Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008629.1

Orthogroup ID

OG0013526

Physical Location & Seq

Genomic Coordinates Forward (+)

65119 .. 66045

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008629.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

atgggtagaggaagaagtactacttcaagtttcaagtgtagaataatcactaggctgcttccgcttctgcttttgctattcctgttctgctcaactgttcagtgccaagaaactgagcctccatcgccgtcaaagcaccctcactccaagaacaacgagcttgaaagaatcattcttagtcttgtgttgggagtattgaccggactcatacttgctcttatctctgctttcattgtccactgctttgttcgctacattagcagaaccccaattctcaagggccctgtaattttctccccgaaaatcgctccgaaaacgctccaattagcactggcgagtgagaatcagttgcttggttcgagcccaaatggcaagtactacaggactgtgcttgacaatgggctcattattgcagtgaagcagctggagcccttttcggagtgtggctcacccgaggctcagagcaagtctgccaagagaaggatacagcaggagctggaagtgcttgctggcctgagacataggcatttgatgagtttgagggcttatgttcgcgagcacgataggttctctttggtttatgattttgtccccaatgggagcctggagaatgctatgaatagagttagggagaataacaaaaacaaatacacactttctacttggtacaatggtacctgtaaaatcccccccctatccattgttaacaaccagaatcaattcccctattggttctttctcaacggtcgcgatctcctcccacaacccagaaaccaacggtggatatcgagttatcgccacggccttctccttccgccctttccttgtctctcacacagttcgatgtttcgctttcggcctcgtgataacgacacagagccaacgtggccgcatgggccccacttcagtacggggcactctctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005798 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0007275 GO:0007389 GO:0008047 GO:0008150 GO:0008289 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009965 GO:0010016 GO:0010033 GO:0010051 GO:0010087 GO:0012505 GO:0016020 GO:0016192 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030234 GO:0030695 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0035091 GO:0042221 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050790 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0097708 GO:0098657 GO:0098772 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 Ank_5 ArfGap BAR_3 PH Pkinase

Protein Analysis

308

Amino Acids

35.16

Weight (kDa)

9.89

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13290 AT5G13290 AT5G13290
fragaria_vesca	FvH4_4g22780
malus_domestica	MD13G1129700.v1.1 MD16G1130000.v1.1
prunus_persica	Prupe.1G216600_v2.0.a1 Prupe.1G216600_v2.0.a1
pyrus_communis	pycom16g11060
rosa_chinensis	RchiOBHm_Chr4g0429001
rosa_laevigata	RLG00000007105
rosa_multiflora	Rmu_sc0008629.1_g000015 Rmu_sc0008629.1_g000016
rosa_roxburghii	Rroxscaffold_5G00370660
rosa_rugosa	Rorug04G0231900
rosa_samantha	Rh4BG294100 Rh4CG309600 Rh4DG291000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	674
AccB1I	GGYRCC	1 cut(s)	674
AccII	CGCG	2 cut(s)	555, 750
AciI	CCGC	3 cut(s)	62, 815, 890
AcoI	YGGCCR	1 cut(s)	887
AcuI	CTGAAG	1 cut(s)	889
AfaI	GTAC	5 cut(s)	19, 377, 668, 676, 910
AfiI	CCNNNNNNNGG	1 cut(s)	480
AgsI	TTSAA	3 cut(s)	27, 34, 164
AjnI	CCWGG	1 cut(s)	603
AluBI	AGCT	3 cut(s)	160, 424, 496
AluI	AGCT	3 cut(s)	160, 424, 496
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	2 cut(s)	511, 833
AlwNI	CAGNNNCTG	1 cut(s)	496
Ama87I	CYCGRG	1 cut(s)	452
AoxI	GGCC	6 cut(s)	280, 511, 802, 857, 887, 896
ApaI	GGGCCC	2 cut(s)	284, 900
ApeKI	GCWGC	2 cut(s)	55, 421
Asp700I	GAANNNNTTC	1 cut(s)	719
Asp718I	GGTACC	1 cut(s)	674
AspS9I	GGNCC	4 cut(s)	280, 281, 896, 897
AsuHPI	GGTGA	1 cut(s)	441
AvaI	CYCGRG	1 cut(s)	452
BaeGI	GKGCMC	3 cut(s)	284, 900, 918
BaeI	ACNNNNGTAYC	4 cut(s)	658, 658, 691, 691
BanI	GGYRCC	1 cut(s)	674
BanII	GRGCYC	5 cut(s)	284, 365, 405, 432, 900
BarI	GAAGNNNNNNTAC	1 cut(s)	36
BauI	CACGAG	1 cut(s)	861
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	2 cut(s)	42, 433
BccI	CCATC	1 cut(s)	130
BceAI	ACGGC	2 cut(s)	112, 817
BciT130I	CCWGG	1 cut(s)	605
BciVI	GTATCC	1 cut(s)	477
BcoDI	GTCTC	2 cut(s)	511, 833
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	2 cut(s)	379, 923
BfuI	GTATCC	1 cut(s)	477
BglI	GCCNNNNNGGC	3 cut(s)	369, 886, 895
BisI	GCNGC	3 cut(s)	56, 422, 890
BlsI	GCNGC	3 cut(s)	57, 423, 891
BmcAI	AGTACT	2 cut(s)	19, 377
Bme1390I	CCNGG	1 cut(s)	605
BmeT110I	CYCGRG	1 cut(s)	452
BmgT120I	GGNCC	4 cut(s)	280, 281, 896, 897
BmiI	GGNNCC	6 cut(s)	282, 429, 602, 676, 898, 899
BmrFI	CCNGG	1 cut(s)	605
BplI	GAGNNNNNCTC	2 cut(s)	431, 463
BpmI	CTGGAG	2 cut(s)	446, 626
BpuEI	CTTGAG	1 cut(s)	260
BsaJI	CCNNGG	2 cut(s)	453, 799
BsaWI	WCCGGW	1 cut(s)	200
BsaXI	ACNNNNNCTCC	4 cut(s)	103, 128, 133, 158
Bsc4I	CCNNNNNNNGG	1 cut(s)	480
Bse1I	ACTGG	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	605
BseDI	CCNNGG	2 cut(s)	453, 799
BseLI	CCNNNNNNNGG	1 cut(s)	480
BseMII	CTCAG	3 cut(s)	105, 473, 506
BseNI	ACTGG	1 cut(s)	336
BseRI	GAGGAG	1 cut(s)	746
BseSI	GKGCMC	3 cut(s)	284, 900, 918
BseXI	GCAGC	2 cut(s)	42, 433
Bsh1236I	CGCG	2 cut(s)	555, 750
Bsh1285I	CGRYCG	1 cut(s)	748
BshFI	GGCC	6 cut(s)	282, 513, 804, 859, 889, 898
BshNI	GGYRCC	1 cut(s)	674
BsiEI	CGRYCG	1 cut(s)	748
BsiHKAI	GWGCWC	1 cut(s)	561
BsiHKCI	CYCGRG	1 cut(s)	452
BsiSI	CCGG	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	1 cut(s)	480
BsmAI	GTCTC	2 cut(s)	511, 833
BsmFI	GGGAC	1 cut(s)	575
BsmI	GAATGC	1 cut(s)	616
BsnI	GGCC	6 cut(s)	282, 513, 804, 859, 889, 898
BsoBI	CYCGRG	1 cut(s)	452
Bsp120I	GGGCCC	2 cut(s)	280, 896
Bsp1286I	GDGCHC	7 cut(s)	284, 365, 405, 432, 561, 900, 918
Bsp143I	GATC	1 cut(s)	751
Bsp68I	TCGCGA	2 cut(s)	555, 750
BspACI	CCGC	3 cut(s)	62, 815, 890
BspANI	GGCC	6 cut(s)	282, 513, 804, 859, 889, 898
BspCNI	CTCAG	3 cut(s)	106, 472, 507
BspFNI	CGCG	2 cut(s)	555, 750
BspLI	GGNNCC	6 cut(s)	282, 429, 602, 676, 898, 899
BspT107I	GGYRCC	1 cut(s)	674
BsrI	ACTGG	1 cut(s)	336
BssECI	CCNNGG	2 cut(s)	453, 799
BssMI	GATC	1 cut(s)	751
BssSI	CACGAG	1 cut(s)	861
Bst2BI	CACGAG	1 cut(s)	861
Bst2UI	CCWGG	1 cut(s)	605
Bst4CI	ACNGT	5 cut(s)	97, 388, 746, 780, 839
BstC8I	GCNNGC	3 cut(s)	507, 511, 557
BstDEI	CTNAG	4 cut(s)	114, 176, 459, 515
BstDSI	CCRYGG	1 cut(s)	799
BstFNI	CGCG	2 cut(s)	555, 750
BstKTI	GATC	1 cut(s)	754
BstMAI	GTCTC	2 cut(s)	511, 833
BstMBI	GATC	1 cut(s)	751
BstMCI	CGRYCG	1 cut(s)	748
BstNI	CCWGG	1 cut(s)	605
BstSCI	CCNGG	1 cut(s)	603
BstSFI	CTRYAG	2 cut(s)	379, 923
BstSLI	GKGCMC	3 cut(s)	284, 900, 918
BstUI	CGCG	2 cut(s)	555, 750
BstV1I	GCAGC	2 cut(s)	42, 433
BsuI	GTATCC	1 cut(s)	477
BsuRI	GGCC	6 cut(s)	282, 513, 804, 859, 889, 898
BtgI	CCRYGG	1 cut(s)	799
BtgZI	GCGATG	1 cut(s)	108
BtsI	GCAGTG	2 cut(s)	238, 420
BtsIMutI	CAGTG	4 cut(s)	107, 238, 329, 420
BtuMI	TCGCGA	2 cut(s)	555, 750
Cac8I	GCNNGC	3 cut(s)	507, 511, 557
CaiI	CAGNNNCTG	1 cut(s)	496
Cfr13I	GGNCC	4 cut(s)	280, 281, 896, 897
Csp6I	GTAC	5 cut(s)	18, 376, 667, 675, 909
CviAII	CATG	1 cut(s)	893
CviQI	GTAC	5 cut(s)	18, 376, 667, 675, 909
DdeI	CTNAG	4 cut(s)	114, 176, 459, 515
DpnI	GATC	1 cut(s)	753
DpnII	GATC	1 cut(s)	751
EaeI	YGGCCR	1 cut(s)	887
EciI	GGCGGA	1 cut(s)	804
Eco24I	GRGCYC	5 cut(s)	284, 365, 405, 432, 900
Eco32I	GATATC	1 cut(s)	786
Eco57I	CTGAAG	1 cut(s)	889
Eco88I	CYCGRG	1 cut(s)	452
EcoO109I	RGGNCCY	3 cut(s)	280, 281, 897
EcoRII	CCWGG	1 cut(s)	603
EcoRV	GATATC	1 cut(s)	786
EcoT38I	GRGCYC	5 cut(s)	284, 365, 405, 432, 900
FaeI	CATG	1 cut(s)	896
FaiI	YATR	6 cut(s)	209, 522, 549, 582, 617, 894
FalI	AAGNNNNNCTT	2 cut(s)	7, 39
FaqI	GGGAC	1 cut(s)	575
FatI	CATG	1 cut(s)	892
Fnu4HI	GCNGC	3 cut(s)	56, 422, 890
FriOI	GRGCYC	5 cut(s)	284, 365, 405, 432, 900
Fsp4HI	GCNGC	3 cut(s)	56, 422, 890
FspBI	CTAG	1 cut(s)	51
GluI	GCNGC	3 cut(s)	56, 422, 890
GsuI	CTGGAG	2 cut(s)	446, 626
HaeIII	GGCC	6 cut(s)	282, 513, 804, 859, 889, 898
HapII	CCGG	1 cut(s)	201
Hin1II	CATG	1 cut(s)	896
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HinfI	GANTC	4 cut(s)	168, 204, 343, 715
HpaI	GTTAAC	1 cut(s)	706
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	1 cut(s)	441
Hpy166II	GTNNAC	2 cut(s)	238, 706
Hpy188I	TCNGA	3 cut(s)	312, 439, 462
Hpy188III	TCNNGA	3 cut(s)	554, 749, 863
Hpy8I	GTNNAC	2 cut(s)	238, 706
HpyAV	CCTTC	3 cut(s)	474, 815, 821
HpyCH4III	ACNGT	5 cut(s)	97, 388, 746, 780, 839
HpyCH4IV	ACGT	1 cut(s)	884
HpyCH4V	TGCA	1 cut(s)	413
HpyF3I	CTNAG	4 cut(s)	114, 176, 459, 515
HpySE526I	ACGT	1 cut(s)	884
Hsp92II	CATG	1 cut(s)	896
KpnI	GGTACC	1 cut(s)	678
KspAI	GTTAAC	1 cut(s)	706
Kzo9I	GATC	1 cut(s)	751
LmnI	GCTCC	5 cut(s)	313, 324, 427, 493, 600
Lsp1109I	GCAGC	2 cut(s)	42, 433
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	1 cut(s)	884
MalI	GATC	1 cut(s)	753
MboI	GATC	1 cut(s)	751
MboII	GAAGA	1 cut(s)	24
MhlI	GDGCHC	7 cut(s)	284, 365, 405, 432, 561, 900, 918
MluCI	AATT	4 cut(s)	270, 288, 323, 719
MlyI	GAGTC	1 cut(s)	198
MnlI	CCTC	6 cut(s)	129, 150, 448, 534, 767, 870
MroXI	GAANNNNTTC	1 cut(s)	719
MseI	TTAA	1 cut(s)	705
MspA1I	CMGCKG	1 cut(s)	424
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	605
Mva1269I	GAATGC	1 cut(s)	616
MvaI	CCWGG	1 cut(s)	605
MvnI	CGCG	2 cut(s)	555, 750
NdeII	GATC	1 cut(s)	751
NlaIII	CATG	1 cut(s)	896
NlaIV	GGNNCC	6 cut(s)	282, 429, 602, 676, 898, 899
NruI	TCGCGA	2 cut(s)	555, 750
PctI	GAATGC	1 cut(s)	616
PdmI	GAANNNNTTC	1 cut(s)	719
PfeI	GAWTC	3 cut(s)	168, 343, 715
PkrI	GCNGC	3 cut(s)	57, 423, 891
PleI	GAGTC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	603
PspGI	CCWGG	1 cut(s)	603
PspN4I	GGNNCC	6 cut(s)	282, 429, 602, 676, 898, 899
PspOMI	GGGCCC	2 cut(s)	280, 896
PspPI	GGNCC	4 cut(s)	280, 281, 896, 897
PstNI	CAGNNNCTG	1 cut(s)	496
PvuII	CAGCTG	1 cut(s)	424
RruI	TCGCGA	2 cut(s)	555, 750
RsaI	GTAC	5 cut(s)	19, 377, 668, 676, 910
RsaNI	GTAC	5 cut(s)	18, 376, 667, 675, 909
SaqAI	TTAA	1 cut(s)	705
SatI	GCNGC	3 cut(s)	56, 422, 890
Sau3AI	GATC	1 cut(s)	751
Sau96I	GGNCC	4 cut(s)	280, 281, 896, 897
ScaI	AGTACT	2 cut(s)	19, 377
SchI	GAGTC	1 cut(s)	198
ScrFI	CCNGG	1 cut(s)	605
SduI	GDGCHC	7 cut(s)	284, 365, 405, 432, 561, 900, 918
SetI	ASST	6 cut(s)	162, 426, 498, 569, 680, 887
SfcI	CTRYAG	2 cut(s)	379, 923
SfiI	GGCCNNNNNGGCC	1 cut(s)	895
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	4 cut(s)	270, 288, 323, 719
SsiI	CCGC	3 cut(s)	62, 815, 890
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	603
TaaI	ACNGT	5 cut(s)	97, 388, 746, 780, 839
TaiI	ACGT	1 cut(s)	887
TaqI	TCGA	3 cut(s)	359, 788, 842
TasI	AATT	4 cut(s)	270, 288, 323, 719
TatI	WGTACW	2 cut(s)	17, 375
TauI	GCSGC	1 cut(s)	892
TfiI	GAWTC	3 cut(s)	168, 343, 715
Tru1I	TTAA	1 cut(s)	705
Tru9I	TTAA	1 cut(s)	705
TscAI	CASTG	4 cut(s)	107, 245, 336, 420
TseI	GCWGC	2 cut(s)	55, 421
TspDTI	ATGAA	2 cut(s)	220, 632
TspRI	CASTG	4 cut(s)	107, 245, 336, 420
XcmI	CCANNNNNNNNNTGG	1 cut(s)	601
XmnI	GAANNNNTTC	1 cut(s)	719
XspI	CTAG	1 cut(s)	51
ZrmI	AGTACT	2 cut(s)	19, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.