Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003708.1

Orthogroup ID

OG0011761

Physical Location & Seq

Genomic Coordinates Forward (+)

70628 .. 73261

Gene Structure 2634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003708.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atggagaagctcagttttgtgaggaatggagagctgagattgcctcctggttttcggttccatcctactgacgaagagcttgttcttcagtacttgaagcgcaaggtctactcgtgtcctttgcctgcttccatcatccctgaggttgaagtctgcaagtctgatccttgggatttgccaggtgatttagagcaagagaggtacttcttcagcactagggaggccaagtacccaaatgggaacagatcaaacagagcaacaggttctgggtattggaaggcaactggtttggacaagcaaattgtggcttccaggggtaaccaagttgttgggatgaagaagactttggttttttacagaggaaaacctccacatgggagtaggaccgattggattatgcacgagtatcgcctcgttttagctgaagataaaaataactccaccacccaaagccctgttccggtgaacaattgggttcatcctcaggttcaagtggagtcacagatgtcgtttctaccgagacagaggagcacgaagagagcagtagctgcaataccgtgtcagacgtgcaagaaccacgagcctgcaatagttgcaagaaccacgagccttcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0097305 GO:0099402 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

205

Amino Acids

23.4

Weight (kDa)

9.51

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13180
fragaria_vesca	FvH4_4g23130
malus_domestica	MD13G1125000.v1.1 MD16G1125800.v1.1
prunus_persica	Prupe.1G220400_v2.0.a1
pyrus_communis	pycom13g10900 pycom16g10690
rosa_chinensis	RchiOBHm_Chr4g0429461
rosa_laevigata	RLG00000007069
rosa_multiflora	Rmu_sc0003708.1_g000017 Rmu_sc0004825.1_g000003 Rmu_sc0004825.1_g000004
rosa_roxburghii	Rroxscaffold_5G00371160
rosa_rugosa	Rorug04G0236200
rosa_samantha	Rh4AG291800 Rh4BG297600 Rh4CG313100 Rh4DG294700
rosa_wichuraiana	Rw4G025270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	108
AclWI	GGATC	1 cut(s)	158
AcuI	CTGAAG	3 cut(s)	71, 193, 444
AfaI	GTAC	3 cut(s)	92, 203, 230
AfiI	CCNNNNNNNGG	2 cut(s)	374, 460
AgsI	TTSAA	4 cut(s)	97, 149, 491, 614
AjiI	CACGTC	1 cut(s)	567
AjnI	CCWGG	3 cut(s)	46, 178, 311
AjuI	GAANNNNNNNTTGG	4 cut(s)	329, 361, 441, 473
AluBI	AGCT	5 cut(s)	10, 34, 79, 422, 548
AluI	AGCT	5 cut(s)	10, 34, 79, 422, 548
Alw21I	GWGCWC	1 cut(s)	533
Alw26I	GTCTC	1 cut(s)	514
AlwI	GGATC	1 cut(s)	158
AlwNI	CAGNNNCTG	2 cut(s)	266, 548
AoxI	GGCC	1 cut(s)	222
ApeKI	GCWGC	1 cut(s)	548
AspLEI	GCGC	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	384
AsuHPI	GGTGA	2 cut(s)	194, 475
AvaII	GGWCC	1 cut(s)	384
AxyI	CCTNAGG	2 cut(s)	141, 483
BauI	CACGAG	4 cut(s)	112, 401, 578, 604
BbsI	GAAGAC	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	533
BbvI	GCAGC	1 cut(s)	535
BccI	CCATC	2 cut(s)	69, 140
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciT130I	CCWGG	3 cut(s)	48, 180, 313
BcoDI	GTCTC	1 cut(s)	514
BfaI	CTAG	1 cut(s)	216
BisI	GCNGC	1 cut(s)	549
BlsI	GCNGC	1 cut(s)	550
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	3 cut(s)	48, 180, 313
Bme18I	GGWCC	1 cut(s)	384
BmgBI	CACGTC	1 cut(s)	567
BmgT120I	GGNCC	1 cut(s)	384
BmiI	GGNNCC	1 cut(s)	59
BmrFI	CCNGG	3 cut(s)	48, 180, 313
BpiI	GAAGAC	1 cut(s)	347
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
BsaJI	CCNNGG	2 cut(s)	167, 312
BsaWI	WCCGGW	1 cut(s)	460
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	2 cut(s)	374, 460
Bse1I	ACTGG	1 cut(s)	289
Bse21I	CCTNAGG	2 cut(s)	141, 483
BseBI	CCWGG	3 cut(s)	48, 180, 313
BseDI	CCNNGG	2 cut(s)	167, 312
BseGI	GGATG	4 cut(s)	61, 135, 339, 478
BseLI	CCNNNNNNNGG	2 cut(s)	374, 460
BseMII	CTCAG	4 cut(s)	25, 26, 132, 497
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	1 cut(s)	541
BseXI	GCAGC	1 cut(s)	535
BshFI	GGCC	1 cut(s)	224
BsiHKAI	GWGCWC	1 cut(s)	533
BsiSI	CCGG	1 cut(s)	461
BslI	CCNNNNNNNGG	2 cut(s)	374, 460
BsmAI	GTCTC	1 cut(s)	514
BsnI	GGCC	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	533
Bsp143I	GATC	2 cut(s)	163, 245
BspANI	GGCC	1 cut(s)	224
BspCNI	CTCAG	4 cut(s)	24, 27, 133, 496
BspLI	GGNNCC	1 cut(s)	59
BspPI	GGATC	1 cut(s)	158
BspQI	GCTCTTC	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	167, 312
BssMI	GATC	2 cut(s)	163, 245
BssSI	CACGAG	4 cut(s)	112, 401, 578, 604
BssT1I	CCWWGG	1 cut(s)	167
Bst2BI	CACGAG	4 cut(s)	112, 401, 578, 604
Bst2UI	CCWGG	3 cut(s)	48, 180, 313
Bst4CI	ACNGT	1 cut(s)	558
Bst6I	CTCTTC	2 cut(s)	69, 530
BstAPI	GCANNNNNTGC	2 cut(s)	548, 593
BstC8I	GCNNGC	2 cut(s)	126, 585
BstDEI	CTNAG	4 cut(s)	11, 35, 141, 483
BstEII	GGTNACC	1 cut(s)	317
BstF5I	GGATG	4 cut(s)	61, 135, 339, 478
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	2 cut(s)	166, 248
BstMAI	GTCTC	1 cut(s)	514
BstMBI	GATC	2 cut(s)	163, 245
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 548, 593
BstNI	CCWGG	3 cut(s)	48, 180, 313
BstPI	GGTNACC	1 cut(s)	317
BstSCI	CCNGG	3 cut(s)	46, 178, 311
BstV1I	GCAGC	1 cut(s)	535
BstV2I	GAAGAC	1 cut(s)	347
BstXI	CCANNNNNNTGG	1 cut(s)	329
Bsu36I	CCTNAGG	2 cut(s)	141, 483
BsuRI	GGCC	1 cut(s)	224
BtrI	CACGTC	1 cut(s)	567
BtsCI	GGATG	4 cut(s)	61, 135, 339, 478
Cac8I	GCNNGC	2 cut(s)	126, 585
CaiI	CAGNNNCTG	2 cut(s)	266, 548
CfoI	GCGC	1 cut(s)	102
Cfr13I	GGNCC	1 cut(s)	384
Csp6I	GTAC	3 cut(s)	91, 202, 229
CviAII	CATG	1 cut(s)	374
CviQI	GTAC	3 cut(s)	91, 202, 229
DdeI	CTNAG	4 cut(s)	11, 35, 141, 483
DpnI	GATC	2 cut(s)	165, 247
DpnII	GATC	2 cut(s)	163, 245
Eam1104I	CTCTTC	2 cut(s)	69, 530
EarI	CTCTTC	2 cut(s)	69, 530
Eco130I	CCWWGG	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	384
Eco57I	CTGAAG	3 cut(s)	71, 193, 444
Eco81I	CCTNAGG	2 cut(s)	141, 483
Eco91I	GGTNACC	1 cut(s)	317
EcoO65I	GGTNACC	1 cut(s)	317
EcoRII	CCWGG	3 cut(s)	46, 178, 311
EcoT14I	CCWWGG	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	167
FaeI	CATG	1 cut(s)	377
FaiI	YATR	2 cut(s)	375, 398
FatI	CATG	1 cut(s)	373
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	549
FokI	GGATG	4 cut(s)	48, 122, 346, 465
Fsp4HI	GCNGC	1 cut(s)	549
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	1 cut(s)	549
HaeIII	GGCC	1 cut(s)	224
HapII	CCGG	1 cut(s)	461
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	377
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HinfI	GANTC	1 cut(s)	497
HpaII	CCGG	1 cut(s)	461
HphI	GGTGA	2 cut(s)	194, 475
Hpy166II	GTNNAC	2 cut(s)	109, 466
Hpy188I	TCNGA	2 cut(s)	163, 564
Hpy8I	GTNNAC	2 cut(s)	109, 466
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	558
HpyCH4IV	ACGT	1 cut(s)	566
HpyCH4V	TGCA	6 cut(s)	156, 400, 551, 570, 587, 596
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 548, 593
HpyF3I	CTNAG	4 cut(s)	11, 35, 141, 483
HpySE526I	ACGT	1 cut(s)	566
Hsp92II	CATG	1 cut(s)	377
HspAI	GCGC	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	163, 245
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	528
Lsp1109I	GCAGC	1 cut(s)	535
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	1 cut(s)	566
MaeIII	GTNAC	2 cut(s)	317, 498
MalI	GATC	2 cut(s)	165, 247
MboI	GATC	2 cut(s)	163, 245
MboII	GAAGA	7 cut(s)	77, 86, 199, 349, 352, 437, 547
MfeI	CAATTG	1 cut(s)	469
MhlI	GDGCHC	1 cut(s)	533
MluCI	AATT	2 cut(s)	300, 469
MlyI	GAGTC	1 cut(s)	506
MspI	CCGG	1 cut(s)	461
MspR9I	CCNGG	3 cut(s)	48, 180, 313
MunI	CAATTG	1 cut(s)	469
MvaI	CCWGG	3 cut(s)	48, 180, 313
MwoI	GCNNNNNNNGC	3 cut(s)	40, 548, 593
NdeII	GATC	2 cut(s)	163, 245
NlaIII	CATG	1 cut(s)	377
NlaIV	GGNNCC	1 cut(s)	59
NmuCI	GTSAC	1 cut(s)	498
PciSI	GCTCTTC	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	1 cut(s)	515
PkrI	GCNGC	1 cut(s)	550
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
Psp6I	CCWGG	3 cut(s)	46, 178, 311
PspEI	GGTNACC	1 cut(s)	317
PspGI	CCWGG	3 cut(s)	46, 178, 311
PspN4I	GGNNCC	1 cut(s)	59
PspPI	GGNCC	1 cut(s)	384
PstNI	CAGNNNCTG	2 cut(s)	266, 548
RsaI	GTAC	3 cut(s)	92, 203, 230
RsaNI	GTAC	3 cut(s)	91, 202, 229
SapI	GCTCTTC	1 cut(s)	69
SatI	GCNGC	1 cut(s)	549
Sau3AI	GATC	2 cut(s)	163, 245
Sau96I	GGNCC	1 cut(s)	384
ScaI	AGTACT	1 cut(s)	92
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	3 cut(s)	48, 180, 313
SduI	GDGCHC	1 cut(s)	533
SinI	GGWCC	1 cut(s)	384
Sse9I	AATT	2 cut(s)	300, 469
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	3 cut(s)	46, 178, 311
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	558
TaiI	ACGT	1 cut(s)	569
TaqII	GACCGA	1 cut(s)	401
TasI	AATT	2 cut(s)	300, 469
TatI	WGTACW	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	498
TseI	GCWGC	1 cut(s)	548
Tsp45I	GTSAC	1 cut(s)	498
TspDTI	ATGAA	2 cut(s)	350, 467
VpaK11BI	GGWCC	1 cut(s)	384
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	1 cut(s)	216
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.