Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0013526

Physical Location & Seq

Genomic Coordinates Forward (+)

25479376 .. 25483022

Gene Structure 3647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g22780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGGTAGAGGAACAAGTACTTCTAATTTGAAGTGTAGAGTCACAAGCCTGCTTCTGCTTCTGCTTTTGCTAGTCTTGTTCTGCTCAACTGTTCAGTGCCAAGAAACTGAGCCTCCATCGCCGTCGAAGCACCCTCGCTCCAAGAACAACAACCTTGAAAGAATCCTACTTAGTCTTGTGCTGGGAGTATTGACTGGACTCATATTAGCCCTCATCTCAGCTTTCATAGTCCGCTGCTTTGTTCGCTACATTAGCAGAGCCCCAATTCTCAAGGGCCCTGTGATTTTCTCCCCCAAAATCGCTCCGAAAACGCTCCAATTGGCACTGGCCAATGAGAACCAGCTGCTTGGTTCCAGCCCCATTGGGAAGTACTACAGGACTGTGCTTGACAATGGCCTCATTATTGCGGTGAAGCAGCTGGAGCCCTTTTCGGAGTGTGGCTCCCCCAAGGCGCAGAGCAAGTCGGCCAAGAGAAGGATACAGCAGGAGCTGGAAGTGCTTGCTGGCCTCAGACATAGGCATTTGATGAGCTTGAGGGCTTATGTTCGCGAGCACGATAGGTTCTCTTTGGTTTATGATTTTGTGCCCAATGGGAGCCTGGAGGATGCTATGAATAGAGTTAGGGAGAATCAGCTGCAGCTCAGCTGGGAGGTTCGGCTTCGGATTGCAGTTGGGGTGATTAAGGGGCTTCAGTATCTTCATGCATATGTGCCTCAGATTATGCATCACAATTTGAAGCCGAGAAATGTTATGTTGGATGCTGAATTTGAACCGAGGTTGGGTGATTATGGGTTGGCTAAGCTCACTCCCCATTTGGATGGGGCATTATCTGGTTACACTGCTCCAGAGTGTTTCCAGAATGACAGGTACACTGATAAGAGTGACATTTTCAGTTTTGGGATGATATTGGGAGTTTTATTAACTGGTAGAGACCCAACTGATCCCTTCTTTGGGGAAACATCTAGTGGAGGAAGTTTAGGACGGTGGTTGCGGCACTTGCAGCATGCAGGGGAGGCAAAGGAAGCATTAGATAAGAGCCTTATTGGGGAAGAAGGAGAGGAAGACGAAATGCTAATGGCGGTGAGAATTGCTGTCGTATGCTTATCAGATGTGCCAGCAGAAAGACCCTCAAGTGATGAACTTGTTCACATGCTAACCCAACTGCACAGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005798 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0007275 GO:0007389 GO:0008047 GO:0008150 GO:0008289 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009965 GO:0010016 GO:0010033 GO:0010051 GO:0010087 GO:0012505 GO:0016020 GO:0016192 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030234 GO:0030695 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0035091 GO:0042221 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050790 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0097708 GO:0098657 GO:0098772 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 Ank_5 ArfGap BAR_3 PH Pkinase

Protein Analysis

392

Amino Acids

43.61

Weight (kDa)

8.4

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	112 - 383	1.2e-30	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	116 - 313	9.3e-25	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13290 AT5G13290 AT5G13290
fragaria_vesca	FvH4_4g22780
malus_domestica	MD13G1129700.v1.1 MD16G1130000.v1.1
prunus_persica	Prupe.1G216600_v2.0.a1 Prupe.1G216600_v2.0.a1
pyrus_communis	pycom16g11060
rosa_chinensis	RchiOBHm_Chr4g0429001
rosa_laevigata	RLG00000007105
rosa_multiflora	Rmu_sc0008629.1_g000015 Rmu_sc0008629.1_g000016
rosa_roxburghii	Rroxscaffold_5G00370660
rosa_rugosa	Rorug04G0231900
rosa_samantha	Rh4BG294100 Rh4CG309600 Rh4DG291000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	549
AciI	CCGC	4 cut(s)	232, 407, 991, 1079
AclWI	GGATC	1 cut(s)	935
AcoI	YGGCCR	2 cut(s)	327, 465
AcsI	RAATTY	1 cut(s)	764
AcuI	CTGAAG	1 cut(s)	674
AfaI	GTAC	3 cut(s)	19, 371, 869
AfiI	CCNNNNNNNGG	5 cut(s)	474, 779, 950, 951, 1045
AgsI	TTSAA	4 cut(s)	31, 158, 736, 770
AjnI	CCWGG	1 cut(s)	597
AluBI	AGCT	9 cut(s)	221, 343, 418, 490, 531, 634, 640, 645, 802
AluI	AGCT	9 cut(s)	221, 343, 418, 490, 531, 634, 640, 645, 802
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	1 cut(s)	924
AlwI	GGATC	1 cut(s)	935
AlwNI	CAGNNNCTG	1 cut(s)	490
AoxI	GGCC	5 cut(s)	274, 327, 394, 465, 505
ApaI	GGGCCC	1 cut(s)	278
ApeKI	GCWGC	6 cut(s)	234, 343, 415, 634, 637, 1000
ApoI	RAATTY	1 cut(s)	764
Asp700I	GAANNNNTTC	1 cut(s)	1143
AspLEI	GCGC	1 cut(s)	454
AspS9I	GGNCC	2 cut(s)	274, 275
AsuHPI	GGTGA	4 cut(s)	421, 688, 794, 1093
BaeGI	GKGCMC	2 cut(s)	278, 588
BalI	TGGCCA	1 cut(s)	329
BanII	GRGCYC	3 cut(s)	262, 278, 426
BbsI	GAAGAC	1 cut(s)	1068
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	6 cut(s)	221, 330, 427, 621, 649, 1012
BccI	CCATC	2 cut(s)	124, 812
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	1 cut(s)	599
BciVI	GTATCC	1 cut(s)	471
BcoDI	GTCTC	1 cut(s)	924
BfaI	CTAG	2 cut(s)	71, 963
BfmI	CTRYAG	2 cut(s)	373, 635
BfuI	GTATCC	1 cut(s)	471
BisI	GCNGC	7 cut(s)	235, 344, 416, 635, 638, 992, 1001
BlpI	GCTNAGC	2 cut(s)	641, 798
BlsI	GCNGC	7 cut(s)	236, 345, 417, 636, 639, 993, 1002
BmcAI	AGTACT	2 cut(s)	19, 371
Bme1390I	CCNGG	1 cut(s)	599
BmgT120I	GGNCC	2 cut(s)	274, 275
BmiI	GGNNCC	5 cut(s)	276, 352, 423, 442, 596
BmrFI	CCNGG	1 cut(s)	599
BmsI	GCATC	3 cut(s)	595, 733, 748
BpiI	GAAGAC	1 cut(s)	1068
BplI	GAGNNNNNCTC	2 cut(s)	425, 457
BpmI	CTGGAG	3 cut(s)	440, 620, 828
Bpu1102I	GCTNAGC	2 cut(s)	641, 798
BpuEI	CTTGAG	3 cut(s)	254, 553, 1114
BsaI	GGTCTC	1 cut(s)	924
BsaJI	CCNNGG	2 cut(s)	447, 773
BsaXI	ACNNNNNCTCC	4 cut(s)	97, 122, 127, 152
Bsc4I	CCNNNNNNNGG	5 cut(s)	474, 779, 950, 951, 1045
Bse1I	ACTGG	3 cut(s)	199, 330, 928
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	2 cut(s)	447, 773
BseGI	GGATG	4 cut(s)	610, 763, 823, 906
BseLI	CCNNNNNNNGG	5 cut(s)	474, 779, 950, 951, 1045
BseMII	CTCAG	5 cut(s)	99, 231, 523, 655, 728
BseNI	ACTGG	3 cut(s)	199, 330, 928
BseSI	GKGCMC	2 cut(s)	278, 588
BseXI	GCAGC	6 cut(s)	221, 330, 427, 621, 649, 1012
BseYI	CCCAGC	2 cut(s)	181, 645
BsgI	GTGCAG	1 cut(s)	1148
Bsh1236I	CGCG	1 cut(s)	549
BshFI	GGCC	5 cut(s)	276, 329, 396, 467, 507
BsiHKAI	GWGCWC	1 cut(s)	555
BslI	CCNNNNNNNGG	5 cut(s)	474, 779, 950, 951, 1045
BsmAI	GTCTC	1 cut(s)	924
BsnI	GGCC	5 cut(s)	276, 329, 396, 467, 507
Bso31I	GGTCTC	1 cut(s)	924
Bsp120I	GGGCCC	1 cut(s)	274
Bsp1286I	GDGCHC	5 cut(s)	262, 278, 426, 555, 588
Bsp143I	GATC	1 cut(s)	940
Bsp1720I	GCTNAGC	2 cut(s)	641, 798
Bsp68I	TCGCGA	1 cut(s)	549
BspACI	CCGC	4 cut(s)	232, 407, 991, 1079
BspANI	GGCC	5 cut(s)	276, 329, 396, 467, 507
BspCNI	CTCAG	5 cut(s)	100, 230, 522, 654, 727
BspFNI	CGCG	1 cut(s)	549
BspLI	GGNNCC	5 cut(s)	276, 352, 423, 442, 596
BspMAI	CTGCAG	1 cut(s)	639
BspPI	GGATC	1 cut(s)	935
BspTNI	GGTCTC	1 cut(s)	924
BsrI	ACTGG	3 cut(s)	199, 330, 928
BssECI	CCNNGG	2 cut(s)	447, 773
BssMI	GATC	1 cut(s)	940
BssT1I	CCWWGG	1 cut(s)	447
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	4 cut(s)	91, 382, 984, 1169
BstC8I	GCNNGC	6 cut(s)	50, 501, 505, 551, 1005, 1116
BstDEI	CTNAG	7 cut(s)	108, 170, 217, 509, 641, 714, 798
BstF5I	GGATG	4 cut(s)	610, 763, 823, 906
BstFNI	CGCG	1 cut(s)	549
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	1 cut(s)	943
BstMAI	GTCTC	1 cut(s)	924
BstMBI	GATC	1 cut(s)	940
BstNI	CCWGG	1 cut(s)	599
BstNSI	RCATGY	2 cut(s)	1007, 1153
BstSCI	CCNGG	1 cut(s)	597
BstSFI	CTRYAG	2 cut(s)	373, 635
BstSLI	GKGCMC	2 cut(s)	278, 588
BstUI	CGCG	1 cut(s)	549
BstV1I	GCAGC	6 cut(s)	221, 330, 427, 621, 649, 1012
BstV2I	GAAGAC	1 cut(s)	1068
BstXI	CCANNNNNNTGG	2 cut(s)	347, 818
BsuI	GTATCC	1 cut(s)	471
BsuRI	GGCC	5 cut(s)	276, 329, 396, 467, 507
BtgZI	GCGATG	1 cut(s)	102
BtsCI	GGATG	4 cut(s)	610, 763, 823, 906
BtsI	GCAGTG	1 cut(s)	837
BtsIMutI	CAGTG	4 cut(s)	101, 323, 837, 870
BtuMI	TCGCGA	1 cut(s)	549
Cac8I	GCNNGC	6 cut(s)	50, 501, 505, 551, 1005, 1116
CaiI	CAGNNNCTG	1 cut(s)	490
CfoI	GCGC	1 cut(s)	454
Cfr13I	GGNCC	2 cut(s)	274, 275
Csp6I	GTAC	3 cut(s)	18, 370, 868
CviAII	CATG	3 cut(s)	701, 1004, 1150
CviQI	GTAC	3 cut(s)	18, 370, 868
DdeI	CTNAG	7 cut(s)	108, 170, 217, 509, 641, 714, 798
DpnI	GATC	1 cut(s)	942
DpnII	GATC	1 cut(s)	940
EaeI	YGGCCR	2 cut(s)	327, 465
Eco130I	CCWWGG	1 cut(s)	447
Eco24I	GRGCYC	3 cut(s)	262, 278, 426
Eco31I	GGTCTC	1 cut(s)	924
Eco57I	CTGAAG	1 cut(s)	674
EcoO109I	RGGNCCY	2 cut(s)	274, 275
EcoRII	CCWGG	1 cut(s)	597
EcoT14I	CCWWGG	1 cut(s)	447
EcoT22I	ATGCAT	2 cut(s)	706, 726
EcoT38I	GRGCYC	3 cut(s)	262, 278, 426
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	3 cut(s)	704, 1007, 1153
FatI	CATG	3 cut(s)	700, 1003, 1149
FauNDI	CATATG	1 cut(s)	706
Fnu4HI	GCNGC	7 cut(s)	235, 344, 416, 635, 638, 992, 1001
FokI	GGATG	4 cut(s)	617, 770, 830, 913
FriOI	GRGCYC	3 cut(s)	262, 278, 426
Fsp4HI	GCNGC	7 cut(s)	235, 344, 416, 635, 638, 992, 1001
FspBI	CTAG	2 cut(s)	71, 963
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	7 cut(s)	235, 344, 416, 635, 638, 992, 1001
GsaI	CCCAGC	2 cut(s)	185, 649
GsuI	CTGGAG	3 cut(s)	440, 620, 828
HaeIII	GGCC	5 cut(s)	276, 329, 396, 467, 507
HhaI	GCGC	1 cut(s)	454
Hin1II	CATG	3 cut(s)	704, 1007, 1153
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HinfI	GANTC	4 cut(s)	39, 162, 198, 628
HphI	GGTGA	4 cut(s)	421, 688, 794, 1093
Hpy166II	GTNNAC	2 cut(s)	870, 1147
Hpy188I	TCNGA	6 cut(s)	306, 433, 512, 663, 717, 1108
Hpy188III	TCNNGA	3 cut(s)	548, 845, 856
Hpy8I	GTNNAC	2 cut(s)	870, 1147
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	3 cut(s)	468, 955, 1046
HpyCH4III	ACNGT	4 cut(s)	91, 382, 984, 1169
HpyCH4V	TGCA	7 cut(s)	637, 668, 704, 724, 1000, 1007, 1165
HpyF3I	CTNAG	7 cut(s)	108, 170, 217, 509, 641, 714, 798
Hsp92II	CATG	3 cut(s)	704, 1007, 1153
HspAI	GCGC	1 cut(s)	452
Kzo9I	GATC	1 cut(s)	940
LmnI	GCTCC	8 cut(s)	143, 307, 318, 421, 446, 487, 594, 847
Lsp1109I	GCAGC	6 cut(s)	221, 330, 427, 621, 649, 1012
LweI	GCATC	3 cut(s)	595, 733, 748
MaeI	CTAG	2 cut(s)	71, 963
MaeIII	GTNAC	3 cut(s)	40, 833, 881
MalI	GATC	1 cut(s)	942
MboI	GATC	1 cut(s)	940
MboII	GAAGA	3 cut(s)	689, 1061, 1073
MfeI	CAATTG	1 cut(s)	317
MhlI	GDGCHC	5 cut(s)	262, 278, 426, 555, 588
MlsI	TGGCCA	1 cut(s)	329
MluCI	AATT	6 cut(s)	25, 264, 317, 730, 764, 1086
MluNI	TGGCCA	1 cut(s)	329
MlyI	GAGTC	2 cut(s)	48, 192
MmeI	TCCRAC	1 cut(s)	735
Mox20I	TGGCCA	1 cut(s)	329
Mph1103I	ATGCAT	2 cut(s)	706, 726
MroXI	GAANNNNTTC	1 cut(s)	1143
MscI	TGGCCA	1 cut(s)	329
MseI	TTAA	3 cut(s)	681, 920, 1174
MslI	CAYNNNNRTG	2 cut(s)	705, 816
Msp20I	TGGCCA	1 cut(s)	329
MspA1I	CMGCKG	5 cut(s)	234, 343, 418, 634, 645
MspR9I	CCNGG	1 cut(s)	599
MunI	CAATTG	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	599
MvnI	CGCG	1 cut(s)	549
NdeI	CATATG	1 cut(s)	706
NdeII	GATC	1 cut(s)	940
NlaIII	CATG	3 cut(s)	704, 1007, 1153
NlaIV	GGNNCC	5 cut(s)	276, 352, 423, 442, 596
NmeAIII	GCCGAG	1 cut(s)	765
NmuCI	GTSAC	2 cut(s)	40, 881
NruI	TCGCGA	1 cut(s)	549
NsiI	ATGCAT	2 cut(s)	706, 726
NspI	RCATGY	2 cut(s)	1007, 1153
PaeI	GCATGC	1 cut(s)	1007
PdmI	GAANNNNTTC	1 cut(s)	1143
PfeI	GAWTC	2 cut(s)	162, 628
PkrI	GCNGC	7 cut(s)	236, 345, 417, 636, 639, 993, 1002
PleI	GAGTC	2 cut(s)	47, 192
PpsI	GAGTC	2 cut(s)	47, 192
Psp6I	CCWGG	1 cut(s)	597
PspFI	CCCAGC	2 cut(s)	181, 645
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	5 cut(s)	276, 352, 423, 442, 596
PspOMI	GGGCCC	1 cut(s)	274
PspPI	GGNCC	2 cut(s)	274, 275
PstI	CTGCAG	1 cut(s)	639
PstNI	CAGNNNCTG	1 cut(s)	490
PvuII	CAGCTG	4 cut(s)	343, 418, 634, 645
RruI	TCGCGA	1 cut(s)	549
RsaI	GTAC	3 cut(s)	19, 371, 869
RsaNI	GTAC	3 cut(s)	18, 370, 868
RseI	CAYNNNNRTG	2 cut(s)	705, 816
SaqAI	TTAA	3 cut(s)	681, 920, 1174
SatI	GCNGC	7 cut(s)	235, 344, 416, 635, 638, 992, 1001
Sau3AI	GATC	1 cut(s)	940
Sau96I	GGNCC	2 cut(s)	274, 275
ScaI	AGTACT	2 cut(s)	19, 371
SchI	GAGTC	2 cut(s)	48, 192
ScrFI	CCNGG	1 cut(s)	599
SduI	GDGCHC	5 cut(s)	262, 278, 426, 555, 588
SfaNI	GCATC	3 cut(s)	595, 733, 748
SfcI	CTRYAG	2 cut(s)	373, 635
SmiMI	CAYNNNNRTG	2 cut(s)	705, 816
SmlI	CTYRAG	3 cut(s)	269, 532, 1129
SmoI	CTYRAG	3 cut(s)	269, 532, 1129
SphI	GCATGC	1 cut(s)	1007
Sse9I	AATT	6 cut(s)	25, 264, 317, 730, 764, 1086
SsiI	CCGC	4 cut(s)	232, 407, 991, 1079
SspMI	CTAG	2 cut(s)	71, 963
StyD4I	CCNGG	1 cut(s)	597
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	4 cut(s)	91, 382, 984, 1169
TaqI	TCGA	1 cut(s)	125
TasI	AATT	6 cut(s)	25, 264, 317, 730, 764, 1086
TatI	WGTACW	2 cut(s)	17, 369
TauI	GCSGC	1 cut(s)	994
TfiI	GAWTC	2 cut(s)	162, 628
Tru1I	TTAA	3 cut(s)	681, 920, 1174
Tru9I	TTAA	3 cut(s)	681, 920, 1174
TscAI	CASTG	4 cut(s)	101, 330, 844, 877
TseFI	GTSAC	2 cut(s)	40, 881
TseI	GCWGC	6 cut(s)	234, 343, 415, 634, 637, 1000
Tsp45I	GTSAC	2 cut(s)	40, 881
TspDTI	ATGAA	4 cut(s)	214, 626, 689, 1152
TspRI	CASTG	4 cut(s)	101, 330, 844, 877
XapI	RAATTY	1 cut(s)	764
XceI	RCATGY	2 cut(s)	1007, 1153
XcmI	CCANNNNNNNNNTGG	1 cut(s)	595
XmnI	GAANNNNTTC	1 cut(s)	1143
XspI	CTAG	2 cut(s)	71, 963
ZrmI	AGTACT	2 cut(s)	19, 371
Zsp2I	ATGCAT	2 cut(s)	706, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.