Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0013847

Physical Location & Seq

Genomic Coordinates Reverse (-)

60073426 .. 60074211

Gene Structure 786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG286700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGAACTTGTGTGTTTGTGAAGAGGGTACTGTGAGAAAAAGACATTATAGAGGAGTGAGGCAAAGGCCTTGGGGCAAATGGGCAGCCGAAATCCGAGACCCTAAGAAAGCAGCTCGAGTTTGGCTGGGAACTTTCGAGACAGCTGAGGATGCAGCCATTGCATATGATAATGCAGCTCTCAAGTTCAAAGGCACAAAAGCCAAGCTCAACTTTCCTGAGCGAGTTCAAGGCAACTCAAGCTTCCTTATGCAAGGTTCATCCGGCACAACAAGTAGCGGCCGCAGTGTCTCCACTGAACGAAATCTTGGCCGACCAGCTGCAACCGTTCCTCATCATGATGCTCCCTTGGTTGCAGCATCCCAGCAGCAGCAGGAAAGTAGTAGTTTTCCTGATCTATATCAATATGCGCAGCTGCTTCAAAGCAATGATGCTGATTTCAGCTCGAATTATCAGTACACTTCCAATCCATTCAATCAAGATAATCATCCGCAGTTTTCTACTCCACAGTTTCCACCATCAACATATTATCCGTCTCATCAACAACAAGGACAGCAAGACGATCATGGTCAGGAAGATCAGTATGATAACAAGAACTGGAATAGGCGCAATCCGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071497 GO:0071704 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

205

Amino Acids

23.19

Weight (kDa)

7.8

Isoelectric Point (pI)

56.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	15 - 64	6.7e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13330
fragaria_vesca	FvH4_4g22650
malus_domestica	MD13G1130700.v1.1 MD16G1140800.v1.1
prunus_persica	Prupe.1G214900_v2.0.a1
pyrus_communis	pycom13g11410 pycom16g11140
rosa_chinensis	RchiOBHm_Chr4g0428891
rosa_laevigata	RLG00000007117
rosa_multiflora	Rmu_sc0008612.1_g000008
rosa_roxburghii	Rroxscaffold_5G00370560
rosa_rugosa	Rorug04G0230000
rosa_samantha	Rh4AG286700 Rh4BG292500 Rh4CG308500 Rh4DG289700
rosa_wichuraiana	Rw4G024860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	408
AciI	CCGC	3 cut(s)	276, 280, 488
AcoI	YGGCCR	2 cut(s)	277, 307
AfaI	GTAC	2 cut(s)	28, 455
AgsI	TTSAA	4 cut(s)	187, 227, 419, 472
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AluBI	AGCT	9 cut(s)	113, 143, 176, 205, 240, 317, 412, 441, 615
AluI	AGCT	9 cut(s)	113, 143, 176, 205, 240, 317, 412, 441, 615
Alw26I	GTCTC	4 cut(s)	90, 131, 292, 537
Ama87I	CYCGRG	1 cut(s)	114
AoxI	GGCC	3 cut(s)	65, 277, 307
AspLEI	GCGC	2 cut(s)	409, 606
AvaI	CYCGRG	1 cut(s)	114
BbvCI	CCTCAGC	1 cut(s)	144
BccI	CCATC	1 cut(s)	523
BcoDI	GTCTC	4 cut(s)	90, 131, 292, 537
BfaI	CTAG	1 cut(s)	616
BmeT110I	CYCGRG	1 cut(s)	114
BmsI	GCATC	4 cut(s)	139, 328, 365, 418
Bpu10I	CCTNAGC	2 cut(s)	144, 216
BpuEI	CTTGAG	2 cut(s)	164, 220
BsaBI	GATNNNNATC	2 cut(s)	396, 483
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	68, 345
Bse1I	ACTGG	1 cut(s)	599
Bse3DI	GCAATG	2 cut(s)	156, 430
Bse8I	GATNNNNATC	2 cut(s)	396, 483
BseDI	CCNNGG	2 cut(s)	68, 345
BseGI	GGATG	4 cut(s)	154, 257, 356, 484
BseJI	GATNNNNATC	2 cut(s)	396, 483
BseMI	GCAATG	2 cut(s)	156, 430
BseMII	CTCAG	2 cut(s)	135, 207
BseNI	ACTGG	1 cut(s)	599
BseRI	GAGGAG	1 cut(s)	66
BseX3I	CGGCCG	1 cut(s)	277
BseYI	CCCAGC	2 cut(s)	124, 360
Bsh1285I	CGRYCG	1 cut(s)	280
BshFI	GGCC	3 cut(s)	67, 279, 309
BsiEI	CGRYCG	1 cut(s)	280
BsiHKCI	CYCGRG	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	261
BsmAI	GTCTC	4 cut(s)	90, 131, 292, 537
BsmBI	CGTCTC	1 cut(s)	537
BsnI	GGCC	3 cut(s)	67, 279, 309
Bso31I	GGTCTC	1 cut(s)	90
BsoBI	CYCGRG	1 cut(s)	114
Bsp143I	GATC	3 cut(s)	391, 559, 574
BspACI	CCGC	3 cut(s)	276, 280, 488
BspANI	GGCC	3 cut(s)	67, 279, 309
BspCNI	CTCAG	2 cut(s)	136, 208
BspHI	TCATGA	1 cut(s)	334
BspTNI	GGTCTC	1 cut(s)	90
BsrDI	GCAATG	2 cut(s)	156, 430
BsrI	ACTGG	1 cut(s)	599
BssECI	CCNNGG	2 cut(s)	68, 345
BssMI	GATC	3 cut(s)	391, 559, 574
BssT1I	CCWWGG	2 cut(s)	68, 345
Bst4CI	ACNGT	3 cut(s)	31, 325, 507
Bst6I	CTCTTC	1 cut(s)	15
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstDEI	CTNAG	3 cut(s)	102, 144, 216
BstF5I	GGATG	4 cut(s)	154, 257, 356, 484
BstHHI	GCGC	2 cut(s)	409, 606
BstKTI	GATC	3 cut(s)	394, 562, 577
BstMAI	GTCTC	4 cut(s)	90, 131, 292, 537
BstMBI	GATC	3 cut(s)	391, 559, 574
BstMCI	CGRYCG	1 cut(s)	280
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 158, 237, 612
BstZI	CGGCCG	1 cut(s)	277
BsuRI	GGCC	3 cut(s)	67, 279, 309
BtsCI	GGATG	4 cut(s)	154, 257, 356, 484
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	2 cut(s)	289, 291
CciI	TCATGA	1 cut(s)	334
CciNI	GCGGCCGC	1 cut(s)	277
CfoI	GCGC	2 cut(s)	409, 606
Csp6I	GTAC	2 cut(s)	27, 454
CviAII	CATG	2 cut(s)	335, 563
CviQI	GTAC	2 cut(s)	27, 454
DdeI	CTNAG	3 cut(s)	102, 144, 216
DpnI	GATC	3 cut(s)	393, 561, 576
DpnII	GATC	3 cut(s)	391, 559, 574
EaeI	YGGCCR	2 cut(s)	277, 307
EagI	CGGCCG	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
EclXI	CGGCCG	1 cut(s)	277
Eco130I	CCWWGG	2 cut(s)	68, 345
Eco147I	AGGCCT	1 cut(s)	67
Eco31I	GGTCTC	1 cut(s)	90
Eco52I	CGGCCG	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	114
EcoT14I	CCWWGG	2 cut(s)	68, 345
ErhI	CCWWGG	2 cut(s)	68, 345
Esp3I	CGTCTC	1 cut(s)	537
FaeI	CATG	2 cut(s)	338, 566
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FatI	CATG	2 cut(s)	334, 562
FauNDI	CATATG	1 cut(s)	163
FokI	GGATG	4 cut(s)	161, 244, 343, 471
FspBI	CTAG	1 cut(s)	616
FspI	TGCGCA	1 cut(s)	408
GlaI	GCGC	2 cut(s)	408, 605
GsaI	CCCAGC	2 cut(s)	128, 364
HaeIII	GGCC	3 cut(s)	67, 279, 309
HapII	CCGG	1 cut(s)	261
HhaI	GCGC	2 cut(s)	409, 606
Hin1II	CATG	2 cut(s)	338, 566
Hin6I	GCGC	2 cut(s)	407, 604
HinP1I	GCGC	2 cut(s)	407, 604
HindIII	AAGCTT	1 cut(s)	238
HpaII	CCGG	1 cut(s)	261
Hpy166II	GTNNAC	1 cut(s)	456
Hpy188I	TCNGA	2 cut(s)	95, 612
Hpy188III	TCNNGA	6 cut(s)	136, 215, 335, 389, 476, 569
Hpy8I	GTNNAC	1 cut(s)	456
HpyCH4III	ACNGT	3 cut(s)	31, 325, 507
HpyCH4V	TGCA	6 cut(s)	152, 161, 173, 250, 320, 353
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 158, 237, 612
HpyF3I	CTNAG	3 cut(s)	102, 144, 216
Hsp92II	CATG	2 cut(s)	338, 566
HspAI	GCGC	2 cut(s)	407, 604
Kzo9I	GATC	3 cut(s)	391, 559, 574
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	9 cut(s)	110, 228, 274, 327, 356, 374, 402, 554, 580
LweI	GCATC	4 cut(s)	139, 328, 365, 418
MaeI	CTAG	1 cut(s)	616
MalI	GATC	3 cut(s)	393, 561, 576
MboI	GATC	3 cut(s)	391, 559, 574
MboII	GAAGA	2 cut(s)	32, 584
MluCI	AATT	1 cut(s)	445
MnlI	CCTC	5 cut(s)	16, 44, 51, 139, 339
MslI	CAYNNNNRTG	1 cut(s)	336
MspA1I	CMGCKG	3 cut(s)	143, 317, 412
MspI	CCGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	4 cut(s)	149, 158, 237, 612
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	3 cut(s)	391, 559, 574
NlaIII	CATG	2 cut(s)	338, 566
NotI	GCGGCCGC	1 cut(s)	277
NsbI	TGCGCA	1 cut(s)	408
PaeR7I	CTCGAG	1 cut(s)	114
PagI	TCATGA	1 cut(s)	334
PceI	AGGCCT	1 cut(s)	67
PspFI	CCCAGC	2 cut(s)	124, 360
PspXI	VCTCGAGB	1 cut(s)	114
PvuII	CAGCTG	3 cut(s)	143, 317, 412
RsaI	GTAC	2 cut(s)	28, 455
RsaNI	GTAC	2 cut(s)	27, 454
RseI	CAYNNNNRTG	1 cut(s)	336
Sau3AI	GATC	3 cut(s)	391, 559, 574
SfaNI	GCATC	4 cut(s)	139, 328, 365, 418
Sfr274I	CTCGAG	1 cut(s)	114
SlaI	CTCGAG	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	3 cut(s)	114, 179, 235
SmoI	CTYRAG	3 cut(s)	114, 179, 235
Sse9I	AATT	1 cut(s)	445
SseBI	AGGCCT	1 cut(s)	67
SsiI	CCGC	3 cut(s)	276, 280, 488
SspMI	CTAG	1 cut(s)	616
StuI	AGGCCT	1 cut(s)	67
StyI	CCWWGG	2 cut(s)	68, 345
TaaI	ACNGT	3 cut(s)	31, 325, 507
TaqI	TCGA	3 cut(s)	115, 135, 443
TasI	AATT	1 cut(s)	445
TatI	WGTACW	1 cut(s)	453
TauI	GCSGC	2 cut(s)	279, 282
TscAI	CASTG	2 cut(s)	289, 298
TspDTI	ATGAA	2 cut(s)	17, 246
TspGWI	ACGGA	1 cut(s)	519
TspRI	CASTG	2 cut(s)	289, 298
XhoI	CTCGAG	1 cut(s)	114
XspI	CTAG	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.