Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0011761

Physical Location & Seq

Genomic Coordinates Forward (+)

9127788 .. 9129766

Gene Structure 1979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1125800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGAGAGGATTAATTTTGTGAAGAATGGTGTGCTGAGATTGCCTCCCGGTTTTCGATTCCACCCGACGGACGAGGAGCTTGTTCTACAGTACTTGCGGCGCAAGGTTTACTCCTGCCCCTTGCCTGCCTCCATCATCCCGGAGGTTGATGTCTGTAAGGCCGACCCTTGGGATTTGCCAGATGGCTTGAAATGGAGCTCGAAAATCGCTACTATAAAGAAATTAGATGGAGAATTGAAAGACTCAATTGGTTTGTTTTGTTTTGGTTTAGGTGATTGTGCGCAAGAGAGGTACTTCTTCAGCACTAGGGAGGCCAAGTACCCCAATGGGAACCGATCGAACAGAGCGACGAGCTCTGGTTACTGGAAGGCGACCGGATTGGACAAGCAGATTGTGACTTGCAGGGGCGGCCAAGTCGTGGGGATGAAGAAAACTCTGGTTTTTTATAGAGGAAAGCCTCCCCATGGCACTAGGACCGATTGGATTATGCACGAATACCGCTTTGTTTTGCCCGAAAATCCGGCCTCCATTGCCCCACCGGAAAAGAATGCAACCCAAAGCCCTGTGGTGCCAATGGACGACTGGGTTCTTTGCCGCATATTTTTTAAGAAAAGGGGAGGCAAAAATGAGGAGCAGCAAGTTCAACAGCCCTCCTGCGATGTTCGAAAACCCAAGAACTCGAGGCCTGTTTTCTACGATTTCATGACGAAAGACAGGGCAAATTTGAGCCTTGCACCTTGTTCTTCCTCCTCAGGGTCGAGTGGAATCACAGATGTGGTTTCTAGTGAGCAAGTAGACAATGATCACGAAGAAAGCAGTAGTTCCAATAGTTTAGGTTTAATTAGAAGAAAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0097305 GO:0099402 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

286

Amino Acids

32.13

Weight (kDa)

9.11

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	15 - 167	2.5e-42	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13180
fragaria_vesca	FvH4_4g23130
malus_domestica	MD13G1125000.v1.1 MD16G1125800.v1.1
prunus_persica	Prupe.1G220400_v2.0.a1
pyrus_communis	pycom13g10900 pycom16g10690
rosa_chinensis	RchiOBHm_Chr4g0429461
rosa_laevigata	RLG00000007069
rosa_multiflora	Rmu_sc0003708.1_g000017 Rmu_sc0004825.1_g000003 Rmu_sc0004825.1_g000004
rosa_roxburghii	Rroxscaffold_5G00371160
rosa_rugosa	Rorug04G0236200
rosa_samantha	Rh4AG291800 Rh4BG297600 Rh4CG313100 Rh4DG294700
rosa_wichuraiana	Rw4G025270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	282
AccB1I	GGYRCC	1 cut(s)	568
AccB7I	CCANNNNNTGG	1 cut(s)	418
AccI	GTMKAC	1 cut(s)	795
AciI	CCGC	4 cut(s)	97, 408, 499, 595
AcoI	YGGCCR	1 cut(s)	409
AcsI	RAATTY	1 cut(s)	721
AcuI	CTGAAG	1 cut(s)	283
AfaI	GTAC	3 cut(s)	92, 293, 320
AfiI	CCNNNNNNNGG	5 cut(s)	67, 168, 418, 464, 753
AgsI	TTSAA	3 cut(s)	190, 238, 644
AleI	CACNNNNGTG	1 cut(s)	773
AluBI	AGCT	3 cut(s)	79, 198, 354
AluI	AGCT	3 cut(s)	79, 198, 354
Alw21I	GWGCWC	2 cut(s)	200, 356
Ama87I	CYCGRG	1 cut(s)	679
AoxI	GGCC	5 cut(s)	159, 312, 409, 522, 683
ApeKI	GCWGC	1 cut(s)	634
ApoI	RAATTY	1 cut(s)	721
AseI	ATTAAT	1 cut(s)	12
AspLEI	GCGC	2 cut(s)	102, 283
AspS9I	GGNCC	1 cut(s)	474
AsuC2I	CCSGG	2 cut(s)	48, 140
AsuHPI	GGTGA	1 cut(s)	284
AsuII	TTCGAA	1 cut(s)	664
AvaI	CYCGRG	1 cut(s)	679
AvaII	GGWCC	1 cut(s)	474
AxyI	CCTNAGG	1 cut(s)	751
BanI	GGYRCC	1 cut(s)	568
BanII	GRGCYC	2 cut(s)	200, 356
Bbv12I	GWGCWC	2 cut(s)	200, 356
BbvI	GCAGC	1 cut(s)	646
BccI	CCATC	3 cut(s)	140, 176, 221
BclI	TGATCA	1 cut(s)	802
BcnI	CCSGG	2 cut(s)	48, 140
BfaI	CTAG	3 cut(s)	306, 471, 783
BfmI	CTRYAG	1 cut(s)	86
BisI	GCNGC	4 cut(s)	98, 409, 595, 635
BlsI	GCNGC	4 cut(s)	99, 410, 596, 636
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	2 cut(s)	48, 140
Bme18I	GGWCC	1 cut(s)	474
BmeT110I	CYCGRG	1 cut(s)	679
BmgT120I	GGNCC	1 cut(s)	474
BmiI	GGNNCC	2 cut(s)	332, 570
BmrFI	CCNGG	2 cut(s)	48, 140
BmrI	ACTGGG	1 cut(s)	592
BmuI	ACTGGG	1 cut(s)	592
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
Bpu14I	TTCGAA	1 cut(s)	664
BpuMI	CCSGG	2 cut(s)	48, 140
BsaJI	CCNNGG	2 cut(s)	167, 463
BsaWI	WCCGGW	2 cut(s)	374, 538
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bsc4I	CCNNNNNNNGG	5 cut(s)	67, 168, 418, 464, 753
Bse1I	ACTGG	2 cut(s)	368, 587
Bse21I	CCTNAGG	1 cut(s)	751
Bse3DI	GCAATG	1 cut(s)	528
BseDI	CCNNGG	2 cut(s)	167, 463
BseGI	GGATG	2 cut(s)	135, 429
BseLI	CCNNNNNNNGG	5 cut(s)	67, 168, 418, 464, 753
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	2 cut(s)	26, 765
BseNI	ACTGG	2 cut(s)	368, 587
BseRI	GAGGAG	3 cut(s)	89, 644, 739
BseXI	GCAGC	1 cut(s)	646
Bsh1285I	CGRYCG	2 cut(s)	338, 375
BshFI	GGCC	5 cut(s)	161, 314, 411, 524, 685
BshNI	GGYRCC	1 cut(s)	568
BsiEI	CGRYCG	2 cut(s)	338, 375
BsiHKAI	GWGCWC	2 cut(s)	200, 356
BsiHKCI	CYCGRG	1 cut(s)	679
BsiSI	CCGG	5 cut(s)	48, 140, 375, 521, 539
BslI	CCNNNNNNNGG	5 cut(s)	67, 168, 418, 464, 753
BsmI	GAATGC	1 cut(s)	553
BsnI	GGCC	5 cut(s)	161, 314, 411, 524, 685
BsoBI	CYCGRG	1 cut(s)	679
Bsp119I	TTCGAA	1 cut(s)	664
Bsp1286I	GDGCHC	2 cut(s)	200, 356
Bsp143I	GATC	2 cut(s)	335, 802
Bsp19I	CCATGG	1 cut(s)	463
BspACI	CCGC	4 cut(s)	97, 408, 499, 595
BspANI	GGCC	5 cut(s)	161, 314, 411, 524, 685
BspCNI	CTCAG	2 cut(s)	27, 764
BspHI	TCATGA	1 cut(s)	702
BspLI	GGNNCC	2 cut(s)	332, 570
BspT104I	TTCGAA	1 cut(s)	664
BspT107I	GGYRCC	1 cut(s)	568
BsrDI	GCAATG	1 cut(s)	528
BsrI	ACTGG	2 cut(s)	368, 587
BssECI	CCNNGG	2 cut(s)	167, 463
BssMI	GATC	2 cut(s)	335, 802
BssT1I	CCWWGG	2 cut(s)	167, 463
Bst4CI	ACNGT	2 cut(s)	90, 855
BstBI	TTCGAA	1 cut(s)	664
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	35, 751
BstDSI	CCRYGG	1 cut(s)	463
BstF5I	GGATG	2 cut(s)	135, 429
BstHHI	GCGC	2 cut(s)	102, 283
BstKTI	GATC	2 cut(s)	338, 805
BstMBI	GATC	2 cut(s)	335, 802
BstMCI	CGRYCG	2 cut(s)	338, 375
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 408, 530
BstSCI	CCNGG	2 cut(s)	46, 138
BstSFI	CTRYAG	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	646
Bsu36I	CCTNAGG	1 cut(s)	751
BsuRI	GGCC	5 cut(s)	161, 314, 411, 524, 685
BtgI	CCRYGG	1 cut(s)	463
BtgZI	GCGATG	1 cut(s)	672
BtsCI	GGATG	2 cut(s)	135, 429
Cac8I	GCNNGC	1 cut(s)	126
CciI	TCATGA	1 cut(s)	702
CfoI	GCGC	2 cut(s)	102, 283
Cfr13I	GGNCC	1 cut(s)	474
Csp6I	GTAC	3 cut(s)	91, 292, 319
CviAII	CATG	2 cut(s)	464, 703
CviQI	GTAC	3 cut(s)	91, 292, 319
DdeI	CTNAG	2 cut(s)	35, 751
DpnI	GATC	2 cut(s)	337, 804
DpnII	GATC	2 cut(s)	335, 802
EaeI	YGGCCR	1 cut(s)	409
Ecl136II	GAGCTC	2 cut(s)	198, 354
Eco130I	CCWWGG	2 cut(s)	167, 463
Eco147I	AGGCCT	1 cut(s)	685
Eco24I	GRGCYC	2 cut(s)	200, 356
Eco47I	GGWCC	1 cut(s)	474
Eco53kI	GAGCTC	2 cut(s)	198, 354
Eco57I	CTGAAG	1 cut(s)	283
Eco81I	CCTNAGG	1 cut(s)	751
Eco88I	CYCGRG	1 cut(s)	679
EcoICRI	GAGCTC	2 cut(s)	198, 354
EcoT14I	CCWWGG	2 cut(s)	167, 463
EcoT38I	GRGCYC	2 cut(s)	200, 356
ErhI	CCWWGG	2 cut(s)	167, 463
FaeI	CATG	2 cut(s)	467, 706
FaiI	YATR	6 cut(s)	215, 447, 465, 488, 599, 704
FatI	CATG	2 cut(s)	463, 702
FbaI	TGATCA	1 cut(s)	802
FblI	GTMKAC	1 cut(s)	795
Fnu4HI	GCNGC	4 cut(s)	98, 409, 595, 635
FokI	GGATG	2 cut(s)	122, 436
FriOI	GRGCYC	2 cut(s)	200, 356
Fsp4HI	GCNGC	4 cut(s)	98, 409, 595, 635
FspBI	CTAG	3 cut(s)	306, 471, 783
FspI	TGCGCA	1 cut(s)	282
GlaI	GCGC	2 cut(s)	101, 282
GluI	GCNGC	4 cut(s)	98, 409, 595, 635
HaeIII	GGCC	5 cut(s)	161, 314, 411, 524, 685
HapII	CCGG	5 cut(s)	48, 140, 375, 521, 539
HhaI	GCGC	2 cut(s)	102, 283
Hin1II	CATG	2 cut(s)	467, 706
Hin6I	GCGC	2 cut(s)	100, 281
HinP1I	GCGC	2 cut(s)	100, 281
HinfI	GANTC	3 cut(s)	57, 242, 765
HpaII	CCGG	5 cut(s)	48, 140, 375, 521, 539
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	2 cut(s)	109, 796
Hpy188III	TCNNGA	2 cut(s)	703, 806
Hpy8I	GTNNAC	2 cut(s)	109, 796
Hpy99I	CGWCG	2 cut(s)	70, 352
HpyAV	CCTTC	1 cut(s)	361
HpyCH4III	ACNGT	2 cut(s)	90, 855
HpyCH4V	TGCA	4 cut(s)	402, 490, 551, 734
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 408, 530
HpyF3I	CTNAG	2 cut(s)	35, 751
Hsp92II	CATG	2 cut(s)	467, 706
HspAI	GCGC	2 cut(s)	100, 281
Ksp22I	TGATCA	1 cut(s)	802
Kzo9I	GATC	2 cut(s)	335, 802
LmnI	GCTCC	3 cut(s)	76, 195, 631
Lsp1109I	GCAGC	1 cut(s)	646
MaeI	CTAG	3 cut(s)	306, 471, 783
MaeIII	GTNAC	2 cut(s)	359, 394
MalI	GATC	2 cut(s)	337, 804
MboI	GATC	2 cut(s)	335, 802
MboII	GAAGA	6 cut(s)	34, 289, 439, 735, 821, 858
MfeI	CAATTG	1 cut(s)	246
MhlI	GDGCHC	2 cut(s)	200, 356
MluCI	AATT	6 cut(s)	13, 221, 233, 246, 721, 840
MlyI	GAGTC	1 cut(s)	236
MseI	TTAA	3 cut(s)	12, 606, 839
MslI	CAYNNNNRTG	1 cut(s)	773
MspI	CCGG	5 cut(s)	48, 140, 375, 521, 539
MspR9I	CCNGG	2 cut(s)	48, 140
MunI	CAATTG	1 cut(s)	246
Mva1269I	GAATGC	1 cut(s)	553
MwoI	GCNNNNNNNGC	3 cut(s)	40, 408, 530
NciI	CCSGG	2 cut(s)	48, 140
NcoI	CCATGG	1 cut(s)	463
NdeII	GATC	2 cut(s)	335, 802
NlaIII	CATG	2 cut(s)	467, 706
NlaIV	GGNNCC	2 cut(s)	332, 570
NmuCI	GTSAC	1 cut(s)	394
NsbI	TGCGCA	1 cut(s)	282
NspV	TTCGAA	1 cut(s)	664
OliI	CACNNNNGTG	1 cut(s)	773
PaeR7I	CTCGAG	1 cut(s)	679
PagI	TCATGA	1 cut(s)	702
PceI	AGGCCT	1 cut(s)	685
PcsI	WCGNNNNNNNCGW	1 cut(s)	344
PctI	GAATGC	1 cut(s)	553
PfeI	GAWTC	2 cut(s)	57, 765
PflMI	CCANNNNNTGG	1 cut(s)	418
PfoI	TCCNGGA	1 cut(s)	138
PkrI	GCNGC	4 cut(s)	99, 410, 596, 636
Ple19I	CGATCG	1 cut(s)	338
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
PshBI	ATTAAT	1 cut(s)	12
Psp124BI	GAGCTC	2 cut(s)	200, 356
PspN4I	GGNNCC	2 cut(s)	332, 570
PspPI	GGNCC	1 cut(s)	474
PspXI	VCTCGAGB	1 cut(s)	679
PvuI	CGATCG	1 cut(s)	338
RsaI	GTAC	3 cut(s)	92, 293, 320
RsaNI	GTAC	3 cut(s)	91, 292, 319
RseI	CAYNNNNRTG	1 cut(s)	773
SacI	GAGCTC	2 cut(s)	200, 356
SaqAI	TTAA	3 cut(s)	12, 606, 839
SatI	GCNGC	4 cut(s)	98, 409, 595, 635
Sau3AI	GATC	2 cut(s)	335, 802
Sau96I	GGNCC	1 cut(s)	474
ScaI	AGTACT	1 cut(s)	92
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	2 cut(s)	48, 140
SduI	GDGCHC	2 cut(s)	200, 356
SetI	ASST	9 cut(s)	81, 108, 147, 200, 274, 293, 356, 739, 838
SfcI	CTRYAG	1 cut(s)	86
Sfr274I	CTCGAG	1 cut(s)	679
SfuI	TTCGAA	1 cut(s)	664
SinI	GGWCC	1 cut(s)	474
SlaI	CTCGAG	1 cut(s)	679
SmiMI	CAYNNNNRTG	1 cut(s)	773
SmlI	CTYRAG	1 cut(s)	679
SmoI	CTYRAG	1 cut(s)	679
Sse9I	AATT	6 cut(s)	13, 221, 233, 246, 721, 840
SseBI	AGGCCT	1 cut(s)	685
SsiI	CCGC	4 cut(s)	97, 408, 499, 595
SspMI	CTAG	3 cut(s)	306, 471, 783
SstI	GAGCTC	2 cut(s)	200, 356
StuI	AGGCCT	1 cut(s)	685
StyD4I	CCNGG	2 cut(s)	46, 138
StyI	CCWWGG	2 cut(s)	167, 463
TaaI	ACNGT	2 cut(s)	90, 855
TaqI	TCGA	6 cut(s)	55, 200, 338, 664, 680, 758
TaqII	GACCGA	1 cut(s)	491
TasI	AATT	6 cut(s)	13, 221, 233, 246, 721, 840
TatI	WGTACW	1 cut(s)	90
TauI	GCSGC	3 cut(s)	100, 411, 597
TfiI	GAWTC	2 cut(s)	57, 765
Tru1I	TTAA	3 cut(s)	12, 606, 839
Tru9I	TTAA	3 cut(s)	12, 606, 839
TseFI	GTSAC	1 cut(s)	394
TseI	GCWGC	1 cut(s)	634
Tsp45I	GTSAC	1 cut(s)	394
TspDTI	ATGAA	2 cut(s)	440, 691
TspGWI	ACGGA	1 cut(s)	83
Van91I	CCANNNNNTGG	1 cut(s)	418
VpaK11BI	GGWCC	1 cut(s)	474
VspI	ATTAAT	1 cut(s)	12
XapI	RAATTY	1 cut(s)	721
XcmI	CCANNNNNNNNNTGG	1 cut(s)	579
XhoI	CTCGAG	1 cut(s)	679
XmiI	GTMKAC	1 cut(s)	795
XspI	CTAG	3 cut(s)	306, 471, 783
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.