Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0013526

Physical Location & Seq

Genomic Coordinates Reverse (-)

9808909 .. 9812041

Gene Structure 3133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1129700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGATAGAAGAAGAAGAAGAAGAAGCACCTCGGAAATGAACAATCCAATCGCAAGGCTTCTCCTTTTGCTATTGATTTTCTGCTGCCGGCAAGGGGCTGTGCAGTCCCAAGAAACCGAACCTCCGTCACCGGCGAAGCATCCCCACTCGAAGAACGAGCTCCAAAGAATCATTCTGAGCATCGTGTTGGGAGTCCTGACCGGACTAATTTGTGCCCTCCTCACTGCACTCTTAGTCCGGTGCTTTGTCCGCTACATCAGCAGAACCCCAATTCTCAAAGGCCCCGTCATATTCTCCCCGAAAATCGACCCCAAAACGCTCCAATTAGCACTAGCTAGTGAAAACCGGTTGCTGGGTTCTAGCCCCAATGGGAAGTACTGCAGGACTGTTCTGGACACCGGGCTGATTATTGCAGTCAAGCAGCTCGGACCCTTTTCAGAGTGTGGCTCGCCGGAGGCTCAGAGCAAGGCAGCGAAGCGGCGGATACAGCAGGAGCTTGAAGTGCTTGCTGGCCTGAGACACAGGCATTTGATGAGCCTGCGGGCTTATGTTCGCGAACACGATAGGTTCTCTTTGGTTTATGATTTTGTGCCTAATGGGAGCTTGGAGGATGCTATGAATAGAGTTAGAGAAACCCAGTTGCAGCTCAGTTGGGAAGTTCGGCTTCGGATTGCTGTCGGGGTGATTAAGGGGCTTCAGTATCTGCATTCGTATGTTCCTCAGATTATGCATTACAATTTAAAGCCTACAAATGTTATGTTGGATTCGGAGTTTGAGCCGAGGTTGGGAGATTACGGGTTGGCCAAGCTTGCGCCTTATTTGACTGGAGCAACATCTGGCTACAGTGCTCCAGAGTGTTTCCAGAATGGCAGGTACACCGATAAGAGCGACATTTTCAGCTTTGGGATGATATTGGGCGTTTTGTTAACCGGAAGAGATCCAACCGATCCCTTCTTTGGGGAAGCAGCTAGTGGTGGAAGTTTAGGGCGCTGGTTGCGGCACTTGCAGCAAGCAGGCGAGGCACGGGAAGCATTAGATAAGAGTATAATAGGGGAAGAAGGGGAGGAAGATGATGAGATGTTGATGGCAGTGCGAATCGCAGTGGTATGCCTATCCGATCTGCCCGCAGAGAGACCCTCAAGCGATGAACTTGTTCACATGCTAACCCAACTGAACAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009888 GO:0009909 GO:0010073 GO:0010075 GO:0016020 GO:0032501 GO:0032502 GO:0033612 GO:0040008 GO:0044464 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0071944 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

395

Amino Acids

44.02

Weight (kDa)

8.57

Isoelectric Point (pI)

55.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	116 - 316	1.8e-30	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	152 - 332	3.4e-23	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13290 AT5G13290 AT5G13290
fragaria_vesca	FvH4_4g22780
malus_domestica	MD13G1129700.v1.1 MD16G1130000.v1.1
prunus_persica	Prupe.1G216600_v2.0.a1 Prupe.1G216600_v2.0.a1
pyrus_communis	pycom16g11060
rosa_chinensis	RchiOBHm_Chr4g0429001
rosa_laevigata	RLG00000007105
rosa_multiflora	Rmu_sc0008629.1_g000015 Rmu_sc0008629.1_g000016
rosa_roxburghii	Rroxscaffold_5G00370660
rosa_rugosa	Rorug04G0231900
rosa_samantha	Rh4BG294100 Rh4CG309600 Rh4DG291000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	861
AccII	CGCG	1 cut(s)	555
AciI	CCGC	6 cut(s)	250, 478, 481, 541, 997, 1125
AclWI	GGATC	2 cut(s)	932, 941
AcoI	YGGCCR	1 cut(s)	801
AcuI	CTGAAG	1 cut(s)	680
AfaI	GTAC	2 cut(s)	377, 875
AfiI	CCNNNNNNNGG	5 cut(s)	94, 352, 785, 956, 957
AgeI	ACCGGT	1 cut(s)	345
AgsI	TTSAA	1 cut(s)	500
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	9 cut(s)	160, 335, 424, 496, 603, 646, 808, 900, 968
AluI	AGCT	9 cut(s)	160, 335, 424, 496, 603, 646, 808, 900, 968
Alw21I	GWGCWC	2 cut(s)	162, 850
Alw26I	GTCTC	2 cut(s)	511, 1126
AlwI	GGATC	2 cut(s)	932, 941
AlwNI	CAGNNNCTG	1 cut(s)	703
AoxI	GGCC	3 cut(s)	280, 511, 801
ApeKI	GCWGC	6 cut(s)	84, 421, 470, 643, 965, 1006
ArsI	GACNNNNNNTTYG	2 cut(s)	270, 302
AsiGI	ACCGGT	1 cut(s)	345
Asp700I	GAANNNNTTC	1 cut(s)	1152
AspLEI	GCGC	2 cut(s)	814, 990
AspS9I	GGNCC	2 cut(s)	281, 428
AsuC2I	CCSGG	1 cut(s)	400
AsuHPI	GGTGA	2 cut(s)	120, 694
AvaII	GGWCC	1 cut(s)	428
BaeGI	GKGCMC	1 cut(s)	217
BalI	TGGCCA	1 cut(s)	803
BanII	GRGCYC	1 cut(s)	162
Bbv12I	GWGCWC	2 cut(s)	162, 850
BbvI	GCAGC	6 cut(s)	71, 433, 482, 655, 977, 1018
BccI	CCATC	1 cut(s)	1078
BciVI	GTATCC	1 cut(s)	477
BcnI	CCSGG	1 cut(s)	400
BcoDI	GTCTC	2 cut(s)	511, 1126
BfaI	CTAG	4 cut(s)	332, 336, 360, 969
BfmI	CTRYAG	2 cut(s)	379, 841
BfoI	RGCGCY	1 cut(s)	991
BfuAI	ACCTGC	1 cut(s)	861
BfuI	GTATCC	1 cut(s)	477
BisI	GCNGC	8 cut(s)	85, 422, 471, 479, 644, 966, 998, 1007
BlsI	GCNGC	8 cut(s)	86, 423, 472, 480, 645, 967, 999, 1008
BmcAI	AGTACT	1 cut(s)	377
Bme1390I	CCNGG	1 cut(s)	400
Bme18I	GGWCC	1 cut(s)	428
BmgT120I	GGNCC	2 cut(s)	281, 428
BmiI	GGNNCC	2 cut(s)	283, 430
BmrFI	CCNGG	1 cut(s)	400
BmrI	ACTGGG	1 cut(s)	631
BmsI	GCATC	3 cut(s)	148, 189, 601
BmuI	ACTGGG	1 cut(s)	631
BplI	GAGNNNNNCTC	4 cut(s)	431, 463, 1121, 1153
BpmI	CTGGAG	2 cut(s)	834, 846
BpuEI	CTTGAG	1 cut(s)	1123
BpuMI	CCSGG	1 cut(s)	400
BsaI	GGTCTC	1 cut(s)	1126
BsaJI	CCNNGG	2 cut(s)	30, 779
BsaWI	WCCGGW	4 cut(s)	200, 237, 345, 929
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	5 cut(s)	94, 352, 785, 956, 957
Bse118I	RCCGGY	3 cut(s)	87, 130, 345
Bse1I	ACTGG	2 cut(s)	637, 829
BseDI	CCNNGG	2 cut(s)	30, 779
BseGI	GGATG	3 cut(s)	139, 616, 912
BseLI	CCNNNNNNNGG	5 cut(s)	94, 352, 785, 956, 957
BseMII	CTCAG	5 cut(s)	167, 473, 506, 661, 734
BseNI	ACTGG	2 cut(s)	637, 829
BseRI	GAGGAG	1 cut(s)	209
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	6 cut(s)	71, 433, 482, 655, 977, 1018
BseYI	CCCAGC	1 cut(s)	352
BsgI	GTGCAG	2 cut(s)	122, 210
Bsh1236I	CGCG	1 cut(s)	555
BshFI	GGCC	3 cut(s)	282, 513, 803
BshTI	ACCGGT	1 cut(s)	345
BsiHKAI	GWGCWC	2 cut(s)	162, 850
BsiSI	CCGG	8 cut(s)	88, 131, 201, 238, 346, 399, 452, 930
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	5 cut(s)	94, 352, 785, 956, 957
BsmAI	GTCTC	2 cut(s)	511, 1126
BsmFI	GGGAC	1 cut(s)	91
BsmI	GAATGC	1 cut(s)	706
BsnI	GGCC	3 cut(s)	282, 513, 803
Bso31I	GGTCTC	1 cut(s)	1126
Bsp1286I	GDGCHC	3 cut(s)	162, 217, 850
Bsp143I	GATC	3 cut(s)	937, 946, 1117
Bsp68I	TCGCGA	1 cut(s)	555
BspACI	CCGC	6 cut(s)	250, 478, 481, 541, 997, 1125
BspANI	GGCC	3 cut(s)	282, 513, 803
BspCNI	CTCAG	5 cut(s)	168, 472, 507, 660, 733
BspFNI	CGCG	1 cut(s)	555
BspLI	GGNNCC	2 cut(s)	283, 430
BspMAI	CTGCAG	1 cut(s)	383
BspMI	ACCTGC	1 cut(s)	861
BspPI	GGATC	2 cut(s)	932, 941
BspTNI	GGTCTC	1 cut(s)	1126
BsrFI	RCCGGY	3 cut(s)	87, 130, 345
BsrI	ACTGG	2 cut(s)	637, 829
BssAI	RCCGGY	3 cut(s)	87, 130, 345
BssECI	CCNNGG	2 cut(s)	30, 779
BssMI	GATC	3 cut(s)	937, 946, 1117
Bst4CI	ACNGT	3 cut(s)	388, 845, 1178
Bst6I	CTCTTC	1 cut(s)	928
BstDEI	CTNAG	6 cut(s)	176, 232, 459, 515, 647, 720
BstF5I	GGATG	3 cut(s)	139, 616, 912
BstFNI	CGCG	1 cut(s)	555
BstH2I	RGCGCY	1 cut(s)	991
BstHHI	GCGC	2 cut(s)	814, 990
BstKTI	GATC	3 cut(s)	940, 949, 1120
BstMAI	GTCTC	2 cut(s)	511, 1126
BstMBI	GATC	3 cut(s)	937, 946, 1117
BstNSI	RCATGY	1 cut(s)	1162
BstSCI	CCNGG	1 cut(s)	398
BstSFI	CTRYAG	2 cut(s)	379, 841
BstSLI	GKGCMC	1 cut(s)	217
BstUI	CGCG	1 cut(s)	555
BstV1I	GCAGC	6 cut(s)	71, 433, 482, 655, 977, 1018
BstX2I	RGATCY	1 cut(s)	937
BstYI	RGATCY	1 cut(s)	937
BsuI	GTATCC	1 cut(s)	477
BsuRI	GGCC	3 cut(s)	282, 513, 803
BtgZI	GCGATG	1 cut(s)	1158
BtsCI	GGATG	3 cut(s)	139, 616, 912
BtsI	GCAGTG	3 cut(s)	222, 1095, 1107
BtsIMutI	CAGTG	4 cut(s)	222, 850, 1095, 1107
BtuMI	TCGCGA	1 cut(s)	555
BveI	ACCTGC	1 cut(s)	861
CaiI	CAGNNNCTG	1 cut(s)	703
CfoI	GCGC	2 cut(s)	814, 990
Cfr10I	RCCGGY	3 cut(s)	87, 130, 345
Cfr13I	GGNCC	2 cut(s)	281, 428
Csp6I	GTAC	2 cut(s)	376, 874
CspAI	ACCGGT	1 cut(s)	345
CviAII	CATG	1 cut(s)	1159
CviQI	GTAC	2 cut(s)	376, 874
DdeI	CTNAG	6 cut(s)	176, 232, 459, 515, 647, 720
DpnI	GATC	3 cut(s)	939, 948, 1119
DpnII	GATC	3 cut(s)	937, 946, 1117
DraI	TTTAAA	1 cut(s)	741
EaeI	YGGCCR	1 cut(s)	801
Eam1104I	CTCTTC	1 cut(s)	928
EarI	CTCTTC	1 cut(s)	928
EciI	GGCGGA	1 cut(s)	496
Ecl136II	GAGCTC	1 cut(s)	160
Eco24I	GRGCYC	1 cut(s)	162
Eco31I	GGTCTC	1 cut(s)	1126
Eco47I	GGWCC	1 cut(s)	428
Eco53kI	GAGCTC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	680
EcoICRI	GAGCTC	1 cut(s)	160
EcoO109I	RGGNCCY	1 cut(s)	281
EcoT22I	ATGCAT	1 cut(s)	732
EcoT38I	GRGCYC	1 cut(s)	162
FaeI	CATG	1 cut(s)	1162
FalI	AAGNNNNNCTT	2 cut(s)	648, 680
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	1 cut(s)	1158
FauI	CCCGC	2 cut(s)	534, 1132
Fnu4HI	GCNGC	8 cut(s)	85, 422, 471, 479, 644, 966, 998, 1007
FokI	GGATG	3 cut(s)	126, 623, 919
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	8 cut(s)	85, 422, 471, 479, 644, 966, 998, 1007
FspBI	CTAG	4 cut(s)	332, 336, 360, 969
GlaI	GCGC	2 cut(s)	813, 989
GluI	GCNGC	8 cut(s)	85, 422, 471, 479, 644, 966, 998, 1007
GsaI	CCCAGC	1 cut(s)	356
GsuI	CTGGAG	2 cut(s)	834, 846
HaeII	RGCGCY	1 cut(s)	991
HaeIII	GGCC	3 cut(s)	282, 513, 803
HapII	CCGG	8 cut(s)	88, 131, 201, 238, 346, 399, 452, 930
HhaI	GCGC	2 cut(s)	814, 990
Hin1II	CATG	1 cut(s)	1162
Hin6I	GCGC	2 cut(s)	812, 988
HinP1I	GCGC	2 cut(s)	812, 988
HincII	GTYRAC	1 cut(s)	927
HindII	GTYRAC	1 cut(s)	927
HindIII	AAGCTT	1 cut(s)	806
HinfI	GANTC	4 cut(s)	168, 192, 764, 1095
HpaI	GTTAAC	1 cut(s)	927
HpaII	CCGG	8 cut(s)	88, 131, 201, 238, 346, 399, 452, 930
HphI	GGTGA	2 cut(s)	120, 694
Hpy166II	GTNNAC	3 cut(s)	876, 927, 1156
Hpy188I	TCNGA	9 cut(s)	34, 177, 428, 439, 462, 669, 723, 769, 1117
Hpy188III	TCNNGA	5 cut(s)	196, 392, 554, 851, 862
Hpy8I	GTNNAC	3 cut(s)	876, 927, 1156
HpyAV	CCTTC	2 cut(s)	961, 1052
HpyCH4III	ACNGT	3 cut(s)	388, 845, 1178
HpyCH4V	TGCA	8 cut(s)	103, 227, 381, 413, 643, 706, 730, 1006
HpyF3I	CTNAG	6 cut(s)	176, 232, 459, 515, 647, 720
Hsp92II	CATG	1 cut(s)	1162
HspAI	GCGC	2 cut(s)	812, 988
KroI	GCCGGC	1 cut(s)	87
KroNI	GCCGGC	1 cut(s)	89
KspAI	GTTAAC	1 cut(s)	927
Kzo9I	GATC	3 cut(s)	937, 946, 1117
LmnI	GCTCC	6 cut(s)	165, 324, 493, 600, 827, 853
Lsp1109I	GCAGC	6 cut(s)	71, 433, 482, 655, 977, 1018
LweI	GCATC	3 cut(s)	148, 189, 601
MaeI	CTAG	4 cut(s)	332, 336, 360, 969
MaeIII	GTNAC	1 cut(s)	126
MalI	GATC	3 cut(s)	939, 948, 1119
MboI	GATC	3 cut(s)	937, 946, 1117
MboII	GAAGA	9 cut(s)	21, 24, 27, 30, 33, 163, 945, 1067, 1079
MflI	RGATCY	1 cut(s)	937
MhlI	GDGCHC	3 cut(s)	162, 217, 850
MlsI	TGGCCA	1 cut(s)	803
MluCI	AATT	4 cut(s)	207, 270, 323, 736
MluNI	TGGCCA	1 cut(s)	803
MlyI	GAGTC	1 cut(s)	201
MmeI	TCCRAC	2 cut(s)	741, 965
Mox20I	TGGCCA	1 cut(s)	803
Mph1103I	ATGCAT	1 cut(s)	732
MroNI	GCCGGC	1 cut(s)	87
MroXI	GAANNNNTTC	1 cut(s)	1152
MscI	TGGCCA	1 cut(s)	803
MseI	TTAA	3 cut(s)	687, 740, 926
MslI	CAYNNNNRTG	1 cut(s)	711
Msp20I	TGGCCA	1 cut(s)	803
MspI	CCGG	8 cut(s)	88, 131, 201, 238, 346, 399, 452, 930
MspR9I	CCNGG	1 cut(s)	400
Mva1269I	GAATGC	1 cut(s)	706
MvnI	CGCG	1 cut(s)	555
NaeI	GCCGGC	1 cut(s)	89
NciI	CCSGG	1 cut(s)	400
NdeII	GATC	3 cut(s)	937, 946, 1117
NgoMIV	GCCGGC	1 cut(s)	87
NlaIII	CATG	1 cut(s)	1162
NlaIV	GGNNCC	2 cut(s)	283, 430
NmeAIII	GCCGAG	1 cut(s)	804
NmuCI	GTSAC	1 cut(s)	126
NruI	TCGCGA	1 cut(s)	555
NsiI	ATGCAT	1 cut(s)	732
NspI	RCATGY	1 cut(s)	1162
PctI	GAATGC	1 cut(s)	706
PdiI	GCCGGC	1 cut(s)	89
PdmI	GAANNNNTTC	1 cut(s)	1152
PfeI	GAWTC	3 cut(s)	168, 764, 1095
PinAI	ACCGGT	1 cut(s)	345
PkrI	GCNGC	8 cut(s)	86, 423, 472, 480, 645, 967, 999, 1008
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
Psp124BI	GAGCTC	1 cut(s)	162
PspFI	CCCAGC	1 cut(s)	352
PspN4I	GGNNCC	2 cut(s)	283, 430
PspPI	GGNCC	2 cut(s)	281, 428
PstI	CTGCAG	1 cut(s)	383
PstNI	CAGNNNCTG	1 cut(s)	703
PsuI	RGATCY	1 cut(s)	937
RruI	TCGCGA	1 cut(s)	555
RsaI	GTAC	2 cut(s)	377, 875
RsaNI	GTAC	2 cut(s)	376, 874
RseI	CAYNNNNRTG	1 cut(s)	711
SacI	GAGCTC	1 cut(s)	162
SaqAI	TTAA	3 cut(s)	687, 740, 926
SatI	GCNGC	8 cut(s)	85, 422, 471, 479, 644, 966, 998, 1007
Sau3AI	GATC	3 cut(s)	937, 946, 1117
Sau96I	GGNCC	2 cut(s)	281, 428
ScaI	AGTACT	1 cut(s)	377
SchI	GAGTC	1 cut(s)	201
ScrFI	CCNGG	1 cut(s)	400
SduI	GDGCHC	3 cut(s)	162, 217, 850
SfaNI	GCATC	3 cut(s)	148, 189, 601
SfcI	CTRYAG	2 cut(s)	379, 841
SgrAI	CRCCGGYG	1 cut(s)	130
SinI	GGWCC	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	711
SmlI	CTYRAG	1 cut(s)	1138
SmoI	CTYRAG	1 cut(s)	1138
Sse9I	AATT	4 cut(s)	207, 270, 323, 736
SsiI	CCGC	6 cut(s)	250, 478, 481, 541, 997, 1125
SspMI	CTAG	4 cut(s)	332, 336, 360, 969
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	398
TaaI	ACNGT	3 cut(s)	388, 845, 1178
TaqI	TCGA	2 cut(s)	149, 306
TasI	AATT	4 cut(s)	207, 270, 323, 736
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	2 cut(s)	481, 1000
TfiI	GAWTC	3 cut(s)	168, 764, 1095
Tru1I	TTAA	3 cut(s)	687, 740, 926
Tru9I	TTAA	3 cut(s)	687, 740, 926
TscAI	CASTG	4 cut(s)	229, 850, 1095, 1107
TseFI	GTSAC	1 cut(s)	126
TseI	GCWGC	6 cut(s)	84, 421, 470, 643, 965, 1006
Tsp45I	GTSAC	1 cut(s)	126
TspDTI	ATGAA	3 cut(s)	53, 632, 1161
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	4 cut(s)	229, 850, 1095, 1107
VpaK11BI	GGWCC	1 cut(s)	428
XceI	RCATGY	1 cut(s)	1162
XmnI	GAANNNNTTC	1 cut(s)	1152
XspI	CTAG	4 cut(s)	332, 336, 360, 969
ZrmI	AGTACT	1 cut(s)	377
Zsp2I	ATGCAT	1 cut(s)	732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.