Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0013526

Physical Location & Seq

Genomic Coordinates Reverse (-)

13594664 .. 13596573

Gene Structure 1910 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007105

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGGTAGAGGAAGAAGTACTTCAAATTTGAAGTGTAGAATCACTAGGCTGCTTCTGCTTCTGCTTTGGCTATTCCTGTTCTGCTTAACTGTTCAGTGCCAAGAAACTGAGCCTCCATCGCCGTCAAAGCACCCTCACTCCAAGAACAACGAGCTTGAAAGAATCATTCTTAGTCTTGTGTTGGGAGTATTGACCGGACTCATACTTGCTCTTATCTCTGCTTTCATTGTCCACTGCTTTGTTCGCTACATTAGCAGAACCCCAATTCTCAAGGGCCCTGTAATTTTCTCCCCGAAAATCGCTCCGAAAACGCTCCAGTTGGCTCTGGCGAATGAGAATCAGTTGCTCGGTTCGAGCCCAAATGGCAAGTACTACAGGACTGTGCTTGACAATGGGCTCATTATTGCAGTGAAGCAGCTGGAGCCCTTTTCGGAGTGTGGCTCACCTGAGGCTCAGAGCAAGTCTGCTAAGAGAAGGATACAGCAGGAGCTGGAAGTGCTTGCTGGCCTGAGACATAGGCATTTGATGAGTTTGAGGGCTTATGTTCGCGAGCACGATAGGTTCTCTTTGGTTTATGATTTTGTGCCCAATGGGAGCCTGGAGGATGCTATGAATAGAGTTAGGGAGAATCAGTTGCAGCTCAGTTGGGAGGTTCGCCTTCGGATTGCAGTTGGGGTGATTAAGGGGCTTCAGTATCTTCATGCATATGTGCCTCAGATTATGCATAACAACTTGAAGCCGAGAAATGTTATGTTGGATGCTGAGTTTGAACCGAGGTTGGGAGATTATGGGTTGGCTAAGCTCACTCCCCATTTGGATGGGGCATTATCTGGTTACACTGCTCCAGAGTGTTTCCAGAATGACAGGTACACTGATAAGAGCGACATTTTCAGCTTTGGGATGATATTGGGAGTTTTACTGACTGGAAGAGACCCAACTGATCCCTTCTTTGGGGAAACATCTAGCGGAGGAAGTTTAGGACGGTGGCTGCGGCACTTGCAGCATGCAGGGGAGGCACGGGAAGCGTTAGATAAGAGCCTTATTGGGGAAGAAGGAGAGGAAGATGAAATGTTAATGGCGGTGAGAATTGCTGTCGTATGCTTATCAGATGTGCCAGCAGAAAGACCCTCAAGTGATGAACTTGTTCACATGCTAACCCAACTGCACAGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005798 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0007275 GO:0007389 GO:0008047 GO:0008150 GO:0008289 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009965 GO:0010016 GO:0010033 GO:0010051 GO:0010087 GO:0012505 GO:0016020 GO:0016192 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030234 GO:0030695 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0035091 GO:0042221 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050790 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0097708 GO:0098657 GO:0098772 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 Ank_5 ArfGap BAR_3 PH Pkinase

Protein Analysis

392

Amino Acids

43.91

Weight (kDa)

7.21

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	112 - 382	2e-30	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	116 - 313	9.9e-25	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13290 AT5G13290 AT5G13290
fragaria_vesca	FvH4_4g22780
malus_domestica	MD13G1129700.v1.1 MD16G1130000.v1.1
prunus_persica	Prupe.1G216600_v2.0.a1 Prupe.1G216600_v2.0.a1
pyrus_communis	pycom16g11060
rosa_chinensis	RchiOBHm_Chr4g0429001
rosa_laevigata	RLG00000007105
rosa_multiflora	Rmu_sc0008629.1_g000015 Rmu_sc0008629.1_g000016
rosa_roxburghii	Rroxscaffold_5G00370660
rosa_rugosa	Rorug04G0231900
rosa_samantha	Rh4BG294100 Rh4CG309600 Rh4DG291000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	549
AciI	CCGC	3 cut(s)	966, 991, 1079
AclWI	GGATC	1 cut(s)	935
AcsI	RAATTY	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	674
AfaI	GTAC	3 cut(s)	19, 371, 869
AfiI	CCNNNNNNNGG	4 cut(s)	779, 950, 951, 1045
AgsI	TTSAA	5 cut(s)	24, 31, 158, 736, 770
AjnI	CCWGG	1 cut(s)	597
AluBI	AGCT	6 cut(s)	154, 418, 490, 640, 802, 894
AluI	AGCT	6 cut(s)	154, 418, 490, 640, 802, 894
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	2 cut(s)	505, 924
AlwI	GGATC	1 cut(s)	935
AlwNI	CAGNNNCTG	1 cut(s)	490
AoxI	GGCC	2 cut(s)	274, 505
ApaI	GGGCCC	1 cut(s)	278
ApeKI	GCWGC	5 cut(s)	49, 415, 637, 988, 1000
ApoI	RAATTY	1 cut(s)	25
Asp700I	GAANNNNTTC	2 cut(s)	19, 1143
AspS9I	GGNCC	2 cut(s)	274, 275
AsuHPI	GGTGA	3 cut(s)	435, 688, 1093
AxyI	CCTNAGG	1 cut(s)	447
BaeGI	GKGCMC	2 cut(s)	278, 588
BanII	GRGCYC	4 cut(s)	278, 359, 399, 426
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	5 cut(s)	36, 427, 649, 975, 1012
BccI	CCATC	2 cut(s)	124, 812
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	1 cut(s)	599
BciVI	GTATCC	1 cut(s)	471
BcoDI	GTCTC	2 cut(s)	505, 924
BfaI	CTAG	2 cut(s)	45, 963
BfmI	CTRYAG	1 cut(s)	373
BfuI	GTATCC	1 cut(s)	471
BglI	GCCNNNNNGGC	1 cut(s)	363
BisI	GCNGC	6 cut(s)	50, 416, 638, 989, 992, 1001
BlpI	GCTNAGC	1 cut(s)	798
BlsI	GCNGC	6 cut(s)	51, 417, 639, 990, 993, 1002
BmcAI	AGTACT	2 cut(s)	19, 371
Bme1390I	CCNGG	1 cut(s)	599
BmgT120I	GGNCC	2 cut(s)	274, 275
BmiI	GGNNCC	3 cut(s)	276, 423, 596
BmrFI	CCNGG	1 cut(s)	599
BmsI	GCATC	2 cut(s)	595, 748
BplI	GAGNNNNNCTC	2 cut(s)	425, 457
BpmI	CTGGAG	4 cut(s)	299, 440, 620, 828
Bpu1102I	GCTNAGC	1 cut(s)	798
BpuEI	CTTGAG	2 cut(s)	254, 1114
BsaI	GGTCTC	1 cut(s)	924
BsaJI	CCNNGG	1 cut(s)	773
BsaWI	WCCGGW	1 cut(s)	194
BsaXI	ACNNNNNCTCC	6 cut(s)	97, 122, 127, 152, 617, 647
Bsc4I	CCNNNNNNNGG	4 cut(s)	779, 950, 951, 1045
Bse1I	ACTGG	2 cut(s)	316, 928
Bse21I	CCTNAGG	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	1 cut(s)	773
BseGI	GGATG	4 cut(s)	610, 763, 823, 906
BseLI	CCNNNNNNNGG	4 cut(s)	779, 950, 951, 1045
BseMII	CTCAG	7 cut(s)	99, 438, 467, 500, 655, 728, 753
BseNI	ACTGG	2 cut(s)	316, 928
BseSI	GKGCMC	2 cut(s)	278, 588
BseXI	GCAGC	5 cut(s)	36, 427, 649, 975, 1012
BsgI	GTGCAG	1 cut(s)	1148
Bsh1236I	CGCG	1 cut(s)	549
BshFI	GGCC	2 cut(s)	276, 507
BsiHKAI	GWGCWC	1 cut(s)	555
BsiSI	CCGG	1 cut(s)	195
BslI	CCNNNNNNNGG	4 cut(s)	779, 950, 951, 1045
BsmAI	GTCTC	2 cut(s)	505, 924
BsnI	GGCC	2 cut(s)	276, 507
Bso31I	GGTCTC	1 cut(s)	924
Bsp120I	GGGCCC	1 cut(s)	274
Bsp1286I	GDGCHC	6 cut(s)	278, 359, 399, 426, 555, 588
Bsp143I	GATC	1 cut(s)	940
Bsp1720I	GCTNAGC	1 cut(s)	798
Bsp68I	TCGCGA	1 cut(s)	549
BspACI	CCGC	3 cut(s)	966, 991, 1079
BspANI	GGCC	2 cut(s)	276, 507
BspCNI	CTCAG	7 cut(s)	100, 439, 466, 501, 654, 727, 754
BspFNI	CGCG	1 cut(s)	549
BspLI	GGNNCC	3 cut(s)	276, 423, 596
BspPI	GGATC	1 cut(s)	935
BspTNI	GGTCTC	1 cut(s)	924
BsrI	ACTGG	2 cut(s)	316, 928
BssECI	CCNNGG	1 cut(s)	773
BssMI	GATC	1 cut(s)	940
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	4 cut(s)	91, 382, 984, 1169
Bst6I	CTCTTC	1 cut(s)	922
BstC8I	GCNNGC	5 cut(s)	501, 505, 551, 1005, 1116
BstF5I	GGATG	4 cut(s)	610, 763, 823, 906
BstFNI	CGCG	1 cut(s)	549
BstKTI	GATC	1 cut(s)	943
BstMAI	GTCTC	2 cut(s)	505, 924
BstMBI	GATC	1 cut(s)	940
BstNI	CCWGG	1 cut(s)	599
BstNSI	RCATGY	2 cut(s)	1007, 1153
BstSCI	CCNGG	1 cut(s)	597
BstSFI	CTRYAG	1 cut(s)	373
BstSLI	GKGCMC	2 cut(s)	278, 588
BstUI	CGCG	1 cut(s)	549
BstV1I	GCAGC	5 cut(s)	36, 427, 649, 975, 1012
BstXI	CCANNNNNNTGG	1 cut(s)	818
Bsu36I	CCTNAGG	1 cut(s)	447
BsuI	GTATCC	1 cut(s)	471
BsuRI	GGCC	2 cut(s)	276, 507
BtgZI	GCGATG	1 cut(s)	102
BtsCI	GGATG	4 cut(s)	610, 763, 823, 906
BtsI	GCAGTG	3 cut(s)	232, 414, 837
BtsIMutI	CAGTG	5 cut(s)	101, 232, 414, 837, 870
BtuMI	TCGCGA	1 cut(s)	549
Cac8I	GCNNGC	5 cut(s)	501, 505, 551, 1005, 1116
CaiI	CAGNNNCTG	1 cut(s)	490
Cfr13I	GGNCC	2 cut(s)	274, 275
Csp6I	GTAC	3 cut(s)	18, 370, 868
CviAII	CATG	3 cut(s)	701, 1004, 1150
CviQI	GTAC	3 cut(s)	18, 370, 868
DpnI	GATC	1 cut(s)	942
DpnII	GATC	1 cut(s)	940
Eam1104I	CTCTTC	1 cut(s)	922
EarI	CTCTTC	1 cut(s)	922
Eco24I	GRGCYC	4 cut(s)	278, 359, 399, 426
Eco31I	GGTCTC	1 cut(s)	924
Eco57I	CTGAAG	1 cut(s)	674
Eco81I	CCTNAGG	1 cut(s)	447
EcoO109I	RGGNCCY	2 cut(s)	274, 275
EcoRII	CCWGG	1 cut(s)	597
EcoT22I	ATGCAT	2 cut(s)	706, 726
EcoT38I	GRGCYC	4 cut(s)	278, 359, 399, 426
FaeI	CATG	3 cut(s)	704, 1007, 1153
FalI	AAGNNNNNCTT	1 cut(s)	36
FatI	CATG	3 cut(s)	700, 1003, 1149
FauNDI	CATATG	1 cut(s)	706
Fnu4HI	GCNGC	6 cut(s)	50, 416, 638, 989, 992, 1001
FokI	GGATG	4 cut(s)	617, 770, 830, 913
FriOI	GRGCYC	4 cut(s)	278, 359, 399, 426
Fsp4HI	GCNGC	6 cut(s)	50, 416, 638, 989, 992, 1001
FspBI	CTAG	2 cut(s)	45, 963
GluI	GCNGC	6 cut(s)	50, 416, 638, 989, 992, 1001
GsuI	CTGGAG	4 cut(s)	299, 440, 620, 828
HaeIII	GGCC	2 cut(s)	276, 507
HapII	CCGG	1 cut(s)	195
Hin1II	CATG	3 cut(s)	704, 1007, 1153
HinfI	GANTC	5 cut(s)	39, 162, 198, 337, 628
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	3 cut(s)	435, 688, 1093
Hpy166II	GTNNAC	3 cut(s)	232, 870, 1147
Hpy188I	TCNGA	6 cut(s)	306, 433, 456, 663, 717, 1108
Hpy188III	TCNNGA	3 cut(s)	548, 845, 856
Hpy8I	GTNNAC	3 cut(s)	232, 870, 1147
HpyAV	CCTTC	4 cut(s)	468, 668, 955, 1046
HpyCH4III	ACNGT	4 cut(s)	91, 382, 984, 1169
HpyCH4V	TGCA	8 cut(s)	407, 637, 668, 704, 724, 1000, 1007, 1165
Hsp92II	CATG	3 cut(s)	704, 1007, 1153
Kzo9I	GATC	1 cut(s)	940
LmnI	GCTCC	6 cut(s)	307, 318, 421, 487, 594, 847
Lsp1109I	GCAGC	5 cut(s)	36, 427, 649, 975, 1012
LweI	GCATC	2 cut(s)	595, 748
MaeI	CTAG	2 cut(s)	45, 963
MaeIII	GTNAC	1 cut(s)	833
MalI	GATC	1 cut(s)	942
MboI	GATC	1 cut(s)	940
MboII	GAAGA	5 cut(s)	24, 689, 939, 1061, 1073
MhlI	GDGCHC	6 cut(s)	278, 359, 399, 426, 555, 588
MluCI	AATT	4 cut(s)	25, 264, 282, 1086
MlyI	GAGTC	1 cut(s)	192
MmeI	TCCRAC	1 cut(s)	735
Mph1103I	ATGCAT	2 cut(s)	706, 726
MroXI	GAANNNNTTC	2 cut(s)	19, 1143
MseI	TTAA	4 cut(s)	86, 681, 1073, 1174
MslI	CAYNNNNRTG	2 cut(s)	705, 816
MspA1I	CMGCKG	1 cut(s)	418
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	1 cut(s)	599
MvaI	CCWGG	1 cut(s)	599
MvnI	CGCG	1 cut(s)	549
NdeI	CATATG	1 cut(s)	706
NdeII	GATC	1 cut(s)	940
NlaIII	CATG	3 cut(s)	704, 1007, 1153
NlaIV	GGNNCC	3 cut(s)	276, 423, 596
NmeAIII	GCCGAG	1 cut(s)	765
NruI	TCGCGA	1 cut(s)	549
NsiI	ATGCAT	2 cut(s)	706, 726
NspI	RCATGY	2 cut(s)	1007, 1153
PaeI	GCATGC	1 cut(s)	1007
PdmI	GAANNNNTTC	2 cut(s)	19, 1143
PfeI	GAWTC	4 cut(s)	39, 162, 337, 628
PkrI	GCNGC	6 cut(s)	51, 417, 639, 990, 993, 1002
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	597
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	3 cut(s)	276, 423, 596
PspOMI	GGGCCC	1 cut(s)	274
PspPI	GGNCC	2 cut(s)	274, 275
PstNI	CAGNNNCTG	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	418
RruI	TCGCGA	1 cut(s)	549
RsaI	GTAC	3 cut(s)	19, 371, 869
RsaNI	GTAC	3 cut(s)	18, 370, 868
RseI	CAYNNNNRTG	2 cut(s)	705, 816
SaqAI	TTAA	4 cut(s)	86, 681, 1073, 1174
SatI	GCNGC	6 cut(s)	50, 416, 638, 989, 992, 1001
Sau3AI	GATC	1 cut(s)	940
Sau96I	GGNCC	2 cut(s)	274, 275
ScaI	AGTACT	2 cut(s)	19, 371
SchI	GAGTC	1 cut(s)	192
ScrFI	CCNGG	1 cut(s)	599
SduI	GDGCHC	6 cut(s)	278, 359, 399, 426, 555, 588
SfaNI	GCATC	2 cut(s)	595, 748
SfcI	CTRYAG	1 cut(s)	373
SmiMI	CAYNNNNRTG	2 cut(s)	705, 816
SmlI	CTYRAG	2 cut(s)	269, 1129
SmoI	CTYRAG	2 cut(s)	269, 1129
SphI	GCATGC	1 cut(s)	1007
Sse9I	AATT	4 cut(s)	25, 264, 282, 1086
SsiI	CCGC	3 cut(s)	966, 991, 1079
SspMI	CTAG	2 cut(s)	45, 963
StyD4I	CCNGG	1 cut(s)	597
TaaI	ACNGT	4 cut(s)	91, 382, 984, 1169
TaqI	TCGA	1 cut(s)	353
TasI	AATT	4 cut(s)	25, 264, 282, 1086
TatI	WGTACW	2 cut(s)	17, 369
TauI	GCSGC	1 cut(s)	994
TfiI	GAWTC	4 cut(s)	39, 162, 337, 628
Tru1I	TTAA	4 cut(s)	86, 681, 1073, 1174
Tru9I	TTAA	4 cut(s)	86, 681, 1073, 1174
TscAI	CASTG	5 cut(s)	101, 239, 414, 844, 877
TseI	GCWGC	5 cut(s)	49, 415, 637, 988, 1000
TspDTI	ATGAA	5 cut(s)	214, 626, 689, 1080, 1152
TspRI	CASTG	5 cut(s)	101, 239, 414, 844, 877
XapI	RAATTY	1 cut(s)	25
XceI	RCATGY	2 cut(s)	1007, 1153
XcmI	CCANNNNNNNNNTGG	1 cut(s)	595
XmnI	GAANNNNTTC	2 cut(s)	19, 1143
XspI	CTAG	2 cut(s)	45, 963
ZrmI	AGTACT	2 cut(s)	19, 371
Zsp2I	ATGCAT	2 cut(s)	706, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.