Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0013847

Physical Location & Seq

Genomic Coordinates Forward (+)

7737420 .. 7739755

Gene Structure 2336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g11140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGAAAACGCCCGCTTCCTTCAGAAGCATCAGAGGAGAAAGAAAGGGAGCGATCATCCCCCCCTCCATGATTTCCCTTCTAACTACGAATCTTCCTGGACGGAAGCTGACATGTCAGCCATGGTTTCTGCTCTCACTCAAGTTATTGGAACCACCGATGATCATGCTGCCGTGCAACCAAACCCTACATCCATCTCAGACTCATCACTCCTAGTCAAACAAGAACCTGACCGCTCTCAACCGGTTCAAGATCAAGAGCCCGTAAGGAGGCGACACTATAGAGGAGTGAGACAAAGACCTTGGGGAAAATGGGCGGCTGAAATACGTGACCCAAAGAAAGCAGCCAGAGTTTGGCTTGGGACTTTCGAGACCGCCGAAGATGCCGCCATTGCATATGACAACGCAGCTCTCAAGTTCAAAGGTACAAAAGCCAAGCTCAACTTCCCCGAACGAGTTCAAGGCAAGACCGATTTCGGCATCCTAATGGGCAGTTCTGGTAGTACTACAAGTAGTAGTGGTGCTGCCTCGACTCAACGAACACAAAATCTCATGACACCAGCTGGCCATATTGTTAATCCTCAGCGGGCTACTGCTCCATTAATGATGTCGCAGCAGCCGGAAACTTTCCCTGATCTTTATCAGTACGCGCGGCTTCTTTCCGGCAATGATGCTGATTTCTACAATTATTCTTCCTATCCATTTAATCAAGATCCAAGATTTACTTCACAGTTTTTGCCATCATCGACGCATTTTTCATCTTCCACTGCATCACAAGATTCACAACCATCGCAACAAAGACAACAAGATCATGAGGAAGATGGGAGGAATAAGGACTGGAATTTGAGTAATCCAAGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071497 GO:0071704 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

287

Amino Acids

32.17

Weight (kDa)

7.12

Isoelectric Point (pI)

58.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	92 - 141	1.2e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13330
fragaria_vesca	FvH4_4g22650
malus_domestica	MD13G1130700.v1.1 MD16G1140800.v1.1
prunus_persica	Prupe.1G214900_v2.0.a1
pyrus_communis	pycom13g11410 pycom16g11140
rosa_chinensis	RchiOBHm_Chr4g0428891
rosa_laevigata	RLG00000007117
rosa_multiflora	Rmu_sc0008612.1_g000008
rosa_roxburghii	Rroxscaffold_5G00370560
rosa_rugosa	Rorug04G0230000
rosa_samantha	Rh4AG286700 Rh4BG292500 Rh4CG308500 Rh4DG289700
rosa_wichuraiana	Rw4G024860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	351
AccBSI	CCGCTC	1 cut(s)	234
AccII	CGCG	2 cut(s)	647, 649
AciI	CCGC	7 cut(s)	13, 232, 314, 372, 384, 583, 649
AclWI	GGATC	1 cut(s)	704
AcoI	YGGCCR	1 cut(s)	562
AcsI	RAATTY	1 cut(s)	838
AcuI	CTGAAG	1 cut(s)	5
AfaI	GTAC	3 cut(s)	424, 502, 644
AfiI	CCNNNNNNNGG	2 cut(s)	267, 351
AflIII	ACRYGT	1 cut(s)	111
AgeI	ACCGGT	1 cut(s)	241
AgsI	TTSAA	3 cut(s)	248, 418, 458
AjnI	CCWGG	1 cut(s)	95
AjuI	GAANNNNNNNTTGG	4 cut(s)	425, 457, 706, 738
AluBI	AGCT	4 cut(s)	107, 407, 436, 560
AluI	AGCT	4 cut(s)	107, 407, 436, 560
Alw26I	GTCTC	2 cut(s)	283, 362
AlwI	GGATC	1 cut(s)	704
AoxI	GGCC	1 cut(s)	562
ApeKI	GCWGC	6 cut(s)	167, 341, 404, 521, 610, 613
ApoI	RAATTY	1 cut(s)	838
AseI	ATTAAT	1 cut(s)	599
AsiGI	ACCGGT	1 cut(s)	241
Asp700I	GAANNNNTTC	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	649
BalI	TGGCCA	1 cut(s)	564
BanII	GRGCYC	1 cut(s)	261
BbvCI	CCTCAGC	1 cut(s)	579
BbvI	GCAGC	6 cut(s)	154, 353, 416, 508, 622, 625
BccI	CCATC	4 cut(s)	200, 745, 793, 812
BceAI	ACGGC	1 cut(s)	155
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BciT130I	CCWGG	1 cut(s)	97
BclI	TGATCA	1 cut(s)	160
BcoDI	GTCTC	2 cut(s)	283, 362
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	277
BisI	GCNGC	9 cut(s)	168, 315, 342, 384, 405, 522, 611, 614, 650
BlsI	GCNGC	9 cut(s)	169, 316, 343, 385, 406, 523, 612, 615, 651
BmcAI	AGTACT	1 cut(s)	502
Bme1390I	CCNGG	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	151
BmrFI	CCNGG	1 cut(s)	97
BmsI	GCATC	5 cut(s)	37, 370, 486, 658, 776
Bpu10I	CCTNAGC	1 cut(s)	579
BpuEI	CTTGAG	2 cut(s)	123, 395
BsaAI	YACGTR	1 cut(s)	326
BsaBI	GATNNNNATC	1 cut(s)	636
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	3 cut(s)	120, 299, 851
BsaWI	WCCGGW	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	2 cut(s)	267, 351
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	839
Bse3DI	GCAATG	2 cut(s)	387, 670
Bse8I	GATNNNNATC	1 cut(s)	636
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	3 cut(s)	120, 299, 851
BseGI	GGATG	3 cut(s)	55, 188, 477
BseJI	GATNNNNATC	1 cut(s)	636
BseLI	CCNNNNNNNGG	2 cut(s)	267, 351
BseMI	GCAATG	2 cut(s)	387, 670
BseMII	CTCAG	2 cut(s)	210, 593
BseNI	ACTGG	1 cut(s)	839
BseRI	GAGGAG	2 cut(s)	49, 297
BseXI	GCAGC	6 cut(s)	154, 353, 416, 508, 622, 625
Bsh1236I	CGCG	2 cut(s)	647, 649
BshFI	GGCC	1 cut(s)	564
BshTI	ACCGGT	1 cut(s)	241
BsiSI	CCGG	3 cut(s)	242, 617, 660
BslFI	GGGAC	1 cut(s)	373
BslI	CCNNNNNNNGG	2 cut(s)	267, 351
BsmAI	GTCTC	2 cut(s)	283, 362
BsmFI	GGGAC	1 cut(s)	373
BsnI	GGCC	1 cut(s)	564
Bso31I	GGTCTC	1 cut(s)	362
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	6 cut(s)	52, 160, 250, 631, 709, 805
Bsp19I	CCATGG	1 cut(s)	120
BspACI	CCGC	7 cut(s)	13, 232, 314, 372, 384, 583, 649
BspANI	GGCC	1 cut(s)	564
BspCNI	CTCAG	2 cut(s)	209, 592
BspFNI	CGCG	2 cut(s)	647, 649
BspHI	TCATGA	2 cut(s)	549, 808
BspLI	GGNNCC	1 cut(s)	151
BspPI	GGATC	1 cut(s)	704
BspTNI	GGTCTC	1 cut(s)	362
BsrBI	CCGCTC	1 cut(s)	234
BsrDI	GCAATG	2 cut(s)	387, 670
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	839
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	3 cut(s)	120, 299, 851
BssMI	GATC	6 cut(s)	52, 160, 250, 631, 709, 805
BssT1I	CCWWGG	3 cut(s)	120, 299, 851
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	1 cut(s)	729
BstBAI	YACGTR	1 cut(s)	326
BstC8I	GCNNGC	3 cut(s)	13, 562, 585
BstDEI	CTNAG	2 cut(s)	196, 579
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	3 cut(s)	55, 188, 477
BstFNI	CGCG	2 cut(s)	647, 649
BstHHI	GCGC	1 cut(s)	649
BstKTI	GATC	6 cut(s)	55, 163, 253, 634, 712, 808
BstMAI	GTCTC	2 cut(s)	283, 362
BstMBI	GATC	6 cut(s)	52, 160, 250, 631, 709, 805
BstMWI	GCNNNNNNNGC	2 cut(s)	380, 389
BstNI	CCWGG	1 cut(s)	97
BstNSI	RCATGY	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	95
BstSFI	CTRYAG	1 cut(s)	277
BstUI	CGCG	2 cut(s)	647, 649
BstV1I	GCAGC	6 cut(s)	154, 353, 416, 508, 622, 625
BstX2I	RGATCY	1 cut(s)	709
BstYI	RGATCY	1 cut(s)	709
BsuRI	GGCC	1 cut(s)	564
BtgI	CCRYGG	1 cut(s)	120
BtgZI	GCGATG	1 cut(s)	771
BtsCI	GGATG	3 cut(s)	55, 188, 477
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	1 cut(s)	762
Cac8I	GCNNGC	3 cut(s)	13, 562, 585
CciI	TCATGA	2 cut(s)	549, 808
CfoI	GCGC	1 cut(s)	649
Cfr10I	RCCGGY	1 cut(s)	241
CseI	GACGC	1 cut(s)	754
Csp6I	GTAC	3 cut(s)	423, 501, 643
CspAI	ACCGGT	1 cut(s)	241
CviAII	CATG	6 cut(s)	68, 112, 121, 164, 550, 809
CviQI	GTAC	3 cut(s)	423, 501, 643
DdeI	CTNAG	2 cut(s)	196, 579
DpnI	GATC	6 cut(s)	54, 162, 252, 633, 711, 807
DpnII	GATC	6 cut(s)	52, 160, 250, 631, 709, 805
EaeI	YGGCCR	1 cut(s)	562
Eco130I	CCWWGG	3 cut(s)	120, 299, 851
Eco24I	GRGCYC	1 cut(s)	261
Eco31I	GGTCTC	1 cut(s)	362
Eco57I	CTGAAG	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	95
EcoT14I	CCWWGG	3 cut(s)	120, 299, 851
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	3 cut(s)	120, 299, 851
FaeI	CATG	6 cut(s)	71, 115, 124, 167, 553, 812
FalI	AAGNNNNNCTT	4 cut(s)	425, 457, 706, 738
FaqI	GGGAC	1 cut(s)	373
FatI	CATG	6 cut(s)	67, 111, 120, 163, 549, 808
FauI	CCCGC	2 cut(s)	20, 576
FauNDI	CATATG	1 cut(s)	394
FbaI	TGATCA	1 cut(s)	160
Fnu4HI	GCNGC	9 cut(s)	168, 315, 342, 384, 405, 522, 611, 614, 650
FokI	GGATG	3 cut(s)	42, 175, 464
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	9 cut(s)	168, 315, 342, 384, 405, 522, 611, 614, 650
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	1 cut(s)	648
GluI	GCNGC	9 cut(s)	168, 315, 342, 384, 405, 522, 611, 614, 650
HaeIII	GGCC	1 cut(s)	564
HapII	CCGG	3 cut(s)	242, 617, 660
HgaI	GACGC	1 cut(s)	754
HhaI	GCGC	1 cut(s)	649
Hin1II	CATG	6 cut(s)	71, 115, 124, 167, 553, 812
Hin6I	GCGC	1 cut(s)	647
HinP1I	GCGC	1 cut(s)	647
HinfI	GANTC	4 cut(s)	89, 200, 529, 776
HpaII	CCGG	3 cut(s)	242, 617, 660
Hpy188I	TCNGA	3 cut(s)	24, 33, 199
Hpy188III	TCNNGA	6 cut(s)	248, 254, 367, 550, 707, 809
Hpy99I	CGWCG	1 cut(s)	748
HpyAV	CCTTC	2 cut(s)	29, 87
HpyCH4III	ACNGT	1 cut(s)	729
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	3 cut(s)	175, 392, 767
HpyF10VI	GCNNNNNNNGC	2 cut(s)	380, 389
HpyF3I	CTNAG	2 cut(s)	196, 579
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	6 cut(s)	71, 115, 124, 167, 553, 812
HspAI	GCGC	1 cut(s)	647
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	6 cut(s)	52, 160, 250, 631, 709, 805
LmnI	GCTCC	2 cut(s)	48, 598
Lsp1109I	GCAGC	6 cut(s)	154, 353, 416, 508, 622, 625
LweI	GCATC	5 cut(s)	37, 370, 486, 658, 776
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	6 cut(s)	54, 162, 252, 633, 711, 807
MbiI	CCGCTC	1 cut(s)	234
MboI	GATC	6 cut(s)	52, 160, 250, 631, 709, 805
MboII	GAAGA	5 cut(s)	84, 389, 681, 750, 827
MflI	RGATCY	1 cut(s)	709
MhlI	GDGCHC	1 cut(s)	261
MlsI	TGGCCA	1 cut(s)	564
MluCI	AATT	2 cut(s)	682, 838
MluNI	TGGCCA	1 cut(s)	564
MlyI	GAGTC	2 cut(s)	194, 523
MnlI	CCTC	8 cut(s)	27, 74, 261, 275, 535, 588, 805, 816
Mox20I	TGGCCA	1 cut(s)	564
MroXI	GAANNNNTTC	1 cut(s)	453
MscI	TGGCCA	1 cut(s)	564
MseI	TTAA	3 cut(s)	573, 599, 702
MslI	CAYNNNNRTG	1 cut(s)	482
Msp20I	TGGCCA	1 cut(s)	564
MspA1I	CMGCKG	2 cut(s)	560, 583
MspI	CCGG	3 cut(s)	242, 617, 660
MspR9I	CCNGG	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	97
MvnI	CGCG	2 cut(s)	647, 649
MwoI	GCNNNNNNNGC	2 cut(s)	380, 389
NcoI	CCATGG	1 cut(s)	120
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	6 cut(s)	52, 160, 250, 631, 709, 805
NlaIII	CATG	6 cut(s)	71, 115, 124, 167, 553, 812
NlaIV	GGNNCC	1 cut(s)	151
NmuCI	GTSAC	1 cut(s)	326
NspI	RCATGY	1 cut(s)	115
PagI	TCATGA	2 cut(s)	549, 808
PciI	ACATGT	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	2 cut(s)	89, 776
PflMI	CCANNNNNTGG	1 cut(s)	351
PfoI	TCCNGGA	1 cut(s)	95
PinAI	ACCGGT	1 cut(s)	241
PkrI	GCNGC	9 cut(s)	169, 316, 343, 385, 406, 523, 612, 615, 651
PleI	GAGTC	2 cut(s)	194, 523
PpsI	GAGTC	2 cut(s)	194, 523
Ppu21I	YACGTR	1 cut(s)	326
PscI	ACATGT	1 cut(s)	111
PshBI	ATTAAT	1 cut(s)	599
Psp6I	CCWGG	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	709
PvuII	CAGCTG	1 cut(s)	560
RsaI	GTAC	3 cut(s)	424, 502, 644
RsaNI	GTAC	3 cut(s)	423, 501, 643
RseI	CAYNNNNRTG	1 cut(s)	482
SaqAI	TTAA	3 cut(s)	573, 599, 702
SatI	GCNGC	9 cut(s)	168, 315, 342, 384, 405, 522, 611, 614, 650
Sau3AI	GATC	6 cut(s)	52, 160, 250, 631, 709, 805
ScaI	AGTACT	1 cut(s)	502
SchI	GAGTC	2 cut(s)	194, 523
ScrFI	CCNGG	1 cut(s)	97
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	8 cut(s)	109, 229, 301, 328, 409, 424, 438, 562
SfaNI	GCATC	5 cut(s)	37, 370, 486, 658, 776
SfcI	CTRYAG	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	482
SmlI	CTYRAG	2 cut(s)	138, 410
SmoI	CTYRAG	2 cut(s)	138, 410
Sse9I	AATT	2 cut(s)	682, 838
SsiI	CCGC	7 cut(s)	13, 232, 314, 372, 384, 583, 649
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	95
StyI	CCWWGG	3 cut(s)	120, 299, 851
TaaI	ACNGT	1 cut(s)	729
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	3 cut(s)	366, 527, 743
TaqII	GACCGA	1 cut(s)	482
TasI	AATT	2 cut(s)	682, 838
TatI	WGTACW	1 cut(s)	500
TauI	GCSGC	3 cut(s)	317, 386, 652
TfiI	GAWTC	2 cut(s)	89, 776
Tru1I	TTAA	3 cut(s)	573, 599, 702
Tru9I	TTAA	3 cut(s)	573, 599, 702
TscAI	CASTG	1 cut(s)	769
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	6 cut(s)	167, 341, 404, 521, 610, 613
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	1 cut(s)	744
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	769
Van91I	CCANNNNNTGG	1 cut(s)	351
VspI	ATTAAT	1 cut(s)	599
XapI	RAATTY	1 cut(s)	838
XceI	RCATGY	1 cut(s)	115
XmnI	GAANNNNTTC	1 cut(s)	453
XspI	CTAG	1 cut(s)	212
ZrmI	AGTACT	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.