Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0013847

Physical Location & Seq

Genomic Coordinates Forward (+)

39439725 .. 39444095

Gene Structure 4371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0230000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGCCTTAAATGATCTGGCGAACTATTTTTTCTTCACTGGTCAACATTCTGTAGTTGAGCAACTAACTGAGACTGCACTTGCTATCACCAACCATGGACCAACAAGGTCACATTCCTACTACAGTTTAGCACGATCTTACCATAGCAAGGGACTGGCTATGATTATGCCACTTCTGAAGTTGCTGTTCTTCGACAGGAATCAAGTCTGCCACATTATGGTTGAAGATATGAGATTGATAATCCATAACTTGGGAAAGTTACAGGGATGTCAACGTCAGAATCTTCATTTTATGGGGGAAGACCTCAAATTAAGTATGAAAGAGATTCAGAATTTGGAGCAGCTACTTCATTCTGCTCTGAAGCACATAAGCGTTGCAGTTGGTGATGGCTTCCATAGTTCTATTGCTGTGATTGAGCTTTCAGTTTTTGGTTTGGTTGAATACATTGAGCAGGAAAAGAGGCTAGAAGAGGAAGATGCAGAAGTACAGTTAAATATGGAGCTCACTAAAGGGGCTGCTTATGCTAAAATGGCTAGAAACTTACGCAGCAAGCTTTATGAGGTTGATATGCATTTGGAAGAACTCCGAGATATGCATGAGAACTCCTGTTGTGATTTGATTGATGAATTCTGGGTTTTAATACATTCTGGTAGTTTGATCTTTTTTGTAAACCTCCATATGGAGACTGCTTCATTAGTTGATGTCCATCACATTCAAGAGCAAATGAGGTCCTCACCAGCACAGAAGAAGCCTCACAAGCTAAGAACTAACCACGGTAACAGGGTTACTAGTTGCTCCAAGTCCAAAATTGCAGCTTCTAATGTATCAGAGCTCACTGAATCTAAAACCGTGCATCAATTTTTTCATCCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071497 GO:0071704 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

291

Amino Acids

33.3

Weight (kDa)

6.27

Isoelectric Point (pI)

51.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	87 - 123	7.4e-06	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13330
fragaria_vesca	FvH4_4g22650
malus_domestica	MD13G1130700.v1.1 MD16G1140800.v1.1
prunus_persica	Prupe.1G214900_v2.0.a1
pyrus_communis	pycom13g11410 pycom16g11140
rosa_chinensis	RchiOBHm_Chr4g0428891
rosa_laevigata	RLG00000007117
rosa_multiflora	Rmu_sc0008612.1_g000008
rosa_roxburghii	Rroxscaffold_5G00370560
rosa_rugosa	Rorug04G0230000
rosa_samantha	Rh4AG286700 Rh4BG292500 Rh4CG308500 Rh4DG289700
rosa_wichuraiana	Rw4G024860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	217, 250
AcsI	RAATTY	2 cut(s)	331, 626
AcuI	CTGAAG	2 cut(s)	197, 380
AfaI	GTAC	1 cut(s)	486
AfiI	CCNNNNNNNGG	4 cut(s)	148, 217, 250, 679
AgsI	TTSAA	3 cut(s)	224, 440, 716
AhlI	ACTAGT	1 cut(s)	788
AluBI	AGCT	7 cut(s)	343, 418, 502, 553, 760, 815, 832
AluI	AGCT	7 cut(s)	343, 418, 502, 553, 760, 815, 832
Alw21I	GWGCWC	2 cut(s)	504, 834
Alw26I	GTCTC	2 cut(s)	65, 677
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	340, 515, 546, 812
ApoI	RAATTY	2 cut(s)	331, 626
AspS9I	GGNCC	2 cut(s)	98, 729
AsuHPI	GGTGA	3 cut(s)	79, 395, 726
AvaII	GGWCC	2 cut(s)	98, 729
BanII	GRGCYC	2 cut(s)	504, 834
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	2 cut(s)	504, 834
BbvI	GCAGC	4 cut(s)	352, 502, 558, 824
BccI	CCATC	2 cut(s)	380, 714
BcoDI	GTCTC	2 cut(s)	65, 677
BcuI	ACTAGT	1 cut(s)	788
BfaI	CTAG	3 cut(s)	464, 534, 789
BfmI	CTRYAG	2 cut(s)	51, 121
BisI	GCNGC	4 cut(s)	341, 516, 547, 813
BlsI	GCNGC	4 cut(s)	342, 517, 548, 814
Bme18I	GGWCC	2 cut(s)	98, 729
BmgT120I	GGNCC	2 cut(s)	98, 729
BmsI	GCATC	2 cut(s)	466, 862
BpiI	GAAGAC	1 cut(s)	306
BsaBI	GATNNNNATC	1 cut(s)	705
BsaJI	CCNNGG	2 cut(s)	94, 772
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 217, 250, 679
Bse1I	ACTGG	2 cut(s)	43, 159
Bse8I	GATNNNNATC	1 cut(s)	705
BseDI	CCNNGG	2 cut(s)	94, 772
BseGI	GGATG	2 cut(s)	272, 865
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	4 cut(s)	148, 217, 250, 679
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	2 cut(s)	43, 159
BseXI	GCAGC	4 cut(s)	352, 502, 558, 824
BsgI	GTGCAG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	2 cut(s)	504, 834
BslFI	GGGAC	1 cut(s)	165
BslI	CCNNNNNNNGG	4 cut(s)	148, 217, 250, 679
BsmAI	GTCTC	2 cut(s)	65, 677
BsmFI	GGGAC	1 cut(s)	165
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	504, 834
Bsp143I	GATC	3 cut(s)	13, 134, 657
Bsp19I	CCATGG	1 cut(s)	94
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	61
BsrI	ACTGG	2 cut(s)	43, 159
BssECI	CCNNGG	2 cut(s)	94, 772
BssMI	GATC	3 cut(s)	13, 134, 657
BssT1I	CCWWGG	1 cut(s)	94
Bst4CI	ACNGT	4 cut(s)	125, 489, 776, 850
Bst6I	CTCTTC	1 cut(s)	462
BstC8I	GCNNGC	1 cut(s)	551
BstDEI	CTNAG	2 cut(s)	69, 761
BstDSI	CCRYGG	2 cut(s)	94, 772
BstF5I	GGATG	2 cut(s)	272, 865
BstKTI	GATC	3 cut(s)	16, 137, 660
BstMAI	GTCTC	2 cut(s)	65, 677
BstMBI	GATC	3 cut(s)	13, 134, 657
BstMWI	GCNNNNNNNGC	3 cut(s)	521, 530, 757
BstSFI	CTRYAG	2 cut(s)	51, 121
BstV1I	GCAGC	4 cut(s)	352, 502, 558, 824
BstV2I	GAAGAC	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	2 cut(s)	94, 772
BtsCI	GGATG	2 cut(s)	272, 865
BtsIMutI	CAGTG	2 cut(s)	36, 834
Cac8I	GCNNGC	1 cut(s)	551
Cfr13I	GGNCC	2 cut(s)	98, 729
Csp6I	GTAC	1 cut(s)	485
CviAII	CATG	2 cut(s)	95, 596
CviQI	GTAC	1 cut(s)	485
DdeI	CTNAG	2 cut(s)	69, 761
DpnI	GATC	3 cut(s)	15, 136, 659
DpnII	GATC	3 cut(s)	13, 134, 657
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Ecl136II	GAGCTC	2 cut(s)	502, 832
Eco130I	CCWWGG	1 cut(s)	94
Eco24I	GRGCYC	2 cut(s)	504, 834
Eco47I	GGWCC	2 cut(s)	98, 729
Eco53kI	GAGCTC	2 cut(s)	502, 832
Eco57I	CTGAAG	2 cut(s)	197, 380
EcoICRI	GAGCTC	2 cut(s)	502, 832
EcoO109I	RGGNCCY	1 cut(s)	729
EcoRI	GAATTC	1 cut(s)	626
EcoT14I	CCWWGG	1 cut(s)	94
EcoT22I	ATGCAT	2 cut(s)	573, 597
EcoT38I	GRGCYC	2 cut(s)	504, 834
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	2 cut(s)	98, 599
FaqI	GGGAC	1 cut(s)	165
FatI	CATG	2 cut(s)	94, 595
FauNDI	CATATG	1 cut(s)	678
Fnu4HI	GCNGC	4 cut(s)	341, 516, 547, 813
FokI	GGATG	2 cut(s)	279, 852
FriOI	GRGCYC	2 cut(s)	504, 834
Fsp4HI	GCNGC	4 cut(s)	341, 516, 547, 813
FspBI	CTAG	3 cut(s)	464, 534, 789
GluI	GCNGC	4 cut(s)	341, 516, 547, 813
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	98, 599
HincII	GTYRAC	2 cut(s)	44, 272
HindII	GTYRAC	2 cut(s)	44, 272
HindIII	AAGCTT	1 cut(s)	551
HinfI	GANTC	4 cut(s)	199, 280, 325, 839
HphI	GGTGA	3 cut(s)	79, 395, 726
Hpy166II	GTNNAC	3 cut(s)	44, 272, 670
Hpy188I	TCNGA	6 cut(s)	177, 279, 330, 360, 587, 829
Hpy188III	TCNNGA	1 cut(s)	716
Hpy8I	GTNNAC	3 cut(s)	44, 272, 670
HpyCH4III	ACNGT	4 cut(s)	125, 489, 776, 850
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	7 cut(s)	77, 377, 479, 571, 595, 812, 853
HpyF10VI	GCNNNNNNNGC	3 cut(s)	521, 530, 757
HpyF3I	CTNAG	2 cut(s)	69, 761
HpySE526I	ACGT	1 cut(s)	274
Hsp92II	CATG	2 cut(s)	98, 599
Kzo9I	GATC	3 cut(s)	13, 134, 657
LmnI	GCTCC	3 cut(s)	337, 499, 800
Lsp1109I	GCAGC	4 cut(s)	352, 502, 558, 824
LweI	GCATC	2 cut(s)	466, 862
MaeI	CTAG	3 cut(s)	464, 534, 789
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	4 cut(s)	108, 258, 776, 784
MalI	GATC	3 cut(s)	15, 136, 659
MboI	GATC	3 cut(s)	13, 134, 657
MboII	GAAGA	9 cut(s)	25, 181, 236, 275, 311, 479, 485, 590, 757
MhlI	GDGCHC	2 cut(s)	504, 834
MluCI	AATT	5 cut(s)	308, 331, 626, 807, 857
MnlI	CCTC	8 cut(s)	314, 453, 463, 553, 683, 720, 742, 762
Mph1103I	ATGCAT	2 cut(s)	573, 597
MseI	TTAA	5 cut(s)	8, 311, 491, 638, 874
MwoI	GCNNNNNNNGC	3 cut(s)	521, 530, 757
NcoI	CCATGG	1 cut(s)	94
NdeI	CATATG	1 cut(s)	678
NdeII	GATC	3 cut(s)	13, 134, 657
NlaIII	CATG	2 cut(s)	98, 599
NmuCI	GTSAC	1 cut(s)	108
NsiI	ATGCAT	2 cut(s)	573, 597
PfeI	GAWTC	4 cut(s)	199, 280, 325, 839
PflMI	CCANNNNNTGG	2 cut(s)	217, 250
PkrI	GCNGC	4 cut(s)	342, 517, 548, 814
PpuMI	RGGWCCY	1 cut(s)	729
Psp124BI	GAGCTC	2 cut(s)	504, 834
Psp5II	RGGWCCY	1 cut(s)	729
PspPI	GGNCC	2 cut(s)	98, 729
PspPPI	RGGWCCY	1 cut(s)	729
RsaI	GTAC	1 cut(s)	486
RsaNI	GTAC	1 cut(s)	485
SacI	GAGCTC	2 cut(s)	504, 834
SaqAI	TTAA	5 cut(s)	8, 311, 491, 638, 874
SatI	GCNGC	4 cut(s)	341, 516, 547, 813
Sau3AI	GATC	3 cut(s)	13, 134, 657
Sau96I	GGNCC	2 cut(s)	98, 729
SduI	GDGCHC	2 cut(s)	504, 834
SfaNI	GCATC	2 cut(s)	466, 862
SfcI	CTRYAG	2 cut(s)	51, 121
SinI	GGWCC	2 cut(s)	98, 729
SpeI	ACTAGT	1 cut(s)	788
Sse9I	AATT	5 cut(s)	308, 331, 626, 807, 857
SspMI	CTAG	3 cut(s)	464, 534, 789
SstI	GAGCTC	2 cut(s)	504, 834
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	4 cut(s)	125, 489, 776, 850
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	1 cut(s)	192
TasI	AATT	5 cut(s)	308, 331, 626, 807, 857
TatI	WGTACW	1 cut(s)	484
TfiI	GAWTC	4 cut(s)	199, 280, 325, 839
Tru1I	TTAA	5 cut(s)	8, 311, 491, 638, 874
Tru9I	TTAA	5 cut(s)	8, 311, 491, 638, 874
TscAI	CASTG	2 cut(s)	43, 841
TseFI	GTSAC	1 cut(s)	108
TseI	GCWGC	4 cut(s)	340, 515, 546, 812
Tsp45I	GTSAC	1 cut(s)	108
TspDTI	ATGAA	6 cut(s)	275, 332, 338, 639, 681, 854
TspRI	CASTG	2 cut(s)	43, 841
Van91I	CCANNNNNTGG	2 cut(s)	217, 250
VpaK11BI	GGWCC	2 cut(s)	98, 729
XapI	RAATTY	2 cut(s)	331, 626
XspI	CTAG	3 cut(s)	464, 534, 789
Zsp2I	ATGCAT	2 cut(s)	573, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.