Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0011761

Physical Location & Seq

Genomic Coordinates Reverse (-)

60561354 .. 60564357

Gene Structure 3004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG291800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAGATTGGGTTTGTGGGTTTAGGTGATTTAGAGCAAGAGAGGTACTTCTTCAGCACTAGGGAGGCCAAGTACCCAAATGGGAACAGATCAAACAGAGCAACAGGTTCTGGGTATTGGAAGGCAACTGGTTTGGACAAGCAAATTGTGGCTTCCAGGGGTAACCAAGTTGTTGGGATGAAGAAGACTTTGGTTTTTTACAGAGGAAAACCTCCACATGGGAGTAGGACCGATTGGATTATGCACGAGTATCGCCTCGTTTTAGCTGAAGATAAAAATAACTCCACCACCCAAAGCCCTGTTCCGGTGAACAATTGGGTTCTTTGCCGCATATTTTTGAAGAAAAGAGGCAGTGGTAAAAACGAGGAAGAACTAGTTCAAGTGCAGGCCTGCAATGTTCACCGAGTGGCGAAAAATCCAAGGATTACTCGGCCTGTTTTCTACGATTTCATGACCAAGGACAGGACCAATTTGAGCCTTGCGCCTTGTTCTTCATCCTCAGGTTCAAGTGGAGTCACAGATGTCGTTTCTACCGAGACAGAGGAGCACGAAGAGAGCAGTAGCTGCAATAGTCTTCCTTTTTTTAGAAGAAAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0097305 GO:0099402 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

199

Amino Acids

22.49

Weight (kDa)

9.43

Isoelectric Point (pI)

48.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	12 - 86	8.8e-26	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13180
fragaria_vesca	FvH4_4g23130
malus_domestica	MD13G1125000.v1.1 MD16G1125800.v1.1
prunus_persica	Prupe.1G220400_v2.0.a1
pyrus_communis	pycom13g10900 pycom16g10690
rosa_chinensis	RchiOBHm_Chr4g0429461
rosa_laevigata	RLG00000007069
rosa_multiflora	Rmu_sc0003708.1_g000017 Rmu_sc0004825.1_g000003 Rmu_sc0004825.1_g000004
rosa_roxburghii	Rroxscaffold_5G00371160
rosa_rugosa	Rorug04G0236200
rosa_samantha	Rh4AG291800 Rh4BG297600 Rh4CG313100 Rh4DG294700
rosa_wichuraiana	Rw4G025270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	328
AcuI	CTGAAG	2 cut(s)	37, 288
AdeI	CACNNNGTG	1 cut(s)	406
AfaI	GTAC	2 cut(s)	47, 74
AfiI	CCNNNNNNNGG	3 cut(s)	218, 304, 462
AgsI	TTSAA	3 cut(s)	340, 380, 507
AhlI	ACTAGT	1 cut(s)	373
AjnI	CCWGG	1 cut(s)	155
AjuI	GAANNNNNNNTTGG	4 cut(s)	173, 205, 285, 317
AluBI	AGCT	2 cut(s)	266, 564
AluI	AGCT	2 cut(s)	266, 564
Alw21I	GWGCWC	1 cut(s)	549
Alw26I	GTCTC	1 cut(s)	530
AlwNI	CAGNNNCTG	2 cut(s)	110, 564
AoxI	GGCC	3 cut(s)	66, 387, 431
ApeKI	GCWGC	1 cut(s)	564
Asp700I	GAANNNNTTC	1 cut(s)	375
AspLEI	GCGC	1 cut(s)	484
AspS9I	GGNCC	2 cut(s)	228, 465
AsuHPI	GGTGA	3 cut(s)	38, 319, 392
AvaII	GGWCC	2 cut(s)	228, 465
AxyI	CCTNAGG	1 cut(s)	499
BauI	CACGAG	1 cut(s)	245
BbsI	GAAGAC	2 cut(s)	191, 566
Bbv12I	GWGCWC	1 cut(s)	549
BbvI	GCAGC	1 cut(s)	551
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	530
BcuI	ACTAGT	1 cut(s)	373
BfaI	CTAG	2 cut(s)	60, 374
BisI	GCNGC	2 cut(s)	328, 565
BlsI	GCNGC	2 cut(s)	329, 566
Bme1390I	CCNGG	1 cut(s)	157
Bme18I	GGWCC	2 cut(s)	228, 465
BmgT120I	GGNCC	2 cut(s)	228, 465
BmrFI	CCNGG	1 cut(s)	157
BpiI	GAAGAC	2 cut(s)	191, 566
BsaJI	CCNNGG	3 cut(s)	156, 419, 456
BsaWI	WCCGGW	1 cut(s)	304
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 56, 86
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 304, 462
Bse1I	ACTGG	1 cut(s)	133
Bse21I	CCTNAGG	1 cut(s)	499
Bse3DI	GCAATG	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	157
BseDI	CCNNGG	3 cut(s)	156, 419, 456
BseGI	GGATG	2 cut(s)	183, 494
BseLI	CCNNNNNNNGG	3 cut(s)	218, 304, 462
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	1 cut(s)	133
BseRI	GAGGAG	1 cut(s)	557
BseXI	GCAGC	1 cut(s)	551
BsgI	GTGCAG	1 cut(s)	404
BshFI	GGCC	3 cut(s)	68, 389, 433
BsiHKAI	GWGCWC	1 cut(s)	549
BsiSI	CCGG	1 cut(s)	305
BslI	CCNNNNNNNGG	3 cut(s)	218, 304, 462
BsmAI	GTCTC	1 cut(s)	530
BsnI	GGCC	3 cut(s)	68, 389, 433
Bsp1286I	GDGCHC	1 cut(s)	549
Bsp143I	GATC	1 cut(s)	89
BspACI	CCGC	1 cut(s)	328
BspANI	GGCC	3 cut(s)	68, 389, 433
BspCNI	CTCAG	1 cut(s)	512
BspHI	TCATGA	1 cut(s)	450
BsrDI	GCAATG	1 cut(s)	400
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	3 cut(s)	156, 419, 456
BssMI	GATC	1 cut(s)	89
BssSI	CACGAG	1 cut(s)	245
BssT1I	CCWWGG	2 cut(s)	419, 456
Bst2BI	CACGAG	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	157
Bst4CI	ACNGT	1 cut(s)	597
Bst6I	CTCTTC	1 cut(s)	546
BstAPI	GCANNNNNTGC	1 cut(s)	564
BstC8I	GCNNGC	2 cut(s)	387, 391
BstDEI	CTNAG	1 cut(s)	499
BstEII	GGTNACC	1 cut(s)	161
BstF5I	GGATG	2 cut(s)	183, 494
BstHHI	GCGC	1 cut(s)	484
BstKTI	GATC	1 cut(s)	92
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	1 cut(s)	564
BstNI	CCWGG	1 cut(s)	157
BstPI	GGTNACC	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	551
BstV2I	GAAGAC	2 cut(s)	191, 566
BstXI	CCANNNNNNTGG	1 cut(s)	173
Bsu36I	CCTNAGG	1 cut(s)	499
BsuRI	GGCC	3 cut(s)	68, 389, 433
BtsCI	GGATG	2 cut(s)	183, 494
BtsI	GCAGTG	1 cut(s)	358
BtsIMutI	CAGTG	1 cut(s)	358
Cac8I	GCNNGC	2 cut(s)	387, 391
CaiI	CAGNNNCTG	2 cut(s)	110, 564
CciI	TCATGA	1 cut(s)	450
CfoI	GCGC	1 cut(s)	484
Cfr13I	GGNCC	2 cut(s)	228, 465
Csp6I	GTAC	2 cut(s)	46, 73
CviAII	CATG	2 cut(s)	218, 451
CviJI	RGCY	8 cut(s)	68, 152, 266, 297, 389, 433, 477, 564
CviKI_1	RGCY	8 cut(s)	68, 152, 266, 297, 389, 433, 477, 564
CviQI	GTAC	2 cut(s)	46, 73
DdeI	CTNAG	1 cut(s)	499
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
DraIII	CACNNNGTG	1 cut(s)	406
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Eco130I	CCWWGG	2 cut(s)	419, 456
Eco147I	AGGCCT	1 cut(s)	389
Eco47I	GGWCC	2 cut(s)	228, 465
Eco57I	CTGAAG	2 cut(s)	37, 288
Eco81I	CCTNAGG	1 cut(s)	499
Eco91I	GGTNACC	1 cut(s)	161
EcoO65I	GGTNACC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	155
EcoT14I	CCWWGG	2 cut(s)	419, 456
ErhI	CCWWGG	2 cut(s)	419, 456
FaeI	CATG	2 cut(s)	221, 454
FaiI	YATR	4 cut(s)	219, 242, 332, 452
FatI	CATG	2 cut(s)	217, 450
Fnu4HI	GCNGC	2 cut(s)	328, 565
FokI	GGATG	2 cut(s)	190, 481
Fsp4HI	GCNGC	2 cut(s)	328, 565
FspBI	CTAG	2 cut(s)	60, 374
GlaI	GCGC	1 cut(s)	483
GluI	GCNGC	2 cut(s)	328, 565
HaeIII	GGCC	3 cut(s)	68, 389, 433
HapII	CCGG	1 cut(s)	305
HhaI	GCGC	1 cut(s)	484
Hin1II	CATG	2 cut(s)	221, 454
Hin6I	GCGC	1 cut(s)	482
HinP1I	GCGC	1 cut(s)	482
HinfI	GANTC	1 cut(s)	513
HpaII	CCGG	1 cut(s)	305
HphI	GGTGA	3 cut(s)	38, 319, 392
Hpy166II	GTNNAC	2 cut(s)	310, 400
Hpy188III	TCNNGA	1 cut(s)	451
Hpy8I	GTNNAC	2 cut(s)	310, 400
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	1 cut(s)	597
HpyCH4V	TGCA	4 cut(s)	244, 385, 393, 567
HpyF10VI	GCNNNNNNNGC	1 cut(s)	564
HpyF3I	CTNAG	1 cut(s)	499
Hsp92II	CATG	2 cut(s)	221, 454
HspAI	GCGC	1 cut(s)	482
Kzo9I	GATC	1 cut(s)	89
LmnI	GCTCC	1 cut(s)	544
Lsp1109I	GCAGC	1 cut(s)	551
MaeI	CTAG	2 cut(s)	60, 374
MaeIII	GTNAC	2 cut(s)	161, 514
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MfeI	CAATTG	1 cut(s)	313
MhlI	GDGCHC	1 cut(s)	549
MluCI	AATT	3 cut(s)	144, 313, 469
MlyI	GAGTC	1 cut(s)	522
MnlI	CCTC	9 cut(s)	36, 58, 197, 222, 266, 341, 358, 508, 535
MroXI	GAANNNNTTC	1 cut(s)	375
MspI	CCGG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	157
MunI	CAATTG	1 cut(s)	313
MvaI	CCWGG	1 cut(s)	157
MwoI	GCNNNNNNNGC	1 cut(s)	564
NdeII	GATC	1 cut(s)	89
NlaIII	CATG	2 cut(s)	221, 454
NmeAIII	GCCGAG	1 cut(s)	409
NmuCI	GTSAC	1 cut(s)	514
PagI	TCATGA	1 cut(s)	450
PceI	AGGCCT	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	1 cut(s)	531
PdmI	GAANNNNTTC	1 cut(s)	375
PkrI	GCNGC	2 cut(s)	329, 566
PleI	GAGTC	1 cut(s)	521
PpsI	GAGTC	1 cut(s)	521
Psp6I	CCWGG	1 cut(s)	155
PspEI	GGTNACC	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	155
PspPI	GGNCC	2 cut(s)	228, 465
PstNI	CAGNNNCTG	2 cut(s)	110, 564
RsaI	GTAC	2 cut(s)	47, 74
RsaNI	GTAC	2 cut(s)	46, 73
SatI	GCNGC	2 cut(s)	328, 565
Sau3AI	GATC	1 cut(s)	89
Sau96I	GGNCC	2 cut(s)	228, 465
SchI	GAGTC	1 cut(s)	522
ScrFI	CCNGG	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	549
SetI	ASST	7 cut(s)	28, 47, 109, 214, 268, 505, 566
SinI	GGWCC	2 cut(s)	228, 465
SpeI	ACTAGT	1 cut(s)	373
Sse9I	AATT	3 cut(s)	144, 313, 469
SseBI	AGGCCT	1 cut(s)	389
SsiI	CCGC	1 cut(s)	328
SspMI	CTAG	2 cut(s)	60, 374
StuI	AGGCCT	1 cut(s)	389
StyD4I	CCNGG	1 cut(s)	155
StyI	CCWWGG	2 cut(s)	419, 456
TaaI	ACNGT	1 cut(s)	597
TaqII	GACCGA	1 cut(s)	245
TasI	AATT	3 cut(s)	144, 313, 469
TauI	GCSGC	1 cut(s)	330
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	1 cut(s)	564
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	3 cut(s)	194, 439, 483
TspRI	CASTG	1 cut(s)	358
VpaK11BI	GGWCC	2 cut(s)	228, 465
XmnI	GAANNNNTTC	1 cut(s)	375
XspI	CTAG	2 cut(s)	60, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.