Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0013847

Physical Location & Seq

Genomic Coordinates Forward (+)

7846626 .. 7848866

Gene Structure 2241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g11410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTCAGCCATGGTTTCTGCTCTCACTCAAGTTATTGGAACCACCGAAGGGCATGCTGCCGTGCAACCAAACCCTACATCCATCTCAGACTCATCACCCCTAGTCAAACAAGAACCCGACCGCTCTGAACCGGTTCAAGATCAAGAGACCGTAAGGAGGCGACACTATAGAGGAGTGAGACAAAGACCTTGGGGCAAATGGGCAGCTGAAATACGTGACCCAAAGAAAGCAGCCAGAGTTTGGCTTGGGACTTTTGAGACCGCCGAAGATGCTGCCATTGCCTACGATAACGCAGCTCTCAGGTTCAAGGGCACAAAAGCCAAGCTCAACTTCCCCGAACGAGTTCAAGGCAAGACCGATTTTGGCATCCTAATGGGCAGTTCTGGTACTACAACAAACAGTAGCAGTGGTGCTGCCTCTACTCAACGAACACAAAATCTCATGGGACCAGCTGGCCGTATTGTTAATCCTCAGACAGCTCCTGCTCCATTAATCACGTCGCAGCAGCCGGAAACTTTCCCTGATCTTTATCAGTACGCGCAGCTTCTTTCCAGCAATGATGCTGATTTCTGCAATTATTCTTTTTATCCATTTAATCAAGATCCAAGATTTACTTCACAGTTTTCTCCATCATCGACGAATTTGTCATCTTCCACTGCATCACATGATTCACAACCATCGCAACAAAGACGACAAGATCATGAGGAGGATGCGGGGAATAAGGACTGGAATTCGAGTAATCCAAGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071497 GO:0071704 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

251

Amino Acids

27.56

Weight (kDa)

6.44

Isoelectric Point (pI)

59.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13330
fragaria_vesca	FvH4_4g22650
malus_domestica	MD13G1130700.v1.1 MD16G1140800.v1.1
prunus_persica	Prupe.1G214900_v2.0.a1
pyrus_communis	pycom13g11410 pycom16g11140
rosa_chinensis	RchiOBHm_Chr4g0428891
rosa_laevigata	RLG00000007117
rosa_multiflora	Rmu_sc0008612.1_g000008
rosa_roxburghii	Rroxscaffold_5G00370560
rosa_rugosa	Rorug04G0230000
rosa_samantha	Rh4AG286700 Rh4BG292500 Rh4CG308500 Rh4DG289700
rosa_wichuraiana	Rw4G024860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	643
AccB7I	CCANNNNNTGG	1 cut(s)	240
AccBSI	CCGCTC	1 cut(s)	123
AccII	CGCG	1 cut(s)	539
AciI	CCGC	3 cut(s)	121, 261, 713
AclWI	GGATC	1 cut(s)	596
AcoI	YGGCCR	1 cut(s)	454
AcsI	RAATTY	2 cut(s)	640, 730
AfaI	GTAC	2 cut(s)	388, 536
AfiI	CCNNNNNNNGG	3 cut(s)	48, 156, 240
AgeI	ACCGGT	1 cut(s)	130
AgsI	TTSAA	3 cut(s)	137, 307, 347
AjiI	CACGTC	1 cut(s)	498
AjuI	GAANNNNNNNTTGG	4 cut(s)	314, 346, 598, 630
AluBI	AGCT	6 cut(s)	206, 296, 325, 452, 479, 544
AluI	AGCT	6 cut(s)	206, 296, 325, 452, 479, 544
Alw26I	GTCTC	3 cut(s)	140, 172, 251
AlwI	GGATC	1 cut(s)	596
AlwNI	CAGNNNCTG	1 cut(s)	482
AoxI	GGCC	1 cut(s)	454
ApeKI	GCWGC	9 cut(s)	56, 203, 230, 272, 293, 413, 502, 505, 541
ApoI	RAATTY	2 cut(s)	640, 730
AseI	ATTAAT	1 cut(s)	491
AsiGI	ACCGGT	1 cut(s)	130
Asp700I	GAANNNNTTC	2 cut(s)	132, 342
AspLEI	GCGC	1 cut(s)	541
AspS9I	GGNCC	1 cut(s)	446
AsuHPI	GGTGA	1 cut(s)	87
AvaII	GGWCC	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	314
BbvI	GCAGC	9 cut(s)	43, 215, 242, 259, 305, 400, 514, 517, 553
BccI	CCATC	3 cut(s)	89, 637, 685
BceAI	ACGGC	2 cut(s)	44, 441
BcgI	CGANNNNNNTGC	4 cut(s)	35, 69, 254, 288
BcoDI	GTCTC	3 cut(s)	140, 172, 251
BfaI	CTAG	1 cut(s)	101
BfmI	CTRYAG	1 cut(s)	166
BisI	GCNGC	9 cut(s)	57, 204, 231, 273, 294, 414, 503, 506, 542
BlsI	GCNGC	9 cut(s)	58, 205, 232, 274, 295, 415, 504, 507, 543
Bme18I	GGWCC	1 cut(s)	446
BmgBI	CACGTC	1 cut(s)	498
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	2 cut(s)	40, 447
BmsI	GCATC	5 cut(s)	259, 375, 550, 668, 700
BpuEI	CTTGAG	1 cut(s)	12
BsaAI	YACGTR	1 cut(s)	215
BsaBI	GATNNNNATC	1 cut(s)	528
BsaI	GGTCTC	2 cut(s)	140, 251
BsaJI	CCNNGG	3 cut(s)	9, 188, 743
BsaWI	WCCGGW	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 156, 240
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	731
Bse3DI	GCAATG	2 cut(s)	276, 562
Bse8I	GATNNNNATC	1 cut(s)	528
BseDI	CCNNGG	3 cut(s)	9, 188, 743
BseGI	GGATG	3 cut(s)	77, 366, 715
BseJI	GATNNNNATC	1 cut(s)	528
BseLI	CCNNNNNNNGG	3 cut(s)	48, 156, 240
BseMI	GCAATG	2 cut(s)	276, 562
BseMII	CTCAG	3 cut(s)	99, 313, 485
BseNI	ACTGG	1 cut(s)	731
BseRI	GAGGAG	2 cut(s)	186, 719
BseSI	GKGCMC	1 cut(s)	314
BseXI	GCAGC	9 cut(s)	43, 215, 242, 259, 305, 400, 514, 517, 553
Bsh1236I	CGCG	1 cut(s)	539
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	1 cut(s)	456
BshTI	ACCGGT	1 cut(s)	130
BsiEI	CGRYCG	1 cut(s)	121
BsiSI	CCGG	2 cut(s)	131, 509
BslFI	GGGAC	2 cut(s)	262, 459
BslI	CCNNNNNNNGG	3 cut(s)	48, 156, 240
BsmAI	GTCTC	3 cut(s)	140, 172, 251
BsmFI	GGGAC	2 cut(s)	262, 459
BsnI	GGCC	1 cut(s)	456
Bso31I	GGTCTC	2 cut(s)	140, 251
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp143I	GATC	4 cut(s)	139, 523, 601, 697
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	3 cut(s)	121, 261, 713
BspANI	GGCC	1 cut(s)	456
BspCNI	CTCAG	3 cut(s)	98, 312, 484
BspFNI	CGCG	1 cut(s)	539
BspHI	TCATGA	1 cut(s)	700
BspLI	GGNNCC	2 cut(s)	40, 447
BspPI	GGATC	1 cut(s)	596
BspTNI	GGTCTC	2 cut(s)	140, 251
BsrBI	CCGCTC	1 cut(s)	123
BsrDI	GCAATG	2 cut(s)	276, 562
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	731
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	3 cut(s)	9, 188, 743
BssMI	GATC	4 cut(s)	139, 523, 601, 697
BssT1I	CCWWGG	3 cut(s)	9, 188, 743
Bst4CI	ACNGT	3 cut(s)	151, 401, 621
BstBAI	YACGTR	1 cut(s)	215
BstC8I	GCNNGC	2 cut(s)	54, 454
BstDEI	CTNAG	3 cut(s)	85, 299, 471
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	3 cut(s)	77, 366, 715
BstFNI	CGCG	1 cut(s)	539
BstHHI	GCGC	1 cut(s)	541
BstKTI	GATC	4 cut(s)	142, 526, 604, 700
BstMAI	GTCTC	3 cut(s)	140, 172, 251
BstMBI	GATC	4 cut(s)	139, 523, 601, 697
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 278
BstNSI	RCATGY	1 cut(s)	56
BstSFI	CTRYAG	1 cut(s)	166
BstSLI	GKGCMC	1 cut(s)	314
BstUI	CGCG	1 cut(s)	539
BstV1I	GCAGC	9 cut(s)	43, 215, 242, 259, 305, 400, 514, 517, 553
BstX2I	RGATCY	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	601
BsuRI	GGCC	1 cut(s)	456
BtgI	CCRYGG	1 cut(s)	9
BtgZI	GCGATG	1 cut(s)	663
BtrI	CACGTC	1 cut(s)	498
BtsCI	GGATG	3 cut(s)	77, 366, 715
BtsI	GCAGTG	2 cut(s)	412, 654
BtsIMutI	CAGTG	2 cut(s)	412, 654
Cac8I	GCNNGC	2 cut(s)	54, 454
CaiI	CAGNNNCTG	1 cut(s)	482
CciI	TCATGA	1 cut(s)	700
CfoI	GCGC	1 cut(s)	541
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	446
Csp6I	GTAC	2 cut(s)	387, 535
CspAI	ACCGGT	1 cut(s)	130
CviAII	CATG	5 cut(s)	10, 53, 442, 665, 701
CviQI	GTAC	2 cut(s)	387, 535
DdeI	CTNAG	3 cut(s)	85, 299, 471
DpnI	GATC	4 cut(s)	141, 525, 603, 699
DpnII	GATC	4 cut(s)	139, 523, 601, 697
DrdI	GACNNNNNNGTC	1 cut(s)	643
DseDI	GACNNNNNNGTC	1 cut(s)	643
EaeI	YGGCCR	1 cut(s)	454
Eco130I	CCWWGG	3 cut(s)	9, 188, 743
Eco31I	GGTCTC	2 cut(s)	140, 251
Eco47I	GGWCC	1 cut(s)	446
EcoRI	GAATTC	1 cut(s)	730
EcoT14I	CCWWGG	3 cut(s)	9, 188, 743
ErhI	CCWWGG	3 cut(s)	9, 188, 743
FaeI	CATG	5 cut(s)	13, 56, 445, 668, 704
FaiI	YATR	6 cut(s)	11, 54, 168, 443, 666, 702
FalI	AAGNNNNNCTT	4 cut(s)	314, 346, 598, 630
FaqI	GGGAC	2 cut(s)	262, 459
FatI	CATG	5 cut(s)	9, 52, 441, 664, 700
FauI	CCCGC	1 cut(s)	706
Fnu4HI	GCNGC	9 cut(s)	57, 204, 231, 273, 294, 414, 503, 506, 542
FokI	GGATG	3 cut(s)	64, 353, 722
Fsp4HI	GCNGC	9 cut(s)	57, 204, 231, 273, 294, 414, 503, 506, 542
FspBI	CTAG	1 cut(s)	101
GlaI	GCGC	1 cut(s)	540
GluI	GCNGC	9 cut(s)	57, 204, 231, 273, 294, 414, 503, 506, 542
HaeIII	GGCC	1 cut(s)	456
HapII	CCGG	2 cut(s)	131, 509
HhaI	GCGC	1 cut(s)	541
Hin1II	CATG	5 cut(s)	13, 56, 445, 668, 704
Hin6I	GCGC	1 cut(s)	539
HinP1I	GCGC	1 cut(s)	539
HinfI	GANTC	2 cut(s)	89, 668
HpaII	CCGG	2 cut(s)	131, 509
HphI	GGTGA	1 cut(s)	87
Hpy188I	TCNGA	3 cut(s)	88, 127, 474
Hpy188III	TCNNGA	4 cut(s)	137, 143, 599, 701
Hpy99I	CGWCG	2 cut(s)	502, 640
HpyAV	CCTTC	1 cut(s)	41
HpyCH4III	ACNGT	3 cut(s)	151, 401, 621
HpyCH4IV	ACGT	2 cut(s)	214, 497
HpyCH4V	TGCA	3 cut(s)	64, 573, 659
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 278
HpyF3I	CTNAG	3 cut(s)	85, 299, 471
HpySE526I	ACGT	2 cut(s)	214, 497
Hsp92II	CATG	5 cut(s)	13, 56, 445, 668, 704
HspAI	GCGC	1 cut(s)	539
Kzo9I	GATC	4 cut(s)	139, 523, 601, 697
LmnI	GCTCC	2 cut(s)	484, 490
Lsp1109I	GCAGC	9 cut(s)	43, 215, 242, 259, 305, 400, 514, 517, 553
LweI	GCATC	5 cut(s)	259, 375, 550, 668, 700
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	2 cut(s)	214, 497
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	4 cut(s)	141, 525, 603, 699
MbiI	CCGCTC	1 cut(s)	123
MboI	GATC	4 cut(s)	139, 523, 601, 697
MboII	GAAGA	2 cut(s)	278, 642
MflI	RGATCY	1 cut(s)	601
MhlI	GDGCHC	1 cut(s)	314
MluCI	AATT	3 cut(s)	574, 640, 730
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	6 cut(s)	150, 164, 427, 480, 697, 700
MroXI	GAANNNNTTC	2 cut(s)	132, 342
MseI	TTAA	3 cut(s)	465, 491, 594
MslI	CAYNNNNRTG	1 cut(s)	371
MspA1I	CMGCKG	2 cut(s)	206, 452
MspI	CCGG	2 cut(s)	131, 509
MvnI	CGCG	1 cut(s)	539
MwoI	GCNNNNNNNGC	2 cut(s)	269, 278
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	4 cut(s)	139, 523, 601, 697
NlaIII	CATG	5 cut(s)	13, 56, 445, 668, 704
NlaIV	GGNNCC	2 cut(s)	40, 447
NmuCI	GTSAC	1 cut(s)	215
NspI	RCATGY	1 cut(s)	56
PaeI	GCATGC	1 cut(s)	56
PagI	TCATGA	1 cut(s)	700
PdmI	GAANNNNTTC	2 cut(s)	132, 342
PfeI	GAWTC	1 cut(s)	668
PflMI	CCANNNNNTGG	1 cut(s)	240
PinAI	ACCGGT	1 cut(s)	130
PkrI	GCNGC	9 cut(s)	58, 205, 232, 274, 295, 415, 504, 507, 543
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Ppu21I	YACGTR	1 cut(s)	215
PshBI	ATTAAT	1 cut(s)	491
PspN4I	GGNNCC	2 cut(s)	40, 447
PspPI	GGNCC	1 cut(s)	446
PstNI	CAGNNNCTG	1 cut(s)	482
PsuI	RGATCY	1 cut(s)	601
PvuII	CAGCTG	2 cut(s)	206, 452
RsaI	GTAC	2 cut(s)	388, 536
RsaNI	GTAC	2 cut(s)	387, 535
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	3 cut(s)	465, 491, 594
SatI	GCNGC	9 cut(s)	57, 204, 231, 273, 294, 414, 503, 506, 542
Sau3AI	GATC	4 cut(s)	139, 523, 601, 697
Sau96I	GGNCC	1 cut(s)	446
SchI	GAGTC	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	314
SfaNI	GCATC	5 cut(s)	259, 375, 550, 668, 700
SfcI	CTRYAG	1 cut(s)	166
SinI	GGWCC	1 cut(s)	446
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
SphI	GCATGC	1 cut(s)	56
Sse9I	AATT	3 cut(s)	574, 640, 730
SsiI	CCGC	3 cut(s)	121, 261, 713
SspMI	CTAG	1 cut(s)	101
StyI	CCWWGG	3 cut(s)	9, 188, 743
TaaI	ACNGT	3 cut(s)	151, 401, 621
TaiI	ACGT	2 cut(s)	217, 500
TaqI	TCGA	2 cut(s)	635, 734
TaqII	GACCGA	1 cut(s)	371
TasI	AATT	3 cut(s)	574, 640, 730
TfiI	GAWTC	1 cut(s)	668
Tru1I	TTAA	3 cut(s)	465, 491, 594
Tru9I	TTAA	3 cut(s)	465, 491, 594
TscAI	CASTG	2 cut(s)	412, 661
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	9 cut(s)	56, 203, 230, 272, 293, 413, 502, 505, 541
Tsp45I	GTSAC	1 cut(s)	215
TspRI	CASTG	2 cut(s)	412, 661
Van91I	CCANNNNNTGG	1 cut(s)	240
VpaK11BI	GGWCC	1 cut(s)	446
VspI	ATTAAT	1 cut(s)	491
XapI	RAATTY	2 cut(s)	640, 730
XceI	RCATGY	1 cut(s)	56
XmnI	GAANNNNTTC	2 cut(s)	132, 342
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.