Rroxscaffold_5G00370660

BAR domain of APPL family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
52358050 .. 52363562
5513 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00370660.1

Sequence Viewer

Length: 1482 bp
ATGGGTAGAGGAAGAAGTACTTCAAATTTGAAGTGTAGAATCACTAGGCTGCTTCTGCTCCTGCTTTTGCTATTCCTGTTCTGCTTAACTGTTCAGTGCCAAGAAACTGAGCCTCCATCGCCGTCAAAGCACCCTCACTCCAAGAGCAACGAGCTTGAAAGAATCATTCTTAGTCTTGTGTTGGGAGTATTGACCGGACTCATACTTGCTCTTATCTCTGCTTTCATTGTCCACTGCTTTGTTCGCTACATTAGCAAAACCCCAGTTCTCAAGGGCCCTGTAATTTTCTCCCCGAAAATCGCTCCGAAAACGCTCCAATTAGCACTGGCGAGTGAGAATCAGTTGCTTGGTTCGAGCCCAAATGGCAAGTACTACAGGACTGTGCTTGACAATGGGCTCATTATTGCAGTGAAGCAGCTGGAGCCCTTTTCGGAGTGTGGCTCACCTGAGGCTCAGAGCAAGTCTGCCAAGAGAAGGATACAGCAGGAGCTGGAAGTGCTTGCTGGCCTGAGACATAGGCATTTGATGAGTTTGAGGGCTTATGTTCGCGAGCACGATAGGTTCTCTTTGGTTTATGATTTTGTGCCCAATGGGAGCCTGGAGGATGCTATGAATAGAGTTAGGGAGAATCAGTTGCAGCTCAGTTGGGAGGTTCGGCTTCGGATTGCAGTTGGGGTGATTAAGGGGCTTCAGTATCTTCATGCATATGTGCCTCAGATTATGCATAACAACTTGAAGCCGAGAAATGTTATGTTGGATGCTGAGTTTGAACCGAGGTTGGGAGATTATGGGTTGGCTAAGCTCACTCCCCATTTGGACGGGGCATTATCTGGTTACACTGCTCCAGAGTGTTTCCAGAATGACAGGTACACTGATAAGAGCGACATTTTCAGCTTTGGGATGATATTGGGAGTTTTACTAACTGGTAGAGACCCAACTGATCCCTTCTTTGGGGAAACATCTACTGGAGGAAGTTTAGGACGGTGGCTGCGGCACTTGCAGCATGCAGGGGAGGCACGGGAAGCGTTAGATAAGAGCCTTATTGGGGAAGAAGGAGAGGAAGATGAAATGTTAATGGCGGTGAGAATTGCTGTCGTATGCTTATCAGATGTGCCAGCAGAAAGACCCTCAAGTGATGAACTTGTCCACTACTCCAAGGGCAAAATCTTCGAGATACCCCTGCTCAAGGCAACCAATAATGTGACCTCCGATCCTTCAACAGTTGATTACAGCTCCAATGCAACTTCGGTTTTTCCGGCAGAGGCTTGTGAGACTGTCGGAGGAGATGCTTGTGATGCCGAAATGTATCCTGAAGTGAAGCTTGAACCACAAGAGAAGATCACCGCAGCCAAAACTGGTAAAGAGCTGCAGGATAGAGATTATCTAGAGTATGACAGCCCCAAGACGGTCTTCCCTGCAGAGGCTTGTGATGATCTCGGAGGAGAGTTTTGCGAGCCGGAGTATCAGAAAGGAGTATACTAG

Protein Analysis

493

Amino Acids

54.84

Weight (kDa)

5.58

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 113 - 382 3.7e-30 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 116 - 313 2.2e-24 Protein tyrosine and serine/threonine kinase
Lir1 PF07207 393 - 485 7.5e-42 Light regulated protein Lir1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013526)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1476
AccII CGCG 1 cut(s) 549
AciI CCGC 3 cut(s) 991, 1079, 1344
AclWI GGATC 2 cut(s) 935, 1205
AcsI RAATTY 1 cut(s) 25
AcuI CTGAAG 2 cut(s) 674, 1332
AfaI GTAC 3 cut(s) 19, 371, 869
AfiI CCNNNNNNNGG 8 cut(s) 474, 779, 950, 951, 1045, 1186, 1405, 1420
AgsI TTSAA 7 cut(s) 24, 31, 158, 736, 770, 1218, 1325
AjnI CCWGG 1 cut(s) 597
AjuI GAANNNNNNNTTGG 2 cut(s) 1394, 1426
AluBI AGCT 9 cut(s) 154, 418, 490, 640, 802, 894, 1233, 1321, 1366
AluI AGCT 9 cut(s) 154, 418, 490, 640, 802, 894, 1233, 1321, 1366
Alw21I GWGCWC 1 cut(s) 555
Alw26I GTCTC 3 cut(s) 505, 924, 1265
AlwI GGATC 2 cut(s) 935, 1205
AlwNI CAGNNNCTG 1 cut(s) 490
AoxI GGCC 2 cut(s) 274, 505
ApaI GGGCCC 1 cut(s) 278
ApeKI GCWGC 7 cut(s) 49, 415, 637, 988, 1000, 1346, 1366
ApoI RAATTY 1 cut(s) 25
Asp700I GAANNNNTTC 1 cut(s) 19
AspS9I GGNCC 2 cut(s) 274, 275
AsuHPI GGTGA 4 cut(s) 435, 688, 1093, 1333
AxyI CCTNAGG 1 cut(s) 447
BaeGI GKGCMC 2 cut(s) 278, 588
BanII GRGCYC 4 cut(s) 278, 359, 399, 426
BbsI GAAGAC 1 cut(s) 1402
Bbv12I GWGCWC 1 cut(s) 555
BbvI GCAGC 7 cut(s) 36, 427, 649, 975, 1012, 1353, 1358
BccI CCATC 1 cut(s) 124
BceAI ACGGC 1 cut(s) 106
BcgI CGANNNNNNTGC 2 cut(s) 1150, 1184
BciT130I CCWGG 1 cut(s) 599
BciVI GTATCC 2 cut(s) 471, 1317
BcoDI GTCTC 3 cut(s) 505, 924, 1265
BfaI CTAG 3 cut(s) 45, 1385, 1480
BfmI CTRYAG 3 cut(s) 373, 1367, 1416
BfuI GTATCC 2 cut(s) 471, 1317
BglI GCCNNNNNGGC 1 cut(s) 363
BisI GCNGC 8 cut(s) 50, 416, 638, 989, 992, 1001, 1347, 1367
BlpI GCTNAGC 1 cut(s) 798
BlsI GCNGC 8 cut(s) 51, 417, 639, 990, 993, 1002, 1348, 1368
BmcAI AGTACT 2 cut(s) 19, 371
Bme1390I CCNGG 1 cut(s) 599
BmgT120I GGNCC 2 cut(s) 274, 275
BmiI GGNNCC 3 cut(s) 276, 423, 596
BmrFI CCNGG 1 cut(s) 599
BmrI ACTGGG 1 cut(s) 257
BmsI GCATC 4 cut(s) 595, 748, 1276, 1285
BmuI ACTGGG 1 cut(s) 257
BpiI GAAGAC 1 cut(s) 1402
BplI GAGNNNNNCTC 2 cut(s) 425, 457
BpmI CTGGAG 4 cut(s) 440, 620, 828, 987
Bpu1102I GCTNAGC 1 cut(s) 798
BpuEI CTTGAG 3 cut(s) 254, 1114, 1169
BsaI GGTCTC 1 cut(s) 924
BsaJI CCNNGG 2 cut(s) 773, 1155
BsaWI WCCGGW 1 cut(s) 194
BsaXI ACNNNNNCTCC 6 cut(s) 97, 122, 127, 152, 617, 647
Bsc4I CCNNNNNNNGG 8 cut(s) 474, 779, 950, 951, 1045, 1186, 1405, 1420
Bse1I ACTGG 5 cut(s) 263, 330, 928, 970, 1360
Bse21I CCTNAGG 1 cut(s) 447
BseBI CCWGG 1 cut(s) 599
BseDI CCNNGG 2 cut(s) 773, 1155
BseGI GGATG 3 cut(s) 610, 763, 906
BseLI CCNNNNNNNGG 8 cut(s) 474, 779, 950, 951, 1045, 1186, 1405, 1420
BseMII CTCAG 7 cut(s) 99, 438, 467, 500, 655, 728, 753
BseNI ACTGG 5 cut(s) 263, 330, 928, 970, 1360
BseRI GAGGAG 2 cut(s) 1296, 1455
BseSI GKGCMC 2 cut(s) 278, 588
BseXI GCAGC 7 cut(s) 36, 427, 649, 975, 1012, 1353, 1358
Bsh1236I CGCG 1 cut(s) 549
BshFI GGCC 2 cut(s) 276, 507
BsiHKAI GWGCWC 1 cut(s) 555
BsiSI CCGG 3 cut(s) 195, 1256, 1457
BslI CCNNNNNNNGG 8 cut(s) 474, 779, 950, 951, 1045, 1186, 1405, 1420
BsmAI GTCTC 3 cut(s) 505, 924, 1265
BsnI GGCC 2 cut(s) 276, 507
Bso31I GGTCTC 1 cut(s) 924
Bsp120I GGGCCC 1 cut(s) 274
Bsp1286I GDGCHC 6 cut(s) 278, 359, 399, 426, 555, 588
Bsp143I GATC 4 cut(s) 940, 1210, 1338, 1432
Bsp1720I GCTNAGC 1 cut(s) 798
Bsp68I TCGCGA 1 cut(s) 549
BspACI CCGC 3 cut(s) 991, 1079, 1344
BspANI GGCC 2 cut(s) 276, 507
BspCNI CTCAG 7 cut(s) 100, 439, 466, 501, 654, 727, 754
BspFNI CGCG 1 cut(s) 549
BspLI GGNNCC 3 cut(s) 276, 423, 596
BspMAI CTGCAG 2 cut(s) 1371, 1420
BspPI GGATC 2 cut(s) 935, 1205
BspTNI GGTCTC 1 cut(s) 924
BsrI ACTGG 5 cut(s) 263, 330, 928, 970, 1360
BssECI CCNNGG 2 cut(s) 773, 1155
BssMI GATC 4 cut(s) 940, 1210, 1338, 1432
BssNAI GTATAC 1 cut(s) 1477
BssT1I CCWWGG 1 cut(s) 1155
Bst1107I GTATAC 1 cut(s) 1477
Bst2UI CCWGG 1 cut(s) 599
Bst4CI ACNGT 6 cut(s) 91, 382, 984, 1222, 1276, 1408
BstC8I GCNNGC 6 cut(s) 501, 505, 551, 1005, 1116, 1454
BstDEI CTNAG 9 cut(s) 108, 170, 447, 453, 509, 641, 714, 762, 798
BstENI CCTNNNNNAGG 1 cut(s) 1184
BstF5I GGATG 3 cut(s) 610, 763, 906
BstFNI CGCG 1 cut(s) 549
BstKTI GATC 4 cut(s) 943, 1213, 1341, 1435
BstMAI GTCTC 3 cut(s) 505, 924, 1265
BstMBI GATC 4 cut(s) 940, 1210, 1338, 1432
BstNI CCWGG 1 cut(s) 599
BstNSI RCATGY 1 cut(s) 1007
BstSCI CCNGG 1 cut(s) 597
BstSFI CTRYAG 3 cut(s) 373, 1367, 1416
BstSLI GKGCMC 2 cut(s) 278, 588
BstUI CGCG 1 cut(s) 549
BstV1I GCAGC 7 cut(s) 36, 427, 649, 975, 1012, 1353, 1358
BstV2I GAAGAC 1 cut(s) 1402
BstZ17I GTATAC 1 cut(s) 1477
Bsu36I CCTNAGG 1 cut(s) 447
BsuI GTATCC 2 cut(s) 471, 1317
BsuRI GGCC 2 cut(s) 276, 507
BtgZI GCGATG 1 cut(s) 102
BtsCI GGATG 3 cut(s) 610, 763, 906
BtsI GCAGTG 3 cut(s) 232, 414, 837
BtsIMutI CAGTG 6 cut(s) 101, 232, 323, 414, 837, 870
BtuMI TCGCGA 1 cut(s) 549
Cac8I GCNNGC 6 cut(s) 501, 505, 551, 1005, 1116, 1454
CaiI CAGNNNCTG 1 cut(s) 490
Cfr13I GGNCC 2 cut(s) 274, 275
Csp6I GTAC 3 cut(s) 18, 370, 868
CviAII CATG 2 cut(s) 701, 1004
CviQI GTAC 3 cut(s) 18, 370, 868
DdeI CTNAG 9 cut(s) 108, 170, 447, 453, 509, 641, 714, 762, 798
DpnI GATC 4 cut(s) 942, 1212, 1340, 1434
DpnII GATC 4 cut(s) 940, 1210, 1338, 1432
Eco130I CCWWGG 1 cut(s) 1155
Eco24I GRGCYC 4 cut(s) 278, 359, 399, 426
Eco31I GGTCTC 1 cut(s) 924
Eco57I CTGAAG 2 cut(s) 674, 1332
Eco81I CCTNAGG 1 cut(s) 447
EcoNI CCTNNNNNAGG 1 cut(s) 1184
EcoO109I RGGNCCY 2 cut(s) 274, 275
EcoRII CCWGG 1 cut(s) 597
EcoT14I CCWWGG 1 cut(s) 1155
EcoT22I ATGCAT 2 cut(s) 706, 726
EcoT38I GRGCYC 4 cut(s) 278, 359, 399, 426
ErhI CCWWGG 1 cut(s) 1155
FaeI CATG 2 cut(s) 704, 1007
FalI AAGNNNNNCTT 5 cut(s) 36, 1305, 1337, 1394, 1426
FatI CATG 2 cut(s) 700, 1003
FauNDI CATATG 1 cut(s) 706
FblI GTMKAC 1 cut(s) 1476
Fnu4HI GCNGC 8 cut(s) 50, 416, 638, 989, 992, 1001, 1347, 1367
FokI GGATG 3 cut(s) 617, 770, 913
FriOI GRGCYC 4 cut(s) 278, 359, 399, 426
Fsp4HI GCNGC 8 cut(s) 50, 416, 638, 989, 992, 1001, 1347, 1367
FspBI CTAG 3 cut(s) 45, 1385, 1480
GluI GCNGC 8 cut(s) 50, 416, 638, 989, 992, 1001, 1347, 1367
GsuI CTGGAG 4 cut(s) 440, 620, 828, 987
HaeIII GGCC 2 cut(s) 276, 507
HapII CCGG 3 cut(s) 195, 1256, 1457
Hin1II CATG 2 cut(s) 704, 1007
HindIII AAGCTT 1 cut(s) 1319
HinfI GANTC 5 cut(s) 39, 162, 198, 337, 628
HpaII CCGG 3 cut(s) 195, 1256, 1457
HphI GGTGA 4 cut(s) 435, 688, 1093, 1333
Hpy166II GTNNAC 4 cut(s) 232, 870, 1147, 1477
Hpy188III TCNNGA 6 cut(s) 548, 845, 856, 1171, 1310, 1385
Hpy8I GTNNAC 4 cut(s) 232, 870, 1147, 1477
HpyAV CCTTC 4 cut(s) 468, 955, 1046, 1224
HpyCH4III ACNGT 6 cut(s) 91, 382, 984, 1222, 1276, 1408
HpyF3I CTNAG 9 cut(s) 108, 170, 447, 453, 509, 641, 714, 762, 798
Hsp92II CATG 2 cut(s) 704, 1007
Kzo9I GATC 4 cut(s) 940, 1210, 1338, 1432
LmnI GCTCC 8 cut(s) 63, 307, 318, 421, 487, 594, 847, 1238
Lsp1109I GCAGC 7 cut(s) 36, 427, 649, 975, 1012, 1353, 1358
LweI GCATC 4 cut(s) 595, 748, 1276, 1285
MaeI CTAG 3 cut(s) 45, 1385, 1480
MaeIII GTNAC 2 cut(s) 833, 1201
MalI GATC 4 cut(s) 942, 1212, 1340, 1434
MboI GATC 4 cut(s) 940, 1210, 1338, 1432
MboII GAAGA 7 cut(s) 24, 689, 1061, 1073, 1159, 1348, 1402
MhlI GDGCHC 6 cut(s) 278, 359, 399, 426, 555, 588
MluCI AATT 4 cut(s) 25, 282, 317, 1086
MlyI GAGTC 1 cut(s) 192
MmeI TCCRAC 2 cut(s) 735, 1258
Mph1103I ATGCAT 2 cut(s) 706, 726
MroXI GAANNNNTTC 1 cut(s) 19
MseI TTAA 3 cut(s) 86, 681, 1073
MslI CAYNNNNRTG 1 cut(s) 705
MspA1I CMGCKG 1 cut(s) 418
MspI CCGG 3 cut(s) 195, 1256, 1457
MspR9I CCNGG 1 cut(s) 599
MvaI CCWGG 1 cut(s) 599
MvnI CGCG 1 cut(s) 549
NdeI CATATG 1 cut(s) 706
NdeII GATC 4 cut(s) 940, 1210, 1338, 1432
NlaIII CATG 2 cut(s) 704, 1007
NlaIV GGNNCC 3 cut(s) 276, 423, 596
NmeAIII GCCGAG 1 cut(s) 765
NmuCI GTSAC 1 cut(s) 1201
NruI TCGCGA 1 cut(s) 549
NsiI ATGCAT 2 cut(s) 706, 726
NspI RCATGY 1 cut(s) 1007
PaeI GCATGC 1 cut(s) 1007
PdmI GAANNNNTTC 1 cut(s) 19
PfeI GAWTC 4 cut(s) 39, 162, 337, 628
PkrI GCNGC 8 cut(s) 51, 417, 639, 990, 993, 1002, 1348, 1368
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 597
PspGI CCWGG 1 cut(s) 597
PspN4I GGNNCC 3 cut(s) 276, 423, 596
PspOMI GGGCCC 1 cut(s) 274
PspPI GGNCC 2 cut(s) 274, 275
PstI CTGCAG 2 cut(s) 1371, 1420
PstNI CAGNNNCTG 1 cut(s) 490
PvuII CAGCTG 1 cut(s) 418
RruI TCGCGA 1 cut(s) 549
RsaI GTAC 3 cut(s) 19, 371, 869
RsaNI GTAC 3 cut(s) 18, 370, 868
RseI CAYNNNNRTG 1 cut(s) 705
SaqAI TTAA 3 cut(s) 86, 681, 1073
SatI GCNGC 8 cut(s) 50, 416, 638, 989, 992, 1001, 1347, 1367
Sau3AI GATC 4 cut(s) 940, 1210, 1338, 1432
Sau96I GGNCC 2 cut(s) 274, 275
ScaI AGTACT 2 cut(s) 19, 371
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 1 cut(s) 599
SduI GDGCHC 6 cut(s) 278, 359, 399, 426, 555, 588
SfaNI GCATC 4 cut(s) 595, 748, 1276, 1285
SfcI CTRYAG 3 cut(s) 373, 1367, 1416
SmiMI CAYNNNNRTG 1 cut(s) 705
SmlI CTYRAG 3 cut(s) 269, 1129, 1184
SmoI CTYRAG 3 cut(s) 269, 1129, 1184
SphI GCATGC 1 cut(s) 1007
Sse9I AATT 4 cut(s) 25, 282, 317, 1086
SsiI CCGC 3 cut(s) 991, 1079, 1344
SspMI CTAG 3 cut(s) 45, 1385, 1480
StyD4I CCNGG 1 cut(s) 597
StyI CCWWGG 1 cut(s) 1155
TaaI ACNGT 6 cut(s) 91, 382, 984, 1222, 1276, 1408
TaqI TCGA 2 cut(s) 353, 1170
TasI AATT 4 cut(s) 25, 282, 317, 1086
TatI WGTACW 2 cut(s) 17, 369
TauI GCSGC 1 cut(s) 994
TfiI GAWTC 4 cut(s) 39, 162, 337, 628
Tru1I TTAA 3 cut(s) 86, 681, 1073
Tru9I TTAA 3 cut(s) 86, 681, 1073
TscAI CASTG 6 cut(s) 101, 239, 330, 414, 844, 877
TseFI GTSAC 1 cut(s) 1201
TseI GCWGC 7 cut(s) 49, 415, 637, 988, 1000, 1346, 1366
Tsp45I GTSAC 1 cut(s) 1201
TspDTI ATGAA 5 cut(s) 214, 626, 689, 1080, 1152
TspRI CASTG 6 cut(s) 101, 239, 330, 414, 844, 877
XagI CCTNNNNNAGG 1 cut(s) 1184
XapI RAATTY 1 cut(s) 25
XbaI TCTAGA 1 cut(s) 1384
XceI RCATGY 1 cut(s) 1007
XcmI CCANNNNNNNNNTGG 1 cut(s) 595
XmiI GTMKAC 1 cut(s) 1476
XmnI GAANNNNTTC 1 cut(s) 19
XspI CTAG 3 cut(s) 45, 1385, 1480
ZrmI AGTACT 2 cut(s) 19, 371
Zsp2I ATGCAT 2 cut(s) 706, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.