Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013847

Physical Location & Seq

Genomic Coordinates Forward (+)

4271730 .. 4274674

Gene Structure 2945 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G13330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGTCTCCGCTCTCAGCCGTGTCATAGAGAATCCGACAGACCCGCCGGTCAAACAAGAGCTTGATAAATCGGATCAACATCAACCAGACCAAGATCAACCAAGAAGAAGACACTATAGAGGCGTAAGGCAGAGACCATGGGGTAAATGGGCGGCAGAAATCCGCGATCCAAAGAAAGCAGCCCGTGTCTGGCTCGGGACTTTCGAGACGGCAGAGGAAGCTGCTTTAGCCTATGACCGAGCTGCCCTCAAATTCAAAGGCACCAAGGCTAAACTGAACTTCCCTGAACGGGTCCAAGGCCCTACTACCACCACAACCATTTCTCATGCACCAAGAGGAGTTAGTGAATCCATGAACTCACCTCCTCCTCGACCTGGTCCACCTTCAACTACTACTACTTCGTGGCCAATGACTTATAACCAGGACATACTTCAATACGCTCAGTTGCTTACGAGTAACAATGAGGTTGATTTATCATACTACACGTCGACTCTCTTCAGTCAACCTTTTTCAACGCCTTCTTCATCTTCTTCTTCCTCCCAACAGACGCAGCAACAGCAGCTACAACAACAACAACAGCAGCGTGAAGAAGAAGAGAAGAATTATGGTTACAATTATTATAACTACCCAAGAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071497 GO:0071704 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

212

Amino Acids

24.29

Weight (kDa)

8.71

Isoelectric Point (pI)

63.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	38 - 87	3.5e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13330
fragaria_vesca	FvH4_4g22650
malus_domestica	MD13G1130700.v1.1 MD16G1140800.v1.1
prunus_persica	Prupe.1G214900_v2.0.a1
pyrus_communis	pycom13g11410 pycom16g11140
rosa_chinensis	RchiOBHm_Chr4g0428891
rosa_laevigata	RLG00000007117
rosa_multiflora	Rmu_sc0008612.1_g000008
rosa_roxburghii	Rroxscaffold_5G00370560
rosa_rugosa	Rorug04G0230000
rosa_samantha	Rh4AG286700 Rh4BG292500 Rh4CG308500 Rh4DG289700
rosa_wichuraiana	Rw4G024860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	417, 621
AasI	GACNNNNNNGTC	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	260
AccBSI	CCGCTC	1 cut(s)	11
AccI	GTMKAC	1 cut(s)	488
AccII	CGCG	1 cut(s)	165
AciI	CCGC	4 cut(s)	9, 44, 152, 163
AclWI	GGATC	2 cut(s)	81, 161
AcoI	YGGCCR	1 cut(s)	404
AcsI	RAATTY	1 cut(s)	251
AcuI	CTGAAG	1 cut(s)	481
AfiI	CCNNNNNNNGG	3 cut(s)	189, 289, 374
AflIII	ACRYGT	1 cut(s)	483
AgsI	TTSAA	4 cut(s)	256, 387, 434, 513
AjiI	CACGTC	1 cut(s)	486
AjnI	CCWGG	2 cut(s)	373, 420
AluBI	AGCT	4 cut(s)	61, 221, 242, 562
AluI	AGCT	4 cut(s)	61, 221, 242, 562
Alw26I	GTCTC	3 cut(s)	10, 127, 200
AlwI	GGATC	2 cut(s)	81, 161
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	2 cut(s)	298, 404
ApeKI	GCWGC	6 cut(s)	179, 221, 242, 550, 559, 580
ApoI	RAATTY	1 cut(s)	251
AspS9I	GGNCC	3 cut(s)	292, 299, 377
AsuHPI	GGTGA	1 cut(s)	351
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	2 cut(s)	292, 377
BalI	TGGCCA	1 cut(s)	406
BanI	GGYRCC	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	115
BbvI	GCAGC	6 cut(s)	191, 208, 229, 562, 571, 592
BceAI	ACGGC	2 cut(s)	3, 225
BciT130I	CCWGG	2 cut(s)	375, 422
BcoDI	GTCTC	3 cut(s)	10, 127, 200
BfmI	CTRYAG	1 cut(s)	115
BisI	GCNGC	7 cut(s)	153, 180, 222, 243, 551, 560, 581
BlsI	GCNGC	7 cut(s)	154, 181, 223, 244, 552, 561, 582
Bme1390I	CCNGG	2 cut(s)	375, 422
Bme18I	GGWCC	2 cut(s)	292, 377
BmeT110I	CYCGRG	1 cut(s)	194
BmgBI	CACGTC	1 cut(s)	486
BmgT120I	GGNCC	3 cut(s)	292, 299, 377
BmiI	GGNNCC	2 cut(s)	262, 293
BmrFI	CCNGG	2 cut(s)	375, 422
BpiI	GAAGAC	1 cut(s)	115
BplI	GAGNNNNNCTC	2 cut(s)	231, 263
BsaBI	GATNNNNATC	1 cut(s)	78
BsaI	GGTCTC	2 cut(s)	10, 127
BsaJI	CCNNGG	3 cut(s)	137, 264, 295
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 289, 374
Bse118I	RCCGGY	1 cut(s)	46
Bse8I	GATNNNNATC	1 cut(s)	78
BseBI	CCWGG	2 cut(s)	375, 422
BseDI	CCNNGG	3 cut(s)	137, 264, 295
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	3 cut(s)	189, 289, 374
BseMII	CTCAG	2 cut(s)	28, 455
BseRI	GAGGAG	3 cut(s)	351, 354, 357
BseXI	GCAGC	6 cut(s)	191, 208, 229, 562, 571, 592
Bsh1236I	CGCG	1 cut(s)	165
BshFI	GGCC	2 cut(s)	300, 406
BshNI	GGYRCC	1 cut(s)	260
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	3 cut(s)	189, 289, 374
BsmAI	GTCTC	3 cut(s)	10, 127, 200
BsmBI	CGTCTC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	2 cut(s)	300, 406
Bso31I	GGTCTC	2 cut(s)	10, 127
BsoBI	CYCGRG	1 cut(s)	194
Bsp143I	GATC	3 cut(s)	73, 94, 166
Bsp19I	CCATGG	1 cut(s)	137
BspACI	CCGC	4 cut(s)	9, 44, 152, 163
BspANI	GGCC	2 cut(s)	300, 406
BspCNI	CTCAG	2 cut(s)	27, 454
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	2 cut(s)	262, 293
BspPI	GGATC	2 cut(s)	81, 161
BspT107I	GGYRCC	1 cut(s)	260
BspTNI	GGTCTC	2 cut(s)	10, 127
BsrBI	CCGCTC	1 cut(s)	11
BsrFI	RCCGGY	1 cut(s)	46
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	3 cut(s)	137, 264, 295
BssMI	GATC	3 cut(s)	73, 94, 166
BssT1I	CCWWGG	3 cut(s)	137, 264, 295
Bst2UI	CCWGG	2 cut(s)	375, 422
Bst6I	CTCTTC	2 cut(s)	500, 588
BstDEI	CTNAG	2 cut(s)	14, 441
BstDSI	CCRYGG	1 cut(s)	137
BstFNI	CGCG	1 cut(s)	165
BstKTI	GATC	3 cut(s)	76, 97, 169
BstMAI	GTCTC	3 cut(s)	10, 127, 200
BstMBI	GATC	3 cut(s)	73, 94, 166
BstMWI	GCNNNNNNNGC	4 cut(s)	218, 227, 556, 559
BstNI	CCWGG	2 cut(s)	375, 422
BstSCI	CCNGG	2 cut(s)	373, 420
BstSFI	CTRYAG	1 cut(s)	115
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	6 cut(s)	191, 208, 229, 562, 571, 592
BstV2I	GAAGAC	1 cut(s)	115
BsuRI	GGCC	2 cut(s)	300, 406
BtgI	CCRYGG	1 cut(s)	137
BtrI	CACGTC	1 cut(s)	486
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	3 cut(s)	292, 299, 377
CseI	GACGC	1 cut(s)	556
CsiI	ACCWGGT	1 cut(s)	373
CviAII	CATG	3 cut(s)	138, 326, 352
DdeI	CTNAG	2 cut(s)	14, 441
DpnI	GATC	3 cut(s)	75, 96, 168
DpnII	GATC	3 cut(s)	73, 94, 166
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
EaeI	YGGCCR	1 cut(s)	404
Eam1104I	CTCTTC	2 cut(s)	500, 588
EarI	CTCTTC	2 cut(s)	500, 588
Eco130I	CCWWGG	3 cut(s)	137, 264, 295
Eco31I	GGTCTC	2 cut(s)	10, 127
Eco47I	GGWCC	2 cut(s)	292, 377
Eco57I	CTGAAG	1 cut(s)	481
Eco88I	CYCGRG	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	299
EcoRII	CCWGG	2 cut(s)	373, 420
EcoT14I	CCWWGG	3 cut(s)	137, 264, 295
ErhI	CCWWGG	3 cut(s)	137, 264, 295
Esp3I	CGTCTC	1 cut(s)	200
FaeI	CATG	3 cut(s)	141, 329, 355
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	3 cut(s)	137, 325, 351
FauI	CCCGC	1 cut(s)	51
FblI	GTMKAC	1 cut(s)	488
Fnu4HI	GCNGC	7 cut(s)	153, 180, 222, 243, 551, 560, 581
Fsp4HI	GCNGC	7 cut(s)	153, 180, 222, 243, 551, 560, 581
GluI	GCNGC	7 cut(s)	153, 180, 222, 243, 551, 560, 581
HaeIII	GGCC	2 cut(s)	300, 406
HapII	CCGG	1 cut(s)	47
HgaI	GACGC	1 cut(s)	556
Hin1II	CATG	3 cut(s)	141, 329, 355
HincII	GTYRAC	2 cut(s)	489, 503
HindII	GTYRAC	2 cut(s)	489, 503
HinfI	GANTC	3 cut(s)	31, 347, 490
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	1 cut(s)	351
Hpy166II	GTNNAC	3 cut(s)	380, 489, 503
Hpy188I	TCNGA	2 cut(s)	36, 73
Hpy188III	TCNNGA	2 cut(s)	196, 205
Hpy8I	GTNNAC	3 cut(s)	380, 489, 503
Hpy99I	CGWCG	1 cut(s)	490
HpyAV	CCTTC	2 cut(s)	393, 528
HpyCH4IV	ACGT	1 cut(s)	485
HpyCH4V	TGCA	1 cut(s)	329
HpyF10VI	GCNNNNNNNGC	4 cut(s)	218, 227, 556, 559
HpyF3I	CTNAG	2 cut(s)	14, 441
HpySE526I	ACGT	1 cut(s)	485
Hsp92II	CATG	3 cut(s)	141, 329, 355
Kzo9I	GATC	3 cut(s)	73, 94, 166
LpnPI	CCDG	8 cut(s)	60, 99, 175, 297, 360, 387, 407, 434
Lsp1109I	GCAGC	6 cut(s)	191, 208, 229, 562, 571, 592
MabI	ACCWGGT	1 cut(s)	373
MaeII	ACGT	1 cut(s)	485
MaeIII	GTNAC	2 cut(s)	455, 608
MalI	GATC	3 cut(s)	75, 96, 168
MbiI	CCGCTC	1 cut(s)	11
MboI	GATC	3 cut(s)	73, 94, 166
MlsI	TGGCCA	1 cut(s)	406
MluCI	AATT	3 cut(s)	251, 601, 613
MluNI	TGGCCA	1 cut(s)	406
MlyI	GAGTC	1 cut(s)	484
MmeI	TCCRAC	1 cut(s)	59
MnlI	CCTC	9 cut(s)	113, 208, 257, 329, 372, 375, 378, 457, 547
Mox20I	TGGCCA	1 cut(s)	406
MscI	TGGCCA	1 cut(s)	406
Msp20I	TGGCCA	1 cut(s)	406
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	2 cut(s)	375, 422
MvaI	CCWGG	2 cut(s)	375, 422
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	4 cut(s)	218, 227, 556, 559
NcoI	CCATGG	1 cut(s)	137
NdeII	GATC	3 cut(s)	73, 94, 166
NlaIII	CATG	3 cut(s)	141, 329, 355
NlaIV	GGNNCC	2 cut(s)	262, 293
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	31, 347
PflFI	GACNNNGTC	1 cut(s)	375
PkrI	GCNGC	7 cut(s)	154, 181, 223, 244, 552, 561, 582
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
PsiI	TTATAA	2 cut(s)	417, 621
Psp6I	CCWGG	2 cut(s)	373, 420
PspGI	CCWGG	2 cut(s)	373, 420
PspN4I	GGNNCC	2 cut(s)	262, 293
PspPI	GGNCC	3 cut(s)	292, 299, 377
PsyI	GACNNNGTC	1 cut(s)	375
SalI	GTCGAC	1 cut(s)	487
SatI	GCNGC	7 cut(s)	153, 180, 222, 243, 551, 560, 581
Sau3AI	GATC	3 cut(s)	73, 94, 166
Sau96I	GGNCC	3 cut(s)	292, 299, 377
SchI	GAGTC	1 cut(s)	484
ScrFI	CCNGG	2 cut(s)	375, 422
SexAI	ACCWGGT	1 cut(s)	373
SfcI	CTRYAG	1 cut(s)	115
SinI	GGWCC	2 cut(s)	292, 377
Sse9I	AATT	3 cut(s)	251, 601, 613
SsiI	CCGC	4 cut(s)	9, 44, 152, 163
StyD4I	CCNGG	2 cut(s)	373, 420
StyI	CCWWGG	3 cut(s)	137, 264, 295
TaiI	ACGT	1 cut(s)	488
TaqI	TCGA	3 cut(s)	204, 370, 488
TaqII	GACCGA	1 cut(s)	252
TasI	AATT	3 cut(s)	251, 601, 613
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	2 cut(s)	31, 347
TseI	GCWGC	6 cut(s)	179, 221, 242, 550, 559, 580
TspDTI	ATGAA	2 cut(s)	368, 513
Tth111I	GACNNNGTC	1 cut(s)	375
VpaK11BI	GGWCC	2 cut(s)	292, 377
XapI	RAATTY	1 cut(s)	251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	144
XmiI	GTMKAC	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.