CATG	1 cut(s)	374
CviJI	RGCY	7 cut(s)	10, 34, 79, 224, 308, 422, 453
CviKI_1	RGCY	7 cut(s)	10, 34, 79, 224, 308, 422, 453
CviQI	GTAC	2 cut(s)	91, 229
DdeI	CTNAG	3 cut(s)	11, 35, 141
DpnI	GATC	2 cut(s)	165, 247
DpnII	GATC	2 cut(s)	163, 245
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	167
Eco47I	GGWCC	2 cut(s)	384, 512
Eco57I	CTGAAG	3 cut(s)	71, 193, 444
Eco81I	CCTNAGG	1 cut(s)	141
Eco91I	GGTNACC	1 cut(s)	317
EcoO65I	GGTNACC	1 cut(s)	317
EcoRII	CCWGG	3 cut(s)	46, 178, 311
EcoT14I	CCWWGG	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	167
FaeI	CATG	1 cut(s)	377
FaiI	YATR	3 cut(s)	375, 398, 488
FatI	CATG	1 cut(s)	373
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	484
FokI	GGATG	3 cut(s)	48, 122, 346
Fsp4HI	GCNGC	1 cut(s)	484
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	1 cut(s)	484
HaeIII	GGCC	1 cut(s)	224
HapII	CCGG	1 cut(s)	461
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	377
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HpaII	CCGG	1 cut(s)	461
HphI	GGTGA	2 cut(s)	194, 475
Hpy166II	GTNNAC	3 cut(s)	109, 466, 512
Hpy188I	TCNGA	1 cut(s)	163
Hpy8I	GTNNAC	3 cut(s)	109, 466, 512
HpyAV	CCTTC	1 cut(s)	271
HpyCH4V	TGCA	2 cut(s)	156, 400
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	3 cut(s)	11, 35, 141
Hsp92II	CATG	1 cut(s)	377
HspAI	GCGC	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	163, 245
LguI	GCTCTTC	1 cut(s)	69
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	2 cut(s)	165, 247
MboI	GATC	2 cut(s)	163, 245
MboII	GAAGA	7 cut(s)	77, 86, 199, 349, 352, 437, 508
MfeI	CAATTG	1 cut(s)	469
MluCI	AATT	3 cut(s)	300, 469, 516
MnlI	CCTC	9 cut(s)	15, 54, 136, 192, 214, 353, 378, 422, 497
MspI	CCGG	1 cut(s)	461
MspR9I	CCNGG	3 cut(s)	48, 180, 313
MunI	CAATTG	1 cut(s)	469
MvaI	CCWGG	3 cut(s)	48, 180, 313
MwoI	GCNNNNNNNGC	1 cut(s)	40
NdeII	GATC	2 cut(s)	163, 245
NlaIII	CATG	1 cut(s)	377
NlaIV	GGNNCC	1 cut(s)	59
PciSI	GCTCTTC	1 cut(s)	69
PkrI	GCNGC	1 cut(s)	485
Psp6I	CCWGG	3 cut(s)	46, 178, 311
PspEI	GGTNACC	1 cut(s)	317
PspGI	CCWGG	3 cut(s)	46, 178, 311
PspN4I	GGNNCC	1 cut(s)	59
PspPI	GGNCC	2 cut(s)	384, 512
PstNI	CAGNNNCTG	1 cut(s)	266
RsaI	GTAC	2 cut(s)	92, 230
RsaNI	GTAC	2 cut(s)	91, 229
SapI	GCTCTTC	1 cut(s)	69
SatI	GCNGC	1 cut(s)	484
Sau3AI	GATC	2 cut(s)	163, 245
Sau96I	GGNCC	2 cut(s)	384, 512
ScaI	AGTACT	1 cut(s)	92
ScrFI	CCNGG	3 cut(s)	48, 180, 313
SinI	GGWCC	2 cut(s)	384, 512
Sse9I	AATT	3 cut(s)	300, 469, 516
SsiI	CCGC	1 cut(s)	484
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	3 cut(s)	46, 178, 311
StyI	CCWWGG	1 cut(s)	167
TaqII	GACCGA	1 cut(s)	401
TasI	AATT	3 cut(s)	300, 469, 516
TatI	WGTACW	1 cut(s)	90
TauI	GCSGC	1 cut(s)	486
TscAI	CASTG	1 cut(s)	514
TspDTI	ATGAA	1 cut(s)	350
TspRI	CASTG	1 cut(s)	514
VpaK11BI	GGWCC	2 cut(s)	384, 512
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	1 cut(s)	216
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.