Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013526

Physical Location & Seq

Genomic Coordinates Reverse (-)

4252842 .. 4255378

Gene Structure 2537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G13290.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGAAGCAAAGAAGAAGAAGAAATGGATGTAGTAGTAGCAACACTATCTCTCTACTCTTATTATTCTTCTTAGTCTTCTTTTCAAGAACAAGCACAAGTACAAGTTGTCGTAGAAGAACTGTTAAACACTTATCCACAACTTCAACATCATCTACACCACTTGAATCAAGAATCACTTCCAAGGTTATTGTGATTAGTATCGTCTCAGGGATTTTAACAGGGTTGGTTTCAGCTTTGGTGTTAGCTTTCTTGGTTCGTAGCATTGTCAAATTCATGAAACAGACGCCAATTCTCAAAGGTCCAGTGGTGTTTTCTCCTAAGATTACTCCTAAATCTCTCCACGCAGCTCTCAGTAATGTCAAGAGACTAGGCTCACTTGAAGGAGTTGGTTCACCAGAAAGTAGTAGTAGCAAGTCGGTTAAGAGAAGGTTGCAGAAGGAACTTGAGCTTCTTGCTGGGTTAAGGCATAGGAACCTTATGAGTTTACGAGCTTATGTTCGCGAATCTGATGAGTTCTCTCTGGTCTATGATTACATGCCTAATGGTAGCCTTGAGGATGTGATGAATAAAGTTAGAACGAAAGAGGTAGAGCTTGGATGGGAGATTAGGCTTAGAGTTGCAGTTGGAATTGTGAAAGGGCTTCAGTATCTTCATTTCAGTTGTGAGACCCAGATTCTTCATTATAACCTGAAACCTACAAATGTGATGTTGGATTCTGAGTTTGAGCCTCGGCTTGCTGATTGTGGATTGGCCAAGATCATGCCTAGTTCACACACAGCGGTATCTTGCTACTCTGCCCCTGAGTCCTCTCAAAGTAACAGATACACAGACAAAAGCGACATATTCAGCTTTGGGATGATATTGGGTGTTCTTTTAACCGGAAGAGACCCGACCCACCCGTTCTGCGAAGAGTCTGCAAGCGGAGGTAGCTTAGGACAGTGGCTGAAACATTTACAACAGTCTGGGGAAGCACGAGAAGCATTAGATAAGACTATTCTTGGAGAGGAAGTGGAGGAAGACGAAATGTTAATGGCTTTAAGAATCACCATCATCTGCCTTTCTGACTTTCCGGCAGACCGGCCTTCAAGTGATGAGCTTGTCCACATGCTTACACAACTGCACAGCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009888 GO:0009909 GO:0010073 GO:0010075 GO:0016020 GO:0032501 GO:0032502 GO:0033612 GO:0040008 GO:0044464 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0071944 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

376

Amino Acids

41.86

Weight (kDa)

9.11

Isoelectric Point (pI)

57.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	122 - 392	6.4e-31	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	139 - 331	6.7e-24	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13290 AT5G13290 AT5G13290
fragaria_vesca	FvH4_4g22780
malus_domestica	MD13G1129700.v1.1 MD16G1130000.v1.1
prunus_persica	Prupe.1G216600_v2.0.a1 Prupe.1G216600_v2.0.a1
pyrus_communis	pycom16g11060
rosa_chinensis	RchiOBHm_Chr4g0429001
rosa_laevigata	RLG00000007105
rosa_multiflora	Rmu_sc0008629.1_g000015 Rmu_sc0008629.1_g000016
rosa_roxburghii	Rroxscaffold_5G00370660
rosa_rugosa	Rorug04G0231900
rosa_samantha	Rh4BG294100 Rh4CG309600 Rh4DG291000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	684
AccII	CGCG	1 cut(s)	501
AciI	CCGC	2 cut(s)	779, 921
AcoI	YGGCCR	1 cut(s)	750
AcsI	RAATTY	1 cut(s)	269
AcuI	CTGAAG	1 cut(s)	626
AcyI	GRCGYC	1 cut(s)	284
AfaI	GTAC	1 cut(s)	100
AgsI	TTSAA	5 cut(s)	84, 144, 164, 380, 1086
Alw26I	GTCTC	4 cut(s)	208, 358, 659, 879
AlwNI	CAGNNNCTG	1 cut(s)	943
AoxI	GGCC	2 cut(s)	750, 1079
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	269
Asp700I	GAANNNNTTC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	2 cut(s)	384, 1036
AvaII	GGWCC	1 cut(s)	299
BaeI	ACNNNNGTAYC	2 cut(s)	765, 798
BalI	TGGCCA	1 cut(s)	752
BauI	CACGAG	1 cut(s)	972
BbsI	GAAGAC	2 cut(s)	67, 1023
BbvI	GCAGC	1 cut(s)	356
BccI	CCATC	2 cut(s)	591, 1055
BcgI	CGANNNNNNTGC	2 cut(s)	896, 930
BcoDI	GTCTC	4 cut(s)	208, 358, 659, 879
BfaI	CTAG	2 cut(s)	368, 765
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	473
BpiI	GAAGAC	2 cut(s)	67, 1023
Bpu10I	CCTNAGC	1 cut(s)	931
BpuEI	CTTGAG	2 cut(s)	464, 572
BsaBI	GATNNNNATC	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	284
BsaI	GGTCTC	2 cut(s)	659, 879
BsaJI	CCNNGG	2 cut(s)	180, 728
BsaWI	WCCGGW	1 cut(s)	878
BsaXI	ACNNNNNCTCC	2 cut(s)	993, 1023
Bse118I	RCCGGY	1 cut(s)	1077
Bse1I	ACTGG	1 cut(s)	302
Bse8I	GATNNNNATC	1 cut(s)	197
BseDI	CCNNGG	2 cut(s)	180, 728
BseGI	GGATG	4 cut(s)	32, 562, 602, 861
BseJI	GATNNNNATC	1 cut(s)	197
BseMII	CTCAG	4 cut(s)	219, 364, 708, 792
BseNI	ACTGG	1 cut(s)	302
BseXI	GCAGC	1 cut(s)	356
BseYI	CCCAGC	1 cut(s)	455
BsgI	GTGCAG	1 cut(s)	1103
Bsh1236I	CGCG	1 cut(s)	501
BshFI	GGCC	2 cut(s)	752, 1081
BsiSI	CCGG	3 cut(s)	879, 1070, 1078
BsmAI	GTCTC	4 cut(s)	208, 358, 659, 879
BsmBI	CGTCTC	1 cut(s)	208
BsnI	GGCC	2 cut(s)	752, 1081
Bso31I	GGTCTC	2 cut(s)	659, 879
Bsp143I	GATC	1 cut(s)	756
Bsp68I	TCGCGA	1 cut(s)	501
BspACI	CCGC	2 cut(s)	779, 921
BspANI	GGCC	2 cut(s)	752, 1081
BspCNI	CTCAG	4 cut(s)	218, 363, 709, 793
BspFNI	CGCG	1 cut(s)	501
BspHI	TCATGA	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	473
BspTNI	GGTCTC	2 cut(s)	659, 879
BsrFI	RCCGGY	1 cut(s)	1077
BsrI	ACTGG	1 cut(s)	302
BssAI	RCCGGY	1 cut(s)	1077
BssECI	CCNNGG	2 cut(s)	180, 728
BssMI	GATC	1 cut(s)	756
BssNI	GRCGYC	1 cut(s)	284
BssSI	CACGAG	1 cut(s)	972
BssT1I	CCWWGG	1 cut(s)	180
Bst2BI	CACGAG	1 cut(s)	972
Bst4CI	ACNGT	3 cut(s)	121, 939, 960
Bst6I	CTCTTC	2 cut(s)	877, 903
BstACI	GRCGYC	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	735, 919
BstDEI	CTNAG	8 cut(s)	70, 205, 318, 350, 611, 717, 801, 931
BstF5I	GGATG	4 cut(s)	32, 562, 602, 861
BstFNI	CGCG	1 cut(s)	501
BstKTI	GATC	1 cut(s)	759
BstMAI	GTCTC	4 cut(s)	208, 358, 659, 879
BstMBI	GATC	1 cut(s)	756
BstMWI	GCNNNNNNNGC	2 cut(s)	927, 977
BstNSI	RCATGY	2 cut(s)	538, 1108
BstUI	CGCG	1 cut(s)	501
BstV1I	GCAGC	1 cut(s)	356
BstV2I	GAAGAC	2 cut(s)	67, 1023
BsuRI	GGCC	2 cut(s)	752, 1081
BtsCI	GGATG	4 cut(s)	32, 562, 602, 861
BtsIMutI	CAGTG	2 cut(s)	309, 944
BtuMI	TCGCGA	1 cut(s)	501
Cac8I	GCNNGC	2 cut(s)	735, 919
CaiI	CAGNNNCTG	1 cut(s)	943
CciI	TCATGA	1 cut(s)	273
Cfr10I	RCCGGY	1 cut(s)	1077
Cfr13I	GGNCC	1 cut(s)	299
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	4 cut(s)	274, 535, 760, 1105
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	8 cut(s)	70, 205, 318, 350, 611, 717, 801, 931
DpnI	GATC	1 cut(s)	758
DpnII	GATC	1 cut(s)	756
EaeI	YGGCCR	1 cut(s)	750
Eam1104I	CTCTTC	2 cut(s)	877, 903
EarI	CTCTTC	2 cut(s)	877, 903
Eco130I	CCWWGG	1 cut(s)	180
Eco31I	GGTCTC	2 cut(s)	659, 879
Eco47I	GGWCC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	626
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	4 cut(s)	277, 538, 763, 1108
FalI	AAGNNNNNCTT	2 cut(s)	160, 192
FatI	CATG	4 cut(s)	273, 534, 759, 1104
Fnu4HI	GCNGC	1 cut(s)	345
FokI	GGATG	4 cut(s)	39, 569, 609, 868
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	2 cut(s)	368, 765
GluI	GCNGC	1 cut(s)	345
GsaI	CCCAGC	1 cut(s)	459
HaeIII	GGCC	2 cut(s)	752, 1081
HapII	CCGG	3 cut(s)	879, 1070, 1078
HgaI	GACGC	1 cut(s)	292
Hin1I	GRCGYC	1 cut(s)	284
Hin1II	CATG	4 cut(s)	277, 538, 763, 1108
HinfI	GANTC	8 cut(s)	164, 171, 503, 673, 713, 803, 911, 1041
HpaII	CCGG	3 cut(s)	879, 1070, 1078
HphI	GGTGA	2 cut(s)	384, 1036
Hpy166II	GTNNAC	4 cut(s)	392, 485, 770, 1102
Hpy188I	TCNGA	3 cut(s)	508, 718, 1063
Hpy188III	TCNNGA	5 cut(s)	84, 168, 274, 361, 500
Hpy8I	GTNNAC	4 cut(s)	392, 485, 770, 1102
HpyAV	CCTTC	4 cut(s)	374, 420, 430, 1092
HpyCH4III	ACNGT	3 cut(s)	121, 939, 960
HpyCH4V	TGCA	4 cut(s)	433, 620, 917, 1120
HpyF10VI	GCNNNNNNNGC	2 cut(s)	927, 977
HpyF3I	CTNAG	8 cut(s)	70, 205, 318, 350, 611, 717, 801, 931
Hsp92I	GRCGYC	1 cut(s)	284
Hsp92II	CATG	4 cut(s)	277, 538, 763, 1108
Kzo9I	GATC	1 cut(s)	756
Lsp1109I	GCAGC	1 cut(s)	356
MaeI	CTAG	2 cut(s)	368, 765
MaeIII	GTNAC	1 cut(s)	815
MalI	GATC	1 cut(s)	758
MboI	GATC	1 cut(s)	756
MlsI	TGGCCA	1 cut(s)	752
MluCI	AATT	3 cut(s)	269, 288, 627
MluNI	TGGCCA	1 cut(s)	752
MlyI	GAGTC	2 cut(s)	812, 920
MmeI	TCCRAC	2 cut(s)	604, 690
MnlI	CCTC	7 cut(s)	547, 577, 738, 817, 917, 997, 1006
Mox20I	TGGCCA	1 cut(s)	752
MroXI	GAANNNNTTC	1 cut(s)	175
MscI	TGGCCA	1 cut(s)	752
MseI	TTAA	7 cut(s)	123, 215, 420, 461, 875, 1028, 1037
Msp20I	TGGCCA	1 cut(s)	752
MspA1I	CMGCKG	1 cut(s)	779
MspI	CCGG	3 cut(s)	879, 1070, 1078
MvnI	CGCG	1 cut(s)	501
MwoI	GCNNNNNNNGC	2 cut(s)	927, 977
NdeII	GATC	1 cut(s)	756
NlaIII	CATG	4 cut(s)	277, 538, 763, 1108
NlaIV	GGNNCC	1 cut(s)	473
NmeAIII	GCCGAG	1 cut(s)	709
NruI	TCGCGA	1 cut(s)	501
NspI	RCATGY	2 cut(s)	538, 1108
PagI	TCATGA	1 cut(s)	273
PdmI	GAANNNNTTC	1 cut(s)	175
PfeI	GAWTC	6 cut(s)	164, 171, 503, 673, 713, 1041
PkrI	GCNGC	1 cut(s)	346
PleI	GAGTC	2 cut(s)	811, 919
PpsI	GAGTC	2 cut(s)	811, 919
PsiI	TTATAA	1 cut(s)	684
PspFI	CCCAGC	1 cut(s)	455
PspN4I	GGNNCC	1 cut(s)	473
PspPI	GGNCC	1 cut(s)	299
PstNI	CAGNNNCTG	1 cut(s)	943
RruI	TCGCGA	1 cut(s)	501
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
SaqAI	TTAA	7 cut(s)	123, 215, 420, 461, 875, 1028, 1037
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	1 cut(s)	756
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	2 cut(s)	812, 920
SinI	GGWCC	1 cut(s)	299
SmlI	CTYRAG	2 cut(s)	443, 551
SmoI	CTYRAG	2 cut(s)	443, 551
Sse9I	AATT	3 cut(s)	269, 288, 627
SsiI	CCGC	2 cut(s)	779, 921
SspMI	CTAG	2 cut(s)	368, 765
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	3 cut(s)	121, 939, 960
TasI	AATT	3 cut(s)	269, 288, 627
TatI	WGTACW	1 cut(s)	98
TfiI	GAWTC	6 cut(s)	164, 171, 503, 673, 713, 1041
Tru1I	TTAA	7 cut(s)	123, 215, 420, 461, 875, 1028, 1037
Tru9I	TTAA	7 cut(s)	123, 215, 420, 461, 875, 1028, 1037
TscAI	CASTG	2 cut(s)	309, 944
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	6 cut(s)	17, 262, 290, 578, 641, 668
TspRI	CASTG	2 cut(s)	309, 944
VpaK11BI	GGWCC	1 cut(s)	299
XapI	RAATTY	1 cut(s)	269
XceI	RCATGY	2 cut(s)	538, 1108
XmnI	GAANNNNTTC	1 cut(s)	175
XspI	CTAG	2 cut(s)	368, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.