Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0013526

Physical Location & Seq

Genomic Coordinates Forward (+)

46587814 .. 46589700

Gene Structure 1887 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG294100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGGTAGAGGAACAAGTACTTCAAATTTGAAGTGTAGAATCACTAGGCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTTTGCTATTCCTATTCTGCTCAACTGTTCAGTGCCTAGAAACTGAGCCTCCATCGCCGTCAAAGCACCCTCACTCCAAGAACAACGAGCTTGAAAGAATCATTCTTAGTCTTGTGTTGGGAGTATTGACCGGACTCATACTTGCTCTTATCTCTGCTTTCATTGTCCACTGCTTTGTTCGCTACATTAGCAGAACCCCAATTCTCAAGGGCCCTGTAATTTTCTCCCCGAAAATCGCTCCGAAAACGCTCCAATTAGCACTGGCGAGTGAGAATCAGTTGCTTGGTTCGAGCCCAAATGGCAGGTACTACAGGACTGTGCTTGACAATGGGCTCATTATTGCAGTGAAGCAGCTGGAGCCCTTTTCGGAGTGTGGCTCACCCGAGGCTCAGAGCAAGTCTGCCAAGAGAAGGATACAGCAGGAGCTGGAAGTGCTTGCTGGCCTGAGACATAGGCATTTGATGAGTTTGAGGGCTTATGTTCGCGAGCACGATAGGTTCTCTTTGGTTTATGATTTTGTGCCCAATGGGAGCCTGGAGGATGCTATGAATAGAGTTAGGGAGAATCAGTTGCAGCTCAGTTGGGAGGTTCGGCTTCGGATTGCAGTTGGGGTGATTAAGGGGCTTCAGTATCTTCATGCATATGTGCCTCAGATTATGCATAACAACTTGAAGCCGAGAAATGTTATGTTGGATGCTGAGTTTGAACCGAGGTTGGGAGATTATGGGTTGGCTAAGCTCACTCCCCATTTGGATGGGGCATTATCTGGTTACACTGCTCCAGAGTGTTTCCAGAATGACAGGTACACTGATAAGAGCGACATTTTCAGCTTTGGGATGATATTGGGAGTTTTACTAACTGGTAGAGACCCAACTGATCCCTTCTTTGGGGAAACATCTAGCGGAGGAAGTTTAGGACGGTGGCTGCGGCACTTGCAGCATGCAGGGGAGGCACGGGAAGCGTTAGATAAGAGCCTTATTGGGGAAGAAGGAGAGGAAGATGAAATGTTAATGGCGGTGAGAATTGCTGTCGTATGCTTATCAGATGTGCCAGCAGAAAGACCCTCAAGTGATGAACTTGTTCACATGCTAACCCAACTGCACAGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005798 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0007275 GO:0007389 GO:0008047 GO:0008150 GO:0008289 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009965 GO:0010016 GO:0010033 GO:0010051 GO:0010087 GO:0012505 GO:0016020 GO:0016192 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030234 GO:0030695 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0035091 GO:0042221 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050790 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0097708 GO:0098657 GO:0098772 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 Ank_5 ArfGap BAR_3 PH Pkinase

Protein Analysis

395

Amino Acids

44.19

Weight (kDa)

6.9

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	117 - 386	3.9e-30	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	121 - 317	1.4e-24	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13290 AT5G13290 AT5G13290
fragaria_vesca	FvH4_4g22780
malus_domestica	MD13G1129700.v1.1 MD16G1130000.v1.1
prunus_persica	Prupe.1G216600_v2.0.a1 Prupe.1G216600_v2.0.a1
pyrus_communis	pycom16g11060
rosa_chinensis	RchiOBHm_Chr4g0429001
rosa_laevigata	RLG00000007105
rosa_multiflora	Rmu_sc0008629.1_g000015 Rmu_sc0008629.1_g000016
rosa_roxburghii	Rroxscaffold_5G00370660
rosa_rugosa	Rorug04G0231900
rosa_samantha	Rh4BG294100 Rh4CG309600 Rh4DG291000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	369
AccII	CGCG	1 cut(s)	561
AciI	CCGC	3 cut(s)	978, 1003, 1091
AclWI	GGATC	1 cut(s)	947
AcsI	RAATTY	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	686
AfaI	GTAC	3 cut(s)	19, 383, 881
AfiI	CCNNNNNNNGG	5 cut(s)	486, 791, 962, 963, 1057
AgsI	TTSAA	5 cut(s)	24, 31, 170, 748, 782
AjnI	CCWGG	1 cut(s)	609
AluBI	AGCT	6 cut(s)	166, 430, 502, 652, 814, 906
AluI	AGCT	6 cut(s)	166, 430, 502, 652, 814, 906
Alw21I	GWGCWC	1 cut(s)	567
Alw26I	GTCTC	2 cut(s)	517, 936
AlwI	GGATC	1 cut(s)	947
AlwNI	CAGNNNCTG	1 cut(s)	502
Ama87I	CYCGRG	1 cut(s)	458
AoxI	GGCC	2 cut(s)	286, 517
ApaI	GGGCCC	1 cut(s)	290
ApeKI	GCWGC	5 cut(s)	49, 427, 649, 1000, 1012
ApoI	RAATTY	1 cut(s)	25
Asp700I	GAANNNNTTC	1 cut(s)	1155
AspS9I	GGNCC	2 cut(s)	286, 287
AsuHPI	GGTGA	3 cut(s)	447, 700, 1105
AvaI	CYCGRG	1 cut(s)	458
BaeGI	GKGCMC	2 cut(s)	290, 600
BanII	GRGCYC	4 cut(s)	290, 371, 411, 438
Bbv12I	GWGCWC	1 cut(s)	567
BbvI	GCAGC	5 cut(s)	36, 439, 661, 987, 1024
BccI	CCATC	2 cut(s)	136, 824
BceAI	ACGGC	1 cut(s)	118
BciT130I	CCWGG	1 cut(s)	611
BciVI	GTATCC	1 cut(s)	483
BcoDI	GTCTC	2 cut(s)	517, 936
BfaI	CTAG	3 cut(s)	45, 113, 975
BfmI	CTRYAG	1 cut(s)	385
BfuAI	ACCTGC	1 cut(s)	369
BfuI	GTATCC	1 cut(s)	483
BglI	GCCNNNNNGGC	1 cut(s)	375
BisI	GCNGC	6 cut(s)	50, 428, 650, 1001, 1004, 1013
BlpI	GCTNAGC	1 cut(s)	810
BlsI	GCNGC	6 cut(s)	51, 429, 651, 1002, 1005, 1014
BmcAI	AGTACT	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	611
BmeT110I	CYCGRG	1 cut(s)	458
BmgT120I	GGNCC	2 cut(s)	286, 287
BmiI	GGNNCC	3 cut(s)	288, 435, 608
BmrFI	CCNGG	1 cut(s)	611
BmsI	GCATC	2 cut(s)	607, 760
BplI	GAGNNNNNCTC	2 cut(s)	437, 469
BpmI	CTGGAG	3 cut(s)	452, 632, 840
Bpu1102I	GCTNAGC	1 cut(s)	810
BpuEI	CTTGAG	2 cut(s)	266, 1126
BsaI	GGTCTC	1 cut(s)	936
BsaJI	CCNNGG	2 cut(s)	459, 785
BsaWI	WCCGGW	1 cut(s)	206
BsaXI	ACNNNNNCTCC	6 cut(s)	109, 134, 139, 164, 629, 659
Bsc4I	CCNNNNNNNGG	5 cut(s)	486, 791, 962, 963, 1057
Bse1I	ACTGG	2 cut(s)	342, 940
BseBI	CCWGG	1 cut(s)	611
BseDI	CCNNGG	2 cut(s)	459, 785
BseGI	GGATG	4 cut(s)	622, 775, 835, 918
BseLI	CCNNNNNNNGG	5 cut(s)	486, 791, 962, 963, 1057
BseMII	CTCAG	6 cut(s)	111, 479, 512, 667, 740, 765
BseNI	ACTGG	2 cut(s)	342, 940
BseSI	GKGCMC	2 cut(s)	290, 600
BseXI	GCAGC	5 cut(s)	36, 439, 661, 987, 1024
BsgI	GTGCAG	1 cut(s)	1160
Bsh1236I	CGCG	1 cut(s)	561
BshFI	GGCC	2 cut(s)	288, 519
BsiHKAI	GWGCWC	1 cut(s)	567
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	1 cut(s)	207
BslI	CCNNNNNNNGG	5 cut(s)	486, 791, 962, 963, 1057
BsmAI	GTCTC	2 cut(s)	517, 936
BsnI	GGCC	2 cut(s)	288, 519
Bso31I	GGTCTC	1 cut(s)	936
BsoBI	CYCGRG	1 cut(s)	458
Bsp120I	GGGCCC	1 cut(s)	286
Bsp1286I	GDGCHC	6 cut(s)	290, 371, 411, 438, 567, 600
Bsp143I	GATC	1 cut(s)	952
Bsp1720I	GCTNAGC	1 cut(s)	810
Bsp68I	TCGCGA	1 cut(s)	561
BspACI	CCGC	3 cut(s)	978, 1003, 1091
BspANI	GGCC	2 cut(s)	288, 519
BspCNI	CTCAG	6 cut(s)	112, 478, 513, 666, 739, 766
BspFNI	CGCG	1 cut(s)	561
BspLI	GGNNCC	3 cut(s)	288, 435, 608
BspMI	ACCTGC	1 cut(s)	369
BspPI	GGATC	1 cut(s)	947
BspTNI	GGTCTC	1 cut(s)	936
BsrI	ACTGG	2 cut(s)	342, 940
BssECI	CCNNGG	2 cut(s)	459, 785
BssMI	GATC	1 cut(s)	952
Bst2UI	CCWGG	1 cut(s)	611
Bst4CI	ACNGT	4 cut(s)	103, 394, 996, 1181
BstC8I	GCNNGC	5 cut(s)	513, 517, 563, 1017, 1128
BstDEI	CTNAG	8 cut(s)	120, 182, 465, 521, 653, 726, 774, 810
BstF5I	GGATG	4 cut(s)	622, 775, 835, 918
BstFNI	CGCG	1 cut(s)	561
BstKTI	GATC	1 cut(s)	955
BstMAI	GTCTC	2 cut(s)	517, 936
BstMBI	GATC	1 cut(s)	952
BstNI	CCWGG	1 cut(s)	611
BstNSI	RCATGY	2 cut(s)	1019, 1165
BstSCI	CCNGG	1 cut(s)	609
BstSFI	CTRYAG	1 cut(s)	385
BstSLI	GKGCMC	2 cut(s)	290, 600
BstUI	CGCG	1 cut(s)	561
BstV1I	GCAGC	5 cut(s)	36, 439, 661, 987, 1024
BstXI	CCANNNNNNTGG	1 cut(s)	830
BsuI	GTATCC	1 cut(s)	483
BsuRI	GGCC	2 cut(s)	288, 519
BtgZI	GCGATG	1 cut(s)	114
BtsCI	GGATG	4 cut(s)	622, 775, 835, 918
BtsI	GCAGTG	3 cut(s)	244, 426, 849
BtsIMutI	CAGTG	6 cut(s)	113, 244, 335, 426, 849, 882
BtuMI	TCGCGA	1 cut(s)	561
BveI	ACCTGC	1 cut(s)	369
Cac8I	GCNNGC	5 cut(s)	513, 517, 563, 1017, 1128
CaiI	CAGNNNCTG	1 cut(s)	502
Cfr13I	GGNCC	2 cut(s)	286, 287
Csp6I	GTAC	3 cut(s)	18, 382, 880
CviAII	CATG	3 cut(s)	713, 1016, 1162
CviQI	GTAC	3 cut(s)	18, 382, 880
DdeI	CTNAG	8 cut(s)	120, 182, 465, 521, 653, 726, 774, 810
DpnI	GATC	1 cut(s)	954
DpnII	GATC	1 cut(s)	952
Eco24I	GRGCYC	4 cut(s)	290, 371, 411, 438
Eco31I	GGTCTC	1 cut(s)	936
Eco57I	CTGAAG	1 cut(s)	686
Eco88I	CYCGRG	1 cut(s)	458
EcoO109I	RGGNCCY	2 cut(s)	286, 287
EcoRII	CCWGG	1 cut(s)	609
EcoT22I	ATGCAT	2 cut(s)	718, 738
EcoT38I	GRGCYC	4 cut(s)	290, 371, 411, 438
FaeI	CATG	3 cut(s)	716, 1019, 1165
FatI	CATG	3 cut(s)	712, 1015, 1161
FauNDI	CATATG	1 cut(s)	718
Fnu4HI	GCNGC	6 cut(s)	50, 428, 650, 1001, 1004, 1013
FokI	GGATG	4 cut(s)	629, 782, 842, 925
FriOI	GRGCYC	4 cut(s)	290, 371, 411, 438
Fsp4HI	GCNGC	6 cut(s)	50, 428, 650, 1001, 1004, 1013
FspBI	CTAG	3 cut(s)	45, 113, 975
GluI	GCNGC	6 cut(s)	50, 428, 650, 1001, 1004, 1013
GsuI	CTGGAG	3 cut(s)	452, 632, 840
HaeIII	GGCC	2 cut(s)	288, 519
HapII	CCGG	1 cut(s)	207
Hin1II	CATG	3 cut(s)	716, 1019, 1165
HinfI	GANTC	5 cut(s)	39, 174, 210, 349, 640
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	3 cut(s)	447, 700, 1105
Hpy166II	GTNNAC	3 cut(s)	244, 882, 1159
Hpy188I	TCNGA	6 cut(s)	318, 445, 468, 675, 729, 1120
Hpy188III	TCNNGA	3 cut(s)	560, 857, 868
Hpy8I	GTNNAC	3 cut(s)	244, 882, 1159
HpyAV	CCTTC	3 cut(s)	480, 967, 1058
HpyCH4III	ACNGT	4 cut(s)	103, 394, 996, 1181
HpyCH4V	TGCA	8 cut(s)	419, 649, 680, 716, 736, 1012, 1019, 1177
HpyF3I	CTNAG	8 cut(s)	120, 182, 465, 521, 653, 726, 774, 810
Hsp92II	CATG	3 cut(s)	716, 1019, 1165
Kzo9I	GATC	1 cut(s)	952
LmnI	GCTCC	6 cut(s)	319, 330, 433, 499, 606, 859
Lsp1109I	GCAGC	5 cut(s)	36, 439, 661, 987, 1024
LweI	GCATC	2 cut(s)	607, 760
MaeI	CTAG	3 cut(s)	45, 113, 975
MaeIII	GTNAC	1 cut(s)	845
MalI	GATC	1 cut(s)	954
MboI	GATC	1 cut(s)	952
MboII	GAAGA	3 cut(s)	701, 1073, 1085
MhlI	GDGCHC	6 cut(s)	290, 371, 411, 438, 567, 600
MluCI	AATT	5 cut(s)	25, 276, 294, 329, 1098
MlyI	GAGTC	1 cut(s)	204
MmeI	TCCRAC	1 cut(s)	747
Mph1103I	ATGCAT	2 cut(s)	718, 738
MroXI	GAANNNNTTC	1 cut(s)	1155
MseI	TTAA	3 cut(s)	693, 1085, 1186
MslI	CAYNNNNRTG	2 cut(s)	717, 828
MspA1I	CMGCKG	1 cut(s)	430
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	611
MvaI	CCWGG	1 cut(s)	611
MvnI	CGCG	1 cut(s)	561
NdeI	CATATG	1 cut(s)	718
NdeII	GATC	1 cut(s)	952
NlaIII	CATG	3 cut(s)	716, 1019, 1165
NlaIV	GGNNCC	3 cut(s)	288, 435, 608
NmeAIII	GCCGAG	1 cut(s)	777
NruI	TCGCGA	1 cut(s)	561
NsiI	ATGCAT	2 cut(s)	718, 738
NspI	RCATGY	2 cut(s)	1019, 1165
PaeI	GCATGC	1 cut(s)	1019
PdmI	GAANNNNTTC	1 cut(s)	1155
PfeI	GAWTC	4 cut(s)	39, 174, 349, 640
PkrI	GCNGC	6 cut(s)	51, 429, 651, 1002, 1005, 1014
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	609
PspGI	CCWGG	1 cut(s)	609
PspN4I	GGNNCC	3 cut(s)	288, 435, 608
PspOMI	GGGCCC	1 cut(s)	286
PspPI	GGNCC	2 cut(s)	286, 287
PstNI	CAGNNNCTG	1 cut(s)	502
PvuII	CAGCTG	1 cut(s)	430
RruI	TCGCGA	1 cut(s)	561
RsaI	GTAC	3 cut(s)	19, 383, 881
RsaNI	GTAC	3 cut(s)	18, 382, 880
RseI	CAYNNNNRTG	2 cut(s)	717, 828
SaqAI	TTAA	3 cut(s)	693, 1085, 1186
SatI	GCNGC	6 cut(s)	50, 428, 650, 1001, 1004, 1013
Sau3AI	GATC	1 cut(s)	952
Sau96I	GGNCC	2 cut(s)	286, 287
ScaI	AGTACT	1 cut(s)	19
SchI	GAGTC	1 cut(s)	204
ScrFI	CCNGG	1 cut(s)	611
SduI	GDGCHC	6 cut(s)	290, 371, 411, 438, 567, 600
SfaNI	GCATC	2 cut(s)	607, 760
SfcI	CTRYAG	1 cut(s)	385
SmiMI	CAYNNNNRTG	2 cut(s)	717, 828
SmlI	CTYRAG	2 cut(s)	281, 1141
SmoI	CTYRAG	2 cut(s)	281, 1141
SphI	GCATGC	1 cut(s)	1019
Sse9I	AATT	5 cut(s)	25, 276, 294, 329, 1098
SsiI	CCGC	3 cut(s)	978, 1003, 1091
SspMI	CTAG	3 cut(s)	45, 113, 975
StyD4I	CCNGG	1 cut(s)	609
TaaI	ACNGT	4 cut(s)	103, 394, 996, 1181
TaqI	TCGA	1 cut(s)	365
TasI	AATT	5 cut(s)	25, 276, 294, 329, 1098
TatI	WGTACW	1 cut(s)	17
TauI	GCSGC	1 cut(s)	1006
TfiI	GAWTC	4 cut(s)	39, 174, 349, 640
Tru1I	TTAA	3 cut(s)	693, 1085, 1186
Tru9I	TTAA	3 cut(s)	693, 1085, 1186
TscAI	CASTG	6 cut(s)	113, 251, 342, 426, 856, 889
TseI	GCWGC	5 cut(s)	49, 427, 649, 1000, 1012
TspDTI	ATGAA	5 cut(s)	226, 638, 701, 1092, 1164
TspRI	CASTG	6 cut(s)	113, 251, 342, 426, 856, 889
XapI	RAATTY	1 cut(s)	25
XceI	RCATGY	2 cut(s)	1019, 1165
XcmI	CCANNNNNNNNNTGG	1 cut(s)	607
XmnI	GAANNNNTTC	1 cut(s)	1155
XspI	CTAG	3 cut(s)	45, 113, 975
ZrmI	AGTACT	1 cut(s)	19
Zsp2I	ATGCAT	2 cut(s)	718, 738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.