Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0011761

Physical Location & Seq

Genomic Coordinates Reverse (-)

51635993 .. 51639028

Gene Structure 3036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG294700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGAGAAGCTCAGTTTTGTGAGGAATGGAGAGCTGAGATTGCCTCCTGGTTTTCGGTTCCATCCTACTGACGAAGAGCTTGTTCTTCAGTACTTGAAGCGCAAGGTCTACTCGTGTCCATTGCCTGCTTCCATCATCCCTGAGGTTGAAGTCTGCAAGTCTGATCCTTGGGATTTGCCAGGTGATTTAGAGCAAGAGAGGTACTTCTTCAGCACTAGGGAGGCCAAGTACCCAAATGGGAACAGATCAAACAGAGCAACAGGTTCTGGGTATTGGAAGGCAACTGGTTTGGACAAGCAAATTGTGGCTTCCAGGGGTAACCAAGTTGTTGGGATGAAGAAGACTTTGGTTTTTTACAGAGGAAAACCTCCACATGGGAGTAGGACCGATTGGATTATGCACGAGTATCGCCTCGTTTTAGCTGAAGATAAAAATAACTCCACCACCCAAGTGAGTTCAAAATTTTACGGCATACCAAATTCGAGCAAAATCCCATTTCAAACACTGTTGTTAATGTTTGCTAATAGTTGTTTTCATCTGTTGTTGCAGAGCCCTGTTCCGGTGAACAATTGGGTTCTTTGCCGCATATTTTTGAAGAAAAGAGGCAGTGGTAAAAACGAGGAAGAACTAGTTCAAGTGCAGGCCTGCAATGTTGACCGAGCGGCGAAAAATCCAAGGATTACTCGGCCTGTTTTCTACGATTTCATGACCAAGGACAGGACCAATTTGAGCCTTGCGCCTTGTTCTTCATCCTCAGGTTCAAGTGGAGTCACAGATGTCGTTTCTACCGAGACAGAGGAGCACGAAGAGAGCAGTAGCTGCAATAGTCTTCCTTTTTTTAGAAGAAAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0097305 GO:0099402 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

284

Amino Acids

32.29

Weight (kDa)

9.19

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	15 - 138	2.4e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13180
fragaria_vesca	FvH4_4g23130
malus_domestica	MD13G1125000.v1.1 MD16G1125800.v1.1
prunus_persica	Prupe.1G220400_v2.0.a1
pyrus_communis	pycom13g10900 pycom16g10690
rosa_chinensis	RchiOBHm_Chr4g0429461
rosa_laevigata	RLG00000007069
rosa_multiflora	Rmu_sc0003708.1_g000017 Rmu_sc0004825.1_g000003 Rmu_sc0004825.1_g000004
rosa_roxburghii	Rroxscaffold_5G00371160
rosa_rugosa	Rorug04G0236200
rosa_samantha	Rh4AG291800 Rh4BG297600 Rh4CG313100 Rh4DG294700
rosa_wichuraiana	Rw4G025270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	662
AccI	GTMKAC	1 cut(s)	108
AciI	CCGC	2 cut(s)	583, 662
AclWI	GGATC	1 cut(s)	158
AcsI	RAATTY	2 cut(s)	461, 478
AcuI	CTGAAG	3 cut(s)	71, 193, 444
AfaI	GTAC	3 cut(s)	92, 203, 230
AfiI	CCNNNNNNNGG	3 cut(s)	374, 559, 717
AgsI	TTSAA	7 cut(s)	97, 149, 459, 500, 595, 635, 762
AhlI	ACTAGT	1 cut(s)	628
AjnI	CCWGG	3 cut(s)	46, 178, 311
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AleI	CACNNNNGTG	1 cut(s)	449
AluBI	AGCT	5 cut(s)	10, 34, 79, 422, 819
AluI	AGCT	5 cut(s)	10, 34, 79, 422, 819
Alw21I	GWGCWC	1 cut(s)	804
Alw26I	GTCTC	1 cut(s)	785
AlwI	GGATC	1 cut(s)	158
AlwNI	CAGNNNCTG	2 cut(s)	266, 819
AoxI	GGCC	3 cut(s)	222, 642, 686
ApeKI	GCWGC	1 cut(s)	819
ApoI	RAATTY	2 cut(s)	461, 478
Asp700I	GAANNNNTTC	1 cut(s)	630
AspLEI	GCGC	2 cut(s)	102, 739
AspS9I	GGNCC	2 cut(s)	384, 720
AsuHPI	GGTGA	2 cut(s)	194, 574
AvaII	GGWCC	2 cut(s)	384, 720
AxyI	CCTNAGG	2 cut(s)	141, 754
BanII	GRGCYC	1 cut(s)	554
BauI	CACGAG	2 cut(s)	112, 401
BbsI	GAAGAC	2 cut(s)	347, 821
Bbv12I	GWGCWC	1 cut(s)	804
BbvI	GCAGC	1 cut(s)	806
BccI	CCATC	2 cut(s)	69, 140
BceAI	ACGGC	1 cut(s)	484
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciT130I	CCWGG	3 cut(s)	48, 180, 313
BcoDI	GTCTC	1 cut(s)	785
BcuI	ACTAGT	1 cut(s)	628
BfaI	CTAG	2 cut(s)	216, 629
BisI	GCNGC	3 cut(s)	583, 663, 820
BlsI	GCNGC	3 cut(s)	584, 664, 821
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	3 cut(s)	48, 180, 313
Bme18I	GGWCC	2 cut(s)	384, 720
BmgT120I	GGNCC	2 cut(s)	384, 720
BmiI	GGNNCC	1 cut(s)	59
BmrFI	CCNGG	3 cut(s)	48, 180, 313
BpiI	GAAGAC	2 cut(s)	347, 821
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
BsaJI	CCNNGG	4 cut(s)	167, 312, 674, 711
BsaWI	WCCGGW	1 cut(s)	559
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	3 cut(s)	374, 559, 717
Bse1I	ACTGG	1 cut(s)	289
Bse21I	CCTNAGG	2 cut(s)	141, 754
Bse3DI	GCAATG	2 cut(s)	119, 655
BseBI	CCWGG	3 cut(s)	48, 180, 313
BseDI	CCNNGG	4 cut(s)	167, 312, 674, 711
BseGI	GGATG	4 cut(s)	61, 135, 339, 749
BseLI	CCNNNNNNNGG	3 cut(s)	374, 559, 717
BseMI	GCAATG	2 cut(s)	119, 655
BseMII	CTCAG	4 cut(s)	25, 26, 132, 768
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	1 cut(s)	812
BseXI	GCAGC	1 cut(s)	806
BsgI	GTGCAG	1 cut(s)	659
BshFI	GGCC	3 cut(s)	224, 644, 688
BsiHKAI	GWGCWC	1 cut(s)	804
BsiSI	CCGG	1 cut(s)	560
BslI	CCNNNNNNNGG	3 cut(s)	374, 559, 717
BsmAI	GTCTC	1 cut(s)	785
BsnI	GGCC	3 cut(s)	224, 644, 688
Bsp1286I	GDGCHC	2 cut(s)	554, 804
Bsp143I	GATC	2 cut(s)	163, 245
BspACI	CCGC	2 cut(s)	583, 662
BspANI	GGCC	3 cut(s)	224, 644, 688
BspCNI	CTCAG	4 cut(s)	24, 27, 133, 767
BspHI	TCATGA	1 cut(s)	705
BspLI	GGNNCC	1 cut(s)	59
BspPI	GGATC	1 cut(s)	158
BspQI	GCTCTTC	1 cut(s)	69
BsrBI	CCGCTC	1 cut(s)	662
BsrDI	GCAATG	2 cut(s)	119, 655
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	4 cut(s)	167, 312, 674, 711
BssMI	GATC	2 cut(s)	163, 245
BssSI	CACGAG	2 cut(s)	112, 401
BssT1I	CCWWGG	3 cut(s)	167, 674, 711
Bst2BI	CACGAG	2 cut(s)	112, 401
Bst2UI	CCWGG	3 cut(s)	48, 180, 313
Bst4CI	ACNGT	2 cut(s)	507, 852
Bst6I	CTCTTC	2 cut(s)	69, 801
BstAPI	GCANNNNNTGC	1 cut(s)	819
BstC8I	GCNNGC	3 cut(s)	126, 642, 646
BstDEI	CTNAG	4 cut(s)	11, 35, 141, 754
BstEII	GGTNACC	1 cut(s)	317
BstF5I	GGATG	4 cut(s)	61, 135, 339, 749
BstHHI	GCGC	2 cut(s)	102, 739
BstKTI	GATC	2 cut(s)	166, 248
BstMAI	GTCTC	1 cut(s)	785
BstMBI	GATC	2 cut(s)	163, 245
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 819
BstNI	CCWGG	3 cut(s)	48, 180, 313
BstPI	GGTNACC	1 cut(s)	317
BstSCI	CCNGG	3 cut(s)	46, 178, 311
BstV1I	GCAGC	1 cut(s)	806
BstV2I	GAAGAC	2 cut(s)	347, 821
BstXI	CCANNNNNNTGG	1 cut(s)	329
Bsu36I	CCTNAGG	2 cut(s)	141, 754
BsuRI	GGCC	3 cut(s)	224, 644, 688
BtsCI	GGATG	4 cut(s)	61, 135, 339, 749
BtsI	GCAGTG	1 cut(s)	613
BtsIMutI	CAGTG	2 cut(s)	503, 613
Cac8I	GCNNGC	3 cut(s)	126, 642, 646
CaiI	CAGNNNCTG	2 cut(s)	266, 819
CciI	TCATGA	1 cut(s)	705
CfoI	GCGC	2 cut(s)	102, 739
Cfr13I	GGNCC	2 cut(s)	384, 720
Csp6I	GTAC	3 cut(s)	91, 202, 229
CviAII	CATG	2 cut(s)	374, 706
CviQI	GTAC	3 cut(s)	91, 202, 229
DdeI	CTNAG	4 cut(s)	11, 35, 141, 754
DpnI	GATC	2 cut(s)	165, 247
DpnII	GATC	2 cut(s)	163, 245
Eam1104I	CTCTTC	2 cut(s)	69, 801
EarI	CTCTTC	2 cut(s)	69, 801
Eco130I	CCWWGG	3 cut(s)	167, 674, 711
Eco147I	AGGCCT	1 cut(s)	644
Eco24I	GRGCYC	1 cut(s)	554
Eco47I	GGWCC	2 cut(s)	384, 720
Eco57I	CTGAAG	3 cut(s)	71, 193, 444
Eco81I	CCTNAGG	2 cut(s)	141, 754
Eco91I	GGTNACC	1 cut(s)	317
EcoO65I	GGTNACC	1 cut(s)	317
EcoRII	CCWGG	3 cut(s)	46, 178, 311
EcoT14I	CCWWGG	3 cut(s)	167, 674, 711
EcoT38I	GRGCYC	1 cut(s)	554
ErhI	CCWWGG	3 cut(s)	167, 674, 711
FaeI	CATG	2 cut(s)	377, 709
FaiI	YATR	5 cut(s)	375, 398, 473, 587, 707
FatI	CATG	2 cut(s)	373, 705
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	3 cut(s)	583, 663, 820
FokI	GGATG	4 cut(s)	48, 122, 346, 736
FriOI	GRGCYC	1 cut(s)	554
Fsp4HI	GCNGC	3 cut(s)	583, 663, 820
FspBI	CTAG	2 cut(s)	216, 629
GlaI	GCGC	2 cut(s)	101, 738
GluI	GCNGC	3 cut(s)	583, 663, 820
HaeIII	GGCC	3 cut(s)	224, 644, 688
HapII	CCGG	1 cut(s)	560
HhaI	GCGC	2 cut(s)	102, 739
Hin1II	CATG	2 cut(s)	377, 709
Hin6I	GCGC	2 cut(s)	100, 737
HinP1I	GCGC	2 cut(s)	100, 737
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HinfI	GANTC	1 cut(s)	768
HpaII	CCGG	1 cut(s)	560
HphI	GGTGA	2 cut(s)	194, 574
Hpy166II	GTNNAC	3 cut(s)	109, 565, 655
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	1 cut(s)	706
Hpy8I	GTNNAC	3 cut(s)	109, 565, 655
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	2 cut(s)	507, 852
HpyCH4V	TGCA	6 cut(s)	156, 400, 547, 640, 648, 822
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 819
HpyF3I	CTNAG	4 cut(s)	11, 35, 141, 754
Hsp92II	CATG	2 cut(s)	377, 709
HspAI	GCGC	2 cut(s)	100, 737
Kzo9I	GATC	2 cut(s)	163, 245
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	799
Lsp1109I	GCAGC	1 cut(s)	806
MaeI	CTAG	2 cut(s)	216, 629
MaeIII	GTNAC	2 cut(s)	317, 769
MalI	GATC	2 cut(s)	165, 247
MbiI	CCGCTC	1 cut(s)	662
MboI	GATC	2 cut(s)	163, 245
MfeI	CAATTG	1 cut(s)	568
MhlI	GDGCHC	2 cut(s)	554, 804
MluCI	AATT	5 cut(s)	300, 461, 478, 568, 724
MlyI	GAGTC	1 cut(s)	777
MroXI	GAANNNNTTC	1 cut(s)	630
MseI	TTAA	1 cut(s)	512
MslI	CAYNNNNRTG	1 cut(s)	449
MspI	CCGG	1 cut(s)	560
MspR9I	CCNGG	3 cut(s)	48, 180, 313
MunI	CAATTG	1 cut(s)	568
MvaI	CCWGG	3 cut(s)	48, 180, 313
MwoI	GCNNNNNNNGC	2 cut(s)	40, 819
NdeII	GATC	2 cut(s)	163, 245
NlaIII	CATG	2 cut(s)	377, 709
NlaIV	GGNNCC	1 cut(s)	59
NmeAIII	GCCGAG	1 cut(s)	664
NmuCI	GTSAC	1 cut(s)	769
OliI	CACNNNNGTG	1 cut(s)	449
PagI	TCATGA	1 cut(s)	705
PceI	AGGCCT	1 cut(s)	644
PciSI	GCTCTTC	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	1 cut(s)	786
PdmI	GAANNNNTTC	1 cut(s)	630
PkrI	GCNGC	3 cut(s)	584, 664, 821
PleI	GAGTC	1 cut(s)	776
PpsI	GAGTC	1 cut(s)	776
Psp6I	CCWGG	3 cut(s)	46, 178, 311
PspEI	GGTNACC	1 cut(s)	317
PspGI	CCWGG	3 cut(s)	46, 178, 311
PspN4I	GGNNCC	1 cut(s)	59
PspPI	GGNCC	2 cut(s)	384, 720
PstNI	CAGNNNCTG	2 cut(s)	266, 819
RsaI	GTAC	3 cut(s)	92, 203, 230
RsaNI	GTAC	3 cut(s)	91, 202, 229
RseI	CAYNNNNRTG	1 cut(s)	449
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	512
SatI	GCNGC	3 cut(s)	583, 663, 820
Sau3AI	GATC	2 cut(s)	163, 245
Sau96I	GGNCC	2 cut(s)	384, 720
ScaI	AGTACT	1 cut(s)	92
SchI	GAGTC	1 cut(s)	777
ScrFI	CCNGG	3 cut(s)	48, 180, 313
SduI	GDGCHC	2 cut(s)	554, 804
SinI	GGWCC	2 cut(s)	384, 720
SmiMI	CAYNNNNRTG	1 cut(s)	449
SpeI	ACTAGT	1 cut(s)	628
Sse9I	AATT	5 cut(s)	300, 461, 478, 568, 724
SseBI	AGGCCT	1 cut(s)	644
SsiI	CCGC	2 cut(s)	583, 662
SspMI	CTAG	2 cut(s)	216, 629
StuI	AGGCCT	1 cut(s)	644
StyD4I	CCNGG	3 cut(s)	46, 178, 311
StyI	CCWWGG	3 cut(s)	167, 674, 711
TaaI	ACNGT	2 cut(s)	507, 852
TaqI	TCGA	1 cut(s)	482
TaqII	GACCGA	2 cut(s)	401, 672
TasI	AATT	5 cut(s)	300, 461, 478, 568, 724
TatI	WGTACW	1 cut(s)	90
TauI	GCSGC	2 cut(s)	585, 665
Tru1I	TTAA	1 cut(s)	512
Tru9I	TTAA	1 cut(s)	512
TscAI	CASTG	2 cut(s)	510, 613
TseFI	GTSAC	1 cut(s)	769
TseI	GCWGC	1 cut(s)	819
Tsp45I	GTSAC	1 cut(s)	769
TspDTI	ATGAA	4 cut(s)	350, 524, 694, 738
TspRI	CASTG	2 cut(s)	510, 613
VpaK11BI	GGWCC	2 cut(s)	384, 720
XapI	RAATTY	2 cut(s)	461, 478
XmiI	GTMKAC	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	630
XspI	CTAG	2 cut(s)	216, 629
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.