Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0011761

Physical Location & Seq

Genomic Coordinates Forward (+)

7348508 .. 7349651

Gene Structure 1144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g10900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAGAGGATTAGTTTTGTGAAGAATGGTGTGCTGAGACTGCCTCCCGGTTTTCGATTCCACCCGACCGACGAGGAGCTTGTTCTGCAGTACTTGCGGCGCAAGGCTTACTCCTGCCCTTTGCCTGCCTCCATCATCCCGGAGGTCGATGTCTGCAAGGCCGACCCTTGGGATTTGCCAGGTGATTGTGAGCAAGAGAGGTACTTCTTCAGCACTAGGGAGGCCAAGTACCCCAATGGGAACAGATCGAACAGAGCGACCTGCTCCGGTTACTGGAAGGCGACCGGATTGGACAAGCAGATTGTGACTTGCAGGGGTGGCCAAGTCGTGGGGATGAAGAAAACTCTGGTGTTTTATAGGGGAAAGCCTCCCCATGGCACTAGGACCGATTGGATTATGCACGAATACCGCCTTGTTTTGCCCGAAACTCCGGCCTCCATTGCCCCACCGGAAAAGAATTCAACCCATAGCCCTGTGGTGCCAATGGACAATTGGGTTCTCTGCCGCATATTTTTGAAGAAAAGGGGAGGCAAAAATGAGGAGGAGCAAGTTCAACAGCCCTCCTTCAATGTTCGAAAACCGAAGAATTTGAGGCCTGTTTTCTACGATTTCATGACAAAAGACCGGGAAAATTTGAGCCTCGCGCCTTGTTCTTCCTCCTCAGGATCGAGTCGAATCACAGATGTGGTTTCTAGTGAGCAAGTAGACAATGATCACGGAGAAAGCAGTAGTTGCAATAGTTTAGGTTTAATTAGAAGAAAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0097305 GO:0099402 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

256

Amino Acids

29.0

Weight (kDa)

9.17

Isoelectric Point (pI)

50.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	15 - 138	8.7e-48	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13180
fragaria_vesca	FvH4_4g23130
malus_domestica	MD13G1125000.v1.1 MD16G1125800.v1.1
prunus_persica	Prupe.1G220400_v2.0.a1
pyrus_communis	pycom13g10900 pycom16g10690
rosa_chinensis	RchiOBHm_Chr4g0429461
rosa_laevigata	RLG00000007069
rosa_multiflora	Rmu_sc0003708.1_g000017 Rmu_sc0004825.1_g000003 Rmu_sc0004825.1_g000004
rosa_roxburghii	Rroxscaffold_5G00371160
rosa_rugosa	Rorug04G0236200
rosa_samantha	Rh4AG291800 Rh4BG297600 Rh4CG313100 Rh4DG294700
rosa_wichuraiana	Rw4G025270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	269
AccB1I	GGYRCC	1 cut(s)	478
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	705
AccII	CGCG	1 cut(s)	644
AciI	CCGC	3 cut(s)	97, 409, 505
AclWI	GGATC	1 cut(s)	673
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	3 cut(s)	457, 586, 631
AcuI	CTGAAG	1 cut(s)	193
AfaI	GTAC	3 cut(s)	92, 203, 230
AfiI	CCNNNNNNNGG	4 cut(s)	168, 273, 328, 374
AgsI	TTSAA	4 cut(s)	462, 517, 554, 568
AjnI	CCWGG	1 cut(s)	178
AleI	CACNNNNGTG	1 cut(s)	683
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	673
AoxI	GGCC	5 cut(s)	159, 222, 319, 432, 593
ApoI	RAATTY	3 cut(s)	457, 586, 631
AspLEI	GCGC	2 cut(s)	102, 646
AspS9I	GGNCC	1 cut(s)	384
AsuC2I	CCSGG	3 cut(s)	48, 140, 626
AsuHPI	GGTGA	1 cut(s)	194
AsuII	TTCGAA	1 cut(s)	574
AvaII	GGWCC	1 cut(s)	384
AxyI	CCTNAGG	1 cut(s)	661
BalI	TGGCCA	1 cut(s)	321
BanI	GGYRCC	1 cut(s)	478
BccI	CCATC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	180
BclI	TGATCA	1 cut(s)	712
BcnI	CCSGG	3 cut(s)	48, 140, 626
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	3 cut(s)	216, 381, 693
BfmI	CTRYAG	1 cut(s)	86
BfuAI	ACCTGC	1 cut(s)	269
BisI	GCNGC	2 cut(s)	98, 505
BlsI	GCNGC	2 cut(s)	99, 506
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	4 cut(s)	48, 140, 180, 626
Bme18I	GGWCC	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	384
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	4 cut(s)	48, 140, 180, 626
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
Bpu14I	TTCGAA	1 cut(s)	574
BpuMI	CCSGG	3 cut(s)	48, 140, 626
BsaJI	CCNNGG	2 cut(s)	167, 373
BsaWI	WCCGGW	3 cut(s)	266, 284, 448
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	4 cut(s)	168, 273, 328, 374
Bse1I	ACTGG	1 cut(s)	278
Bse21I	CCTNAGG	1 cut(s)	661
Bse3DI	GCAATG	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	2 cut(s)	167, 373
BseGI	GGATG	2 cut(s)	135, 339
BseLI	CCNNNNNNNGG	4 cut(s)	168, 273, 328, 374
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	2 cut(s)	26, 675
BseNI	ACTGG	1 cut(s)	278
BseRI	GAGGAG	4 cut(s)	89, 554, 557, 649
Bsh1236I	CGCG	1 cut(s)	644
Bsh1285I	CGRYCG	2 cut(s)	69, 285
BshFI	GGCC	5 cut(s)	161, 224, 321, 434, 595
BshNI	GGYRCC	1 cut(s)	478
BsiEI	CGRYCG	2 cut(s)	69, 285
BsiSI	CCGG	7 cut(s)	48, 140, 267, 285, 431, 449, 625
BslI	CCNNNNNNNGG	4 cut(s)	168, 273, 328, 374
BsmAI	GTCTC	1 cut(s)	31
BsnI	GGCC	5 cut(s)	161, 224, 321, 434, 595
Bsp119I	TTCGAA	1 cut(s)	574
Bsp143I	GATC	3 cut(s)	245, 665, 712
Bsp19I	CCATGG	1 cut(s)	373
BspACI	CCGC	3 cut(s)	97, 409, 505
BspANI	GGCC	5 cut(s)	161, 224, 321, 434, 595
BspCNI	CTCAG	2 cut(s)	27, 674
BspFNI	CGCG	1 cut(s)	644
BspHI	TCATGA	1 cut(s)	612
BspLI	GGNNCC	1 cut(s)	480
BspMAI	CTGCAG	1 cut(s)	90
BspMI	ACCTGC	1 cut(s)	269
BspPI	GGATC	1 cut(s)	673
BspT104I	TTCGAA	1 cut(s)	574
BspT107I	GGYRCC	1 cut(s)	478
BsrDI	GCAATG	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	167, 373
BssMI	GATC	3 cut(s)	245, 665, 712
BssT1I	CCWWGG	2 cut(s)	167, 373
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	765
BstAPI	GCANNNNNTGC	2 cut(s)	94, 732
BstBI	TTCGAA	1 cut(s)	574
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	35, 661
BstDSI	CCRYGG	1 cut(s)	373
BstF5I	GGATG	2 cut(s)	135, 339
BstFNI	CGCG	1 cut(s)	644
BstHHI	GCGC	2 cut(s)	102, 646
BstKTI	GATC	3 cut(s)	248, 668, 715
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	3 cut(s)	245, 665, 712
BstMCI	CGRYCG	2 cut(s)	69, 285
BstMWI	GCNNNNNNNGC	6 cut(s)	40, 85, 94, 318, 440, 732
BstNI	CCWGG	1 cut(s)	180
BstSCI	CCNGG	4 cut(s)	46, 138, 178, 624
BstSFI	CTRYAG	1 cut(s)	86
BstUI	CGCG	1 cut(s)	644
Bsu36I	CCTNAGG	1 cut(s)	661
BsuRI	GGCC	5 cut(s)	161, 224, 321, 434, 595
BtgI	CCRYGG	1 cut(s)	373
BtsCI	GGATG	2 cut(s)	135, 339
BveI	ACCTGC	1 cut(s)	269
Cac8I	GCNNGC	1 cut(s)	126
CciI	TCATGA	1 cut(s)	612
CfoI	GCGC	2 cut(s)	102, 646
Cfr13I	GGNCC	1 cut(s)	384
Csp6I	GTAC	3 cut(s)	91, 202, 229
CviAII	CATG	2 cut(s)	374, 613
CviQI	GTAC	3 cut(s)	91, 202, 229
DdeI	CTNAG	2 cut(s)	35, 661
DpnI	GATC	3 cut(s)	247, 667, 714
DpnII	GATC	3 cut(s)	245, 665, 712
EaeI	YGGCCR	1 cut(s)	319
Eco130I	CCWWGG	2 cut(s)	167, 373
Eco147I	AGGCCT	1 cut(s)	595
Eco47I	GGWCC	1 cut(s)	384
Eco57I	CTGAAG	1 cut(s)	193
Eco81I	CCTNAGG	1 cut(s)	661
EcoRI	GAATTC	1 cut(s)	457
EcoRII	CCWGG	1 cut(s)	178
EcoT14I	CCWWGG	2 cut(s)	167, 373
ErhI	CCWWGG	2 cut(s)	167, 373
FaeI	CATG	2 cut(s)	377, 616
FaiI	YATR	6 cut(s)	357, 375, 398, 468, 509, 614
FatI	CATG	2 cut(s)	373, 612
FbaI	TGATCA	1 cut(s)	712
FblI	GTMKAC	1 cut(s)	705
Fnu4HI	GCNGC	2 cut(s)	98, 505
FokI	GGATG	2 cut(s)	122, 346
Fsp4HI	GCNGC	2 cut(s)	98, 505
FspBI	CTAG	3 cut(s)	216, 381, 693
GlaI	GCGC	2 cut(s)	101, 645
GluI	GCNGC	2 cut(s)	98, 505
HaeIII	GGCC	5 cut(s)	161, 224, 321, 434, 595
HapII	CCGG	7 cut(s)	48, 140, 267, 285, 431, 449, 625
HhaI	GCGC	2 cut(s)	102, 646
Hin1II	CATG	2 cut(s)	377, 616
Hin6I	GCGC	2 cut(s)	100, 644
HinP1I	GCGC	2 cut(s)	100, 644
HinfI	GANTC	3 cut(s)	57, 670, 675
HpaII	CCGG	7 cut(s)	48, 140, 267, 285, 431, 449, 625
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	706
Hpy188III	TCNNGA	2 cut(s)	613, 663
Hpy8I	GTNNAC	1 cut(s)	706
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	2 cut(s)	271, 574
HpyCH4III	ACNGT	1 cut(s)	765
HpyCH4V	TGCA	5 cut(s)	88, 156, 312, 400, 735
HpyF10VI	GCNNNNNNNGC	6 cut(s)	40, 85, 94, 318, 440, 732
HpyF3I	CTNAG	2 cut(s)	35, 661
Hsp92II	CATG	2 cut(s)	377, 616
HspAI	GCGC	2 cut(s)	100, 644
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	3 cut(s)	245, 665, 712
LmnI	GCTCC	3 cut(s)	76, 269, 544
MaeI	CTAG	3 cut(s)	216, 381, 693
MaeIII	GTNAC	2 cut(s)	269, 304
MalI	GATC	3 cut(s)	247, 667, 714
MboI	GATC	3 cut(s)	245, 665, 712
MboII	GAAGA	7 cut(s)	34, 199, 349, 529, 595, 645, 768
MfeI	CAATTG	1 cut(s)	490
MlsI	TGGCCA	1 cut(s)	321
MluCI	AATT	5 cut(s)	457, 490, 586, 631, 750
MluNI	TGGCCA	1 cut(s)	321
MlyI	GAGTC	1 cut(s)	679
Mox20I	TGGCCA	1 cut(s)	321
MscI	TGGCCA	1 cut(s)	321
MseI	TTAA	1 cut(s)	749
MslI	CAYNNNNRTG	1 cut(s)	683
Msp20I	TGGCCA	1 cut(s)	321
MspI	CCGG	7 cut(s)	48, 140, 267, 285, 431, 449, 625
MspR9I	CCNGG	4 cut(s)	48, 140, 180, 626
MunI	CAATTG	1 cut(s)	490
MvaI	CCWGG	1 cut(s)	180
MvnI	CGCG	1 cut(s)	644
MwoI	GCNNNNNNNGC	6 cut(s)	40, 85, 94, 318, 440, 732
NciI	CCSGG	3 cut(s)	48, 140, 626
NcoI	CCATGG	1 cut(s)	373
NdeII	GATC	3 cut(s)	245, 665, 712
NlaIII	CATG	2 cut(s)	377, 616
NlaIV	GGNNCC	1 cut(s)	480
NmuCI	GTSAC	1 cut(s)	304
NspV	TTCGAA	1 cut(s)	574
OliI	CACNNNNGTG	1 cut(s)	683
PagI	TCATGA	1 cut(s)	612
PceI	AGGCCT	1 cut(s)	595
PcsI	WCGNNNNNNNCGW	1 cut(s)	254
PfeI	GAWTC	2 cut(s)	57, 675
PflMI	CCANNNNNTGG	1 cut(s)	328
PfoI	TCCNGGA	1 cut(s)	138
PkrI	GCNGC	2 cut(s)	99, 506
PleI	GAGTC	1 cut(s)	678
PpsI	GAGTC	1 cut(s)	678
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	480
PspPI	GGNCC	1 cut(s)	384
PstI	CTGCAG	1 cut(s)	90
RsaI	GTAC	3 cut(s)	92, 203, 230
RsaNI	GTAC	3 cut(s)	91, 202, 229
RseI	CAYNNNNRTG	1 cut(s)	683
SaqAI	TTAA	1 cut(s)	749
SatI	GCNGC	2 cut(s)	98, 505
Sau3AI	GATC	3 cut(s)	245, 665, 712
Sau96I	GGNCC	1 cut(s)	384
ScaI	AGTACT	1 cut(s)	92
SchI	GAGTC	1 cut(s)	679
ScrFI	CCNGG	4 cut(s)	48, 140, 180, 626
SetI	ASST	6 cut(s)	81, 147, 184, 203, 263, 748
SfcI	CTRYAG	1 cut(s)	86
SfuI	TTCGAA	1 cut(s)	574
SinI	GGWCC	1 cut(s)	384
SmiMI	CAYNNNNRTG	1 cut(s)	683
Sse9I	AATT	5 cut(s)	457, 490, 586, 631, 750
SseBI	AGGCCT	1 cut(s)	595
SsiI	CCGC	3 cut(s)	97, 409, 505
SspMI	CTAG	3 cut(s)	216, 381, 693
StuI	AGGCCT	1 cut(s)	595
StyD4I	CCNGG	4 cut(s)	46, 138, 178, 624
StyI	CCWWGG	2 cut(s)	167, 373
TaaI	ACNGT	1 cut(s)	765
TaqI	TCGA	6 cut(s)	55, 147, 248, 574, 668, 673
TaqII	GACCGA	2 cut(s)	83, 401
TasI	AATT	5 cut(s)	457, 490, 586, 631, 750
TatI	WGTACW	1 cut(s)	90
TauI	GCSGC	2 cut(s)	100, 507
TfiI	GAWTC	2 cut(s)	57, 675
Tru1I	TTAA	1 cut(s)	749
Tru9I	TTAA	1 cut(s)	749
TseFI	GTSAC	1 cut(s)	304
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	350, 601
TspGWI	ACGGA	1 cut(s)	732
Van91I	CCANNNNNTGG	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	384
XapI	RAATTY	3 cut(s)	457, 586, 631
XcmI	CCANNNNNNNNNTGG	1 cut(s)	489
XmiI	GTMKAC	1 cut(s)	705
XspI	CTAG	3 cut(s)	216, 381, 693
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.