Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0013526

Physical Location & Seq

Genomic Coordinates Forward (+)

57147079 .. 57150760

Gene Structure 3682 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG309600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGGTAGAGGAAGAAGTACTGCTTCAAGTTTCAAGTGTAGAATAATCACTAGGCTGCTTCCGCTTCTGCTTTTGCTATTCCTGTTCTGCTCAACTGTTCAGTGCCAAGAAACTGAGCCTCCATCGCCGTCAAAGCACCCTCACTCCAAGAACAACGAGCTTGAAAGAATCATTCTTAGTCTTGTGTTGGGAGTATTGACCGGACTCGTACTTGCTCTTATCTCTGCTTTCATTGTCCACTGCTTTGTTCGCTACATTAGCAGAACCCCAATTCTCAAGGGCCCTGTCATTTTCTCCCCGAAAATCGCTCCGAAAACGCTCCAATTAGCACTGGCGAGTGAGAATCAGTTGCTTGGTTCGAGCCCAAATGGCAAGTACTACAGGACTGTGCTTGACAATGGGCTCATTATTGCAGTGAAGCAGCTGGAGCCCTTTTCGGAGTGTGGCTCACCCGAGGCTCAGAGCAAGTCTGCCAAGAGAAGGATACAGCAGGAGCTGGAAGTGCTTGCTGGCCTGAGACATAGGCATTTGATGAGTTTGAGGGCTTATGTTCGCGAGCACGATAGGTTCTCTTTGGTTTATGATTTTGTCCCCAATGGGAGCCTGGAGAATGCTATGGATAGAGTTAGGGAGAATCAGTTGCAGCTCAGTTGGGAGGTTCGGCTTCGGATTGCAGTTGGGGTGATTAAGGGGCTTCAGTATCTTCATGCATATGTGCCTCAGATTATGCATAACAACTTGAAGCCGAGAAATGTTATGTTGGATGCTGAGTTTGAACCGAGGTTGGGAGATTATGGGTTGGCTAAGCTCACTCCCCATTTGGATGGGGCATTATCTGGTTACACTGCTCCAGAGTGTTTCCAGAATGACAGGTACACTGATAAGAGCGACATTTTCAGCTTTGGGATGATATTGGGAGTTTTACTAACCGCTAGAGACCCAACTGATCCCTTCTTTGGGGAAACATCTAGCGGAGGAAGTTTAGGACGGTGGCTGCGGCACTTGCAGCATGCAGGGGAGGCACGGGAAGCGTTAGATAAGAGCCTTATTGGGGAAGAAGGAGAGGAAGATGAAATGTTAATGGCAGTGAGAATTGCTGTCGTATGCTTATCAGATGTGCCAGCAGAAAGACCCTCAAGTGATGAACTTGTTCACATGCTAACCCAACTGCACAGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005798 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0007275 GO:0007389 GO:0008047 GO:0008150 GO:0008289 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009965 GO:0010016 GO:0010033 GO:0010051 GO:0010087 GO:0012505 GO:0016020 GO:0016192 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030234 GO:0030695 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0035091 GO:0042221 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050790 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0097708 GO:0098657 GO:0098772 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 Ank_5 ArfGap BAR_3 PH Pkinase

Protein Analysis

393

Amino Acids

43.96

Weight (kDa)

7.21

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	115 - 384	2.4e-29	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	118 - 310	2.8e-24	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13290 AT5G13290 AT5G13290
fragaria_vesca	FvH4_4g22780
malus_domestica	MD13G1129700.v1.1 MD16G1130000.v1.1
prunus_persica	Prupe.1G216600_v2.0.a1 Prupe.1G216600_v2.0.a1
pyrus_communis	pycom16g11060
rosa_chinensis	RchiOBHm_Chr4g0429001
rosa_laevigata	RLG00000007105
rosa_multiflora	Rmu_sc0008629.1_g000015 Rmu_sc0008629.1_g000016
rosa_roxburghii	Rroxscaffold_5G00370660
rosa_rugosa	Rorug04G0231900
rosa_samantha	Rh4BG294100 Rh4CG309600 Rh4DG291000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	555
AciI	CCGC	4 cut(s)	62, 930, 972, 997
AclWI	GGATC	1 cut(s)	941
AcuI	CTGAAG	1 cut(s)	680
AfaI	GTAC	4 cut(s)	19, 210, 377, 875
AfiI	CCNNNNNNNGG	5 cut(s)	480, 785, 956, 957, 1051
AgsI	TTSAA	5 cut(s)	27, 34, 164, 742, 776
AjnI	CCWGG	1 cut(s)	603
AluBI	AGCT	6 cut(s)	160, 424, 496, 646, 808, 900
AluI	AGCT	6 cut(s)	160, 424, 496, 646, 808, 900
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	2 cut(s)	511, 930
AlwI	GGATC	1 cut(s)	941
AlwNI	CAGNNNCTG	1 cut(s)	496
Ama87I	CYCGRG	1 cut(s)	452
AoxI	GGCC	2 cut(s)	280, 511
ApaI	GGGCCC	1 cut(s)	284
ApeKI	GCWGC	5 cut(s)	55, 421, 643, 994, 1006
Asp700I	GAANNNNTTC	1 cut(s)	1149
AspS9I	GGNCC	2 cut(s)	280, 281
AsuHPI	GGTGA	2 cut(s)	441, 694
AvaI	CYCGRG	1 cut(s)	452
BaeGI	GKGCMC	1 cut(s)	284
BanII	GRGCYC	4 cut(s)	284, 365, 405, 432
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	5 cut(s)	42, 433, 655, 981, 1018
BccI	CCATC	2 cut(s)	130, 818
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	605
BciVI	GTATCC	1 cut(s)	477
BcoDI	GTCTC	2 cut(s)	511, 930
BfaI	CTAG	3 cut(s)	51, 933, 969
BfmI	CTRYAG	1 cut(s)	379
BfuI	GTATCC	1 cut(s)	477
BglI	GCCNNNNNGGC	1 cut(s)	369
BisI	GCNGC	6 cut(s)	56, 422, 644, 995, 998, 1007
BlpI	GCTNAGC	1 cut(s)	804
BlsI	GCNGC	6 cut(s)	57, 423, 645, 996, 999, 1008
BmcAI	AGTACT	2 cut(s)	19, 377
Bme1390I	CCNGG	1 cut(s)	605
BmeT110I	CYCGRG	1 cut(s)	452
BmgT120I	GGNCC	2 cut(s)	280, 281
BmiI	GGNNCC	3 cut(s)	282, 429, 602
BmrFI	CCNGG	1 cut(s)	605
BmsI	GCATC	1 cut(s)	754
BplI	GAGNNNNNCTC	2 cut(s)	431, 463
BpmI	CTGGAG	3 cut(s)	446, 626, 834
Bpu1102I	GCTNAGC	1 cut(s)	804
BpuEI	CTTGAG	2 cut(s)	260, 1120
BsaI	GGTCTC	1 cut(s)	930
BsaJI	CCNNGG	2 cut(s)	453, 779
BsaWI	WCCGGW	1 cut(s)	200
BsaXI	ACNNNNNCTCC	6 cut(s)	103, 128, 133, 158, 623, 653
Bsc4I	CCNNNNNNNGG	5 cut(s)	480, 785, 956, 957, 1051
Bse1I	ACTGG	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	605
BseDI	CCNNGG	2 cut(s)	453, 779
BseGI	GGATG	3 cut(s)	769, 829, 912
BseLI	CCNNNNNNNGG	5 cut(s)	480, 785, 956, 957, 1051
BseMII	CTCAG	6 cut(s)	105, 473, 506, 661, 734, 759
BseNI	ACTGG	1 cut(s)	336
BseSI	GKGCMC	1 cut(s)	284
BseXI	GCAGC	5 cut(s)	42, 433, 655, 981, 1018
BsgI	GTGCAG	1 cut(s)	1154
Bsh1236I	CGCG	1 cut(s)	555
BshFI	GGCC	2 cut(s)	282, 513
BsiHKAI	GWGCWC	1 cut(s)	561
BsiHKCI	CYCGRG	1 cut(s)	452
BsiSI	CCGG	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	5 cut(s)	480, 785, 956, 957, 1051
BsmAI	GTCTC	2 cut(s)	511, 930
BsmFI	GGGAC	1 cut(s)	575
BsmI	GAATGC	1 cut(s)	616
BsnI	GGCC	2 cut(s)	282, 513
Bso31I	GGTCTC	1 cut(s)	930
BsoBI	CYCGRG	1 cut(s)	452
Bsp120I	GGGCCC	1 cut(s)	280
Bsp1286I	GDGCHC	5 cut(s)	284, 365, 405, 432, 561
Bsp143I	GATC	1 cut(s)	946
Bsp1720I	GCTNAGC	1 cut(s)	804
Bsp68I	TCGCGA	1 cut(s)	555
BspACI	CCGC	4 cut(s)	62, 930, 972, 997
BspANI	GGCC	2 cut(s)	282, 513
BspCNI	CTCAG	6 cut(s)	106, 472, 507, 660, 733, 760
BspFNI	CGCG	1 cut(s)	555
BspLI	GGNNCC	3 cut(s)	282, 429, 602
BspPI	GGATC	1 cut(s)	941
BspTNI	GGTCTC	1 cut(s)	930
BsrI	ACTGG	1 cut(s)	336
BssECI	CCNNGG	2 cut(s)	453, 779
BssMI	GATC	1 cut(s)	946
Bst2UI	CCWGG	1 cut(s)	605
Bst4CI	ACNGT	4 cut(s)	97, 388, 990, 1175
BstC8I	GCNNGC	5 cut(s)	507, 511, 557, 1011, 1122
BstDEI	CTNAG	8 cut(s)	114, 176, 459, 515, 647, 720, 768, 804
BstF5I	GGATG	3 cut(s)	769, 829, 912
BstFNI	CGCG	1 cut(s)	555
BstKTI	GATC	1 cut(s)	949
BstMAI	GTCTC	2 cut(s)	511, 930
BstMBI	GATC	1 cut(s)	946
BstNI	CCWGG	1 cut(s)	605
BstNSI	RCATGY	2 cut(s)	1013, 1159
BstSCI	CCNGG	1 cut(s)	603
BstSFI	CTRYAG	1 cut(s)	379
BstSLI	GKGCMC	1 cut(s)	284
BstUI	CGCG	1 cut(s)	555
BstV1I	GCAGC	5 cut(s)	42, 433, 655, 981, 1018
BstXI	CCANNNNNNTGG	1 cut(s)	824
BsuI	GTATCC	1 cut(s)	477
BsuRI	GGCC	2 cut(s)	282, 513
BtgZI	GCGATG	1 cut(s)	108
BtsCI	GGATG	3 cut(s)	769, 829, 912
BtsI	GCAGTG	4 cut(s)	238, 420, 843, 1092
BtsIMutI	CAGTG	7 cut(s)	107, 238, 329, 420, 843, 876, 1092
BtuMI	TCGCGA	1 cut(s)	555
Cac8I	GCNNGC	5 cut(s)	507, 511, 557, 1011, 1122
CaiI	CAGNNNCTG	1 cut(s)	496
Cfr13I	GGNCC	2 cut(s)	280, 281
Csp6I	GTAC	4 cut(s)	18, 209, 376, 874
CviAII	CATG	3 cut(s)	707, 1010, 1156
CviQI	GTAC	4 cut(s)	18, 209, 376, 874
DdeI	CTNAG	8 cut(s)	114, 176, 459, 515, 647, 720, 768, 804
DpnI	GATC	1 cut(s)	948
DpnII	GATC	1 cut(s)	946
Eco24I	GRGCYC	4 cut(s)	284, 365, 405, 432
Eco31I	GGTCTC	1 cut(s)	930
Eco57I	CTGAAG	1 cut(s)	680
Eco88I	CYCGRG	1 cut(s)	452
EcoO109I	RGGNCCY	2 cut(s)	280, 281
EcoRII	CCWGG	1 cut(s)	603
EcoT22I	ATGCAT	2 cut(s)	712, 732
EcoT38I	GRGCYC	4 cut(s)	284, 365, 405, 432
FaeI	CATG	3 cut(s)	710, 1013, 1159
FalI	AAGNNNNNCTT	2 cut(s)	7, 39
FaqI	GGGAC	1 cut(s)	575
FatI	CATG	3 cut(s)	706, 1009, 1155
FauNDI	CATATG	1 cut(s)	712
Fnu4HI	GCNGC	6 cut(s)	56, 422, 644, 995, 998, 1007
FokI	GGATG	3 cut(s)	776, 836, 919
FriOI	GRGCYC	4 cut(s)	284, 365, 405, 432
Fsp4HI	GCNGC	6 cut(s)	56, 422, 644, 995, 998, 1007
FspBI	CTAG	3 cut(s)	51, 933, 969
GluI	GCNGC	6 cut(s)	56, 422, 644, 995, 998, 1007
GsuI	CTGGAG	3 cut(s)	446, 626, 834
HaeIII	GGCC	2 cut(s)	282, 513
HapII	CCGG	1 cut(s)	201
Hin1II	CATG	3 cut(s)	710, 1013, 1159
HinfI	GANTC	4 cut(s)	168, 204, 343, 634
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	2 cut(s)	441, 694
Hpy166II	GTNNAC	3 cut(s)	238, 876, 1153
Hpy188I	TCNGA	6 cut(s)	312, 439, 462, 669, 723, 1114
Hpy188III	TCNNGA	3 cut(s)	554, 851, 862
Hpy8I	GTNNAC	3 cut(s)	238, 876, 1153
HpyAV	CCTTC	3 cut(s)	474, 961, 1052
HpyCH4III	ACNGT	4 cut(s)	97, 388, 990, 1175
HpyCH4V	TGCA	8 cut(s)	413, 643, 674, 710, 730, 1006, 1013, 1171
HpyF3I	CTNAG	8 cut(s)	114, 176, 459, 515, 647, 720, 768, 804
Hsp92II	CATG	3 cut(s)	710, 1013, 1159
Kzo9I	GATC	1 cut(s)	946
LmnI	GCTCC	6 cut(s)	313, 324, 427, 493, 600, 853
Lsp1109I	GCAGC	5 cut(s)	42, 433, 655, 981, 1018
LweI	GCATC	1 cut(s)	754
MaeI	CTAG	3 cut(s)	51, 933, 969
MaeIII	GTNAC	1 cut(s)	839
MalI	GATC	1 cut(s)	948
MboI	GATC	1 cut(s)	946
MboII	GAAGA	4 cut(s)	24, 695, 1067, 1079
MhlI	GDGCHC	5 cut(s)	284, 365, 405, 432, 561
MluCI	AATT	3 cut(s)	270, 323, 1092
MlyI	GAGTC	1 cut(s)	198
MmeI	TCCRAC	1 cut(s)	741
Mph1103I	ATGCAT	2 cut(s)	712, 732
MroXI	GAANNNNTTC	1 cut(s)	1149
MseI	TTAA	3 cut(s)	687, 1079, 1180
MslI	CAYNNNNRTG	2 cut(s)	711, 822
MspA1I	CMGCKG	1 cut(s)	424
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	605
Mva1269I	GAATGC	1 cut(s)	616
MvaI	CCWGG	1 cut(s)	605
MvnI	CGCG	1 cut(s)	555
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	1 cut(s)	946
NlaIII	CATG	3 cut(s)	710, 1013, 1159
NlaIV	GGNNCC	3 cut(s)	282, 429, 602
NmeAIII	GCCGAG	1 cut(s)	771
NruI	TCGCGA	1 cut(s)	555
NsiI	ATGCAT	2 cut(s)	712, 732
NspI	RCATGY	2 cut(s)	1013, 1159
PaeI	GCATGC	1 cut(s)	1013
PctI	GAATGC	1 cut(s)	616
PdmI	GAANNNNTTC	1 cut(s)	1149
PfeI	GAWTC	3 cut(s)	168, 343, 634
PkrI	GCNGC	6 cut(s)	57, 423, 645, 996, 999, 1008
PleI	GAGTC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	603
PspGI	CCWGG	1 cut(s)	603
PspN4I	GGNNCC	3 cut(s)	282, 429, 602
PspOMI	GGGCCC	1 cut(s)	280
PspPI	GGNCC	2 cut(s)	280, 281
PstNI	CAGNNNCTG	1 cut(s)	496
PvuII	CAGCTG	1 cut(s)	424
RruI	TCGCGA	1 cut(s)	555
RsaI	GTAC	4 cut(s)	19, 210, 377, 875
RsaNI	GTAC	4 cut(s)	18, 209, 376, 874
RseI	CAYNNNNRTG	2 cut(s)	711, 822
SaqAI	TTAA	3 cut(s)	687, 1079, 1180
SatI	GCNGC	6 cut(s)	56, 422, 644, 995, 998, 1007
Sau3AI	GATC	1 cut(s)	946
Sau96I	GGNCC	2 cut(s)	280, 281
ScaI	AGTACT	2 cut(s)	19, 377
SchI	GAGTC	1 cut(s)	198
ScrFI	CCNGG	1 cut(s)	605
SduI	GDGCHC	5 cut(s)	284, 365, 405, 432, 561
SfaNI	GCATC	1 cut(s)	754
SfcI	CTRYAG	1 cut(s)	379
SmiMI	CAYNNNNRTG	2 cut(s)	711, 822
SmlI	CTYRAG	2 cut(s)	275, 1135
SmoI	CTYRAG	2 cut(s)	275, 1135
SphI	GCATGC	1 cut(s)	1013
Sse9I	AATT	3 cut(s)	270, 323, 1092
SsiI	CCGC	4 cut(s)	62, 930, 972, 997
SspMI	CTAG	3 cut(s)	51, 933, 969
StyD4I	CCNGG	1 cut(s)	603
TaaI	ACNGT	4 cut(s)	97, 388, 990, 1175
TaqI	TCGA	1 cut(s)	359
TasI	AATT	3 cut(s)	270, 323, 1092
TatI	WGTACW	2 cut(s)	17, 375
TauI	GCSGC	1 cut(s)	1000
TfiI	GAWTC	3 cut(s)	168, 343, 634
Tru1I	TTAA	3 cut(s)	687, 1079, 1180
Tru9I	TTAA	3 cut(s)	687, 1079, 1180
TscAI	CASTG	7 cut(s)	107, 245, 336, 420, 850, 883, 1092
TseI	GCWGC	5 cut(s)	55, 421, 643, 994, 1006
TspDTI	ATGAA	4 cut(s)	220, 695, 1086, 1158
TspRI	CASTG	7 cut(s)	107, 245, 336, 420, 850, 883, 1092
XceI	RCATGY	2 cut(s)	1013, 1159
XcmI	CCANNNNNNNNNTGG	1 cut(s)	601
XmnI	GAANNNNTTC	1 cut(s)	1149
XspI	CTAG	3 cut(s)	51, 933, 969
ZrmI	AGTACT	2 cut(s)	19, 377
Zsp2I	ATGCAT	2 cut(s)	712, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.