Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0013526

Physical Location & Seq

Genomic Coordinates Reverse (-)

39706457 .. 39708686

Gene Structure 2230 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0231900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAGGGATGCTATAAAGAGGACAATATCCCCTGCCAGATTGAAGAGGTTATTTGATTTTAATTTTACAACAAAGTGTACTTATTTGTTACTGCTTTGCATTGTTTTTGTTGCGCTGTTTCATGCAGTTAGGATAACATTTGTTCTTCTTGCTTTTCAATTTAGTCTCTTCTTGGGTTCTTTTGGAGCTGCAAATAACGAGGAAGAACTGAACAGGTTGAACATTACTCACATTTTGACCGTGGGTAGTGCAATGCCTCCTGCATATCCAAATGATTTTGTCTATAAAGTTTTAAAAGTTTCTGACGGACCAAGTACAAACATAAAACAGCACTTTGATGAGTGTTTCGATTACATTGAGGAAGCTAAAAGATCTGGTGGCAGTGTGCTGGTTCATTGCTTTGTGGGAAGATCCAGAAGTGTGGCTGTTGTTGTTCCTTATCTTCTGAAAAAGCACGGTATGACCCTCTTCGAAGCTCTTGATCATGTGAAGAGTGGACGAGCACGGGCAGCTCCTAATGCTGGTTTCAGTACACAGCTGTATGAATATGAAATGTTTCTTTCTGGTAAGTCTTTATCTCCTAAGTGGCTCCTTCTCAAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005798 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0007275 GO:0007389 GO:0008047 GO:0008150 GO:0008289 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009965 GO:0010016 GO:0010033 GO:0010051 GO:0010087 GO:0012505 GO:0016020 GO:0016192 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030234 GO:0030695 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0035091 GO:0042221 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050790 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0097708 GO:0098657 GO:0098772 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 Ank_5 ArfGap BAR_3 PH Pkinase

Protein Analysis

201

Amino Acids

22.66

Weight (kDa)

9.41

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	56 - 184	2.1e-28	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0013526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13290 AT5G13290 AT5G13290
fragaria_vesca	FvH4_4g22780
malus_domestica	MD13G1129700.v1.1 MD16G1130000.v1.1
prunus_persica	Prupe.1G216600_v2.0.a1 Prupe.1G216600_v2.0.a1
pyrus_communis	pycom16g11060
rosa_chinensis	RchiOBHm_Chr4g0429001
rosa_laevigata	RLG00000007105
rosa_multiflora	Rmu_sc0008629.1_g000015 Rmu_sc0008629.1_g000016
rosa_roxburghii	Rroxscaffold_5G00370660
rosa_rugosa	Rorug04G0231900
rosa_samantha	Rh4BG294100 Rh4CG309600 Rh4DG291000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	405
AfaI	GTAC	3 cut(s)	79, 316, 532
AfiI	CCNNNNNNNGG	1 cut(s)	521
AgsI	TTSAA	3 cut(s)	43, 158, 220
AluBI	AGCT	5 cut(s)	188, 365, 476, 512, 538
AluI	AGCT	5 cut(s)	188, 365, 476, 512, 538
Alw21I	GWGCWC	1 cut(s)	505
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	1 cut(s)	405
ApeKI	GCWGC	2 cut(s)	188, 509
Asp700I	GAANNNNTTC	1 cut(s)	555
AspLEI	GCGC	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	308
AsuII	TTCGAA	1 cut(s)	471
AvaII	GGWCC	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	505
BbvI	GCAGC	2 cut(s)	175, 521
BclI	TGATCA	1 cut(s)	481
BcoDI	GTCTC	1 cut(s)	170
BglII	AGATCT	1 cut(s)	371
BisI	GCNGC	2 cut(s)	189, 510
BlsI	GCNGC	2 cut(s)	190, 511
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	1 cut(s)	590
Bpu14I	TTCGAA	1 cut(s)	471
BsaJI	CCNNGG	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	1 cut(s)	521
Bse3DI	GCAATG	2 cut(s)	258, 394
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	521
BseMI	GCAATG	2 cut(s)	258, 394
BseXI	GCAGC	2 cut(s)	175, 521
BsiHKAI	GWGCWC	1 cut(s)	505
BslI	CCNNNNNNNGG	1 cut(s)	521
BsmAI	GTCTC	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	471
Bsp1286I	GDGCHC	1 cut(s)	505
Bsp143I	GATC	3 cut(s)	371, 410, 481
BspLI	GGNNCC	1 cut(s)	590
BspPI	GGATC	1 cut(s)	405
BspT104I	TTCGAA	1 cut(s)	471
BsrDI	GCAATG	2 cut(s)	258, 394
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	3 cut(s)	371, 410, 481
Bst4CI	ACNGT	2 cut(s)	241, 458
Bst6I	CTCTTC	4 cut(s)	38, 173, 473, 485
BstBI	TTCGAA	1 cut(s)	471
BstDEI	CTNAG	1 cut(s)	582
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	3 cut(s)	374, 413, 484
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	3 cut(s)	371, 410, 481
BstMWI	GCNNNNNNNGC	2 cut(s)	509, 518
BstV1I	GCAGC	2 cut(s)	175, 521
BstX2I	RGATCY	2 cut(s)	371, 410
BstXI	CCANNNNNNTGG	1 cut(s)	421
BstYI	RGATCY	2 cut(s)	371, 410
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	13
BtsI	GCAGTG	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	388
CfoI	GCGC	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	308
Csp6I	GTAC	3 cut(s)	78, 315, 531
CviAII	CATG	2 cut(s)	122, 485
CviJI	RGCY	7 cut(s)	188, 365, 425, 476, 512, 538, 589
CviKI_1	RGCY	7 cut(s)	188, 365, 425, 476, 512, 538, 589
CviQI	GTAC	3 cut(s)	78, 315, 531
DdeI	CTNAG	1 cut(s)	582
DpnI	GATC	3 cut(s)	373, 412, 483
DpnII	GATC	3 cut(s)	371, 410, 481
DraI	TTTAAA	1 cut(s)	294
Eam1104I	CTCTTC	4 cut(s)	38, 173, 473, 485
EarI	CTCTTC	4 cut(s)	38, 173, 473, 485
Eco47I	GGWCC	1 cut(s)	308
FaeI	CATG	2 cut(s)	125, 488
FaiI	YATR	9 cut(s)	14, 123, 265, 285, 323, 461, 486, 543, 549
FatI	CATG	2 cut(s)	121, 484
FbaI	TGATCA	1 cut(s)	481
Fnu4HI	GCNGC	2 cut(s)	189, 510
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	2 cut(s)	189, 510
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	2 cut(s)	189, 510
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	2 cut(s)	125, 488
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
Hpy166II	GTNNAC	3 cut(s)	78, 497, 533
Hpy188I	TCNGA	2 cut(s)	304, 447
Hpy188III	TCNNGA	2 cut(s)	414, 479
Hpy8I	GTNNAC	3 cut(s)	78, 497, 533
HpyAV	CCTTC	1 cut(s)	602
HpyCH4III	ACNGT	2 cut(s)	241, 458
HpyCH4V	TGCA	5 cut(s)	99, 125, 191, 251, 263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	509, 518
HpyF3I	CTNAG	1 cut(s)	582
Hsp92II	CATG	2 cut(s)	125, 488
HspAI	GCGC	1 cut(s)	113
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	3 cut(s)	371, 410, 481
LmnI	GCTCC	3 cut(s)	185, 517, 594
LpnPI	CCDG	9 cut(s)	45, 49, 199, 273, 360, 374, 427, 507, 549
Lsp1109I	GCAGC	2 cut(s)	175, 521
MaeIII	GTNAC	1 cut(s)	87
MalI	GATC	3 cut(s)	373, 412, 483
MboI	GATC	3 cut(s)	371, 410, 481
MboII	GAAGA	8 cut(s)	55, 137, 160, 215, 420, 434, 460, 502
MflI	RGATCY	2 cut(s)	371, 410
MhlI	GDGCHC	1 cut(s)	505
MluCI	AATT	3 cut(s)	61, 158, 601
MnlI	CCTC	6 cut(s)	12, 39, 193, 267, 352, 476
MroXI	GAANNNNTTC	1 cut(s)	555
MseI	TTAA	2 cut(s)	60, 293
MslI	CAYNNNNRTG	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	538
MwoI	GCNNNNNNNGC	2 cut(s)	509, 518
NdeII	GATC	3 cut(s)	371, 410, 481
NlaIII	CATG	2 cut(s)	125, 488
NlaIV	GGNNCC	1 cut(s)	590
NspV	TTCGAA	1 cut(s)	471
PdmI	GAANNNNTTC	1 cut(s)	555
PkrI	GCNGC	2 cut(s)	190, 511
PspN4I	GGNNCC	1 cut(s)	590
PspPI	GGNCC	1 cut(s)	308
PsuI	RGATCY	2 cut(s)	371, 410
PvuII	CAGCTG	1 cut(s)	538
RsaI	GTAC	3 cut(s)	79, 316, 532
RsaNI	GTAC	3 cut(s)	78, 315, 531
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	60, 293
SatI	GCNGC	2 cut(s)	189, 510
Sau3AI	GATC	3 cut(s)	371, 410, 481
Sau96I	GGNCC	1 cut(s)	308
SduI	GDGCHC	1 cut(s)	505
SetI	ASST	7 cut(s)	50, 190, 218, 367, 478, 514, 540
SfuI	TTCGAA	1 cut(s)	471
SinI	GGWCC	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	336
Sse9I	AATT	3 cut(s)	61, 158, 601
TaaI	ACNGT	2 cut(s)	241, 458
TaqI	TCGA	2 cut(s)	348, 471
TasI	AATT	3 cut(s)	61, 158, 601
TatI	WGTACW	3 cut(s)	77, 314, 530
Tru1I	TTAA	2 cut(s)	60, 293
Tru9I	TTAA	2 cut(s)	60, 293
TscAI	CASTG	1 cut(s)	388
TseI	GCWGC	2 cut(s)	188, 509
TspDTI	ATGAA	4 cut(s)	110, 383, 558, 564
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	1 cut(s)	388
VpaK11BI	GGWCC	1 cut(s)	308
XmnI	GAANNNNTTC	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.