Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0013847

Physical Location & Seq

Genomic Coordinates Forward (+)

9951909 .. 9954992

Gene Structure 3084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1130700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGTCAGCCATGGTTTCTGCTCTCACTCAAGTTATTGGAACCACCGAAGGGCATGCTGCCGTGCAACCAAACCCTACATCCATCTCAGACTCATCACTCCTAGTCAAACAAGAACCCGACCGCTCTGAACCGGTTCAAGATCAAGAGACCGTAAGGAGGCGACACTATAGAGGAGTGAGACAAAGACCTTGGGGCAAATGGGCAGCTGAAATACGTGACCCAAAGAAAGCAGCCAGAGTTTGGCTTGGGACTTTTGAGACCGCCGAAGATGCTGCCATTGCCTACGATAACGCAGCTCTCAGGTTCAAAGGCACAAAAGCCAAGCTCAACTTCCCCGAACGAGTTCAAGGCAAGACCGATTTTGGCATCCTAATGGGCAGTTCTGGTACTACAACAAACAGTAGCAGTGGTGCTGCCTCTACTCAACGAACACAAAATCTCATGAGACCAGCTGGCCAGACAGCTCCTGCTCCATTAATCACGTCGCAGCAGCCGGAAACTTTCCCTGATCTTTATCAGTACGCGCAGCTTCTTTCCAGCAATGATGCTGATTTCTGCAATTATTCTTTTTATCCATTTAATCAAGATCCAAGATTTACTTCACAATTTTCTCCATCATCGACGAATTTGTCATCTTCCACTGCATCACAAGATTCACAACCATCGCAACCAAGACGACAAGATCATGAGGAGGATGCGGGGAATAAGGACTGGAATTCGAGTAATCCAAGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071497 GO:0071704 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

246

Amino Acids

27.05

Weight (kDa)

6.33

Isoelectric Point (pI)

60.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	55 - 104	2.2e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13330
fragaria_vesca	FvH4_4g22650
malus_domestica	MD13G1130700.v1.1 MD16G1140800.v1.1
prunus_persica	Prupe.1G214900_v2.0.a1
pyrus_communis	pycom13g11410 pycom16g11140
rosa_chinensis	RchiOBHm_Chr4g0428891
rosa_laevigata	RLG00000007117
rosa_multiflora	Rmu_sc0008612.1_g000008
rosa_roxburghii	Rroxscaffold_5G00370560
rosa_rugosa	Rorug04G0230000
rosa_samantha	Rh4AG286700 Rh4BG292500 Rh4CG308500 Rh4DG289700
rosa_wichuraiana	Rw4G024860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	628
AccB7I	CCANNNNNTGG	1 cut(s)	240
AccBSI	CCGCTC	1 cut(s)	123
AccII	CGCG	1 cut(s)	524
AciI	CCGC	3 cut(s)	121, 261, 698
AclWI	GGATC	1 cut(s)	581
AcoI	YGGCCR	1 cut(s)	454
AcsI	RAATTY	2 cut(s)	625, 715
AfaI	GTAC	2 cut(s)	388, 521
AfiI	CCNNNNNNNGG	3 cut(s)	48, 156, 240
AgeI	ACCGGT	1 cut(s)	130
AgsI	TTSAA	3 cut(s)	137, 307, 347
AjiI	CACGTC	1 cut(s)	483
AjuI	GAANNNNNNNTTGG	4 cut(s)	314, 346, 583, 615
AluBI	AGCT	6 cut(s)	206, 296, 325, 452, 464, 529
AluI	AGCT	6 cut(s)	206, 296, 325, 452, 464, 529
Alw26I	GTCTC	4 cut(s)	140, 172, 251, 439
AlwI	GGATC	1 cut(s)	581
AlwNI	CAGNNNCTG	1 cut(s)	467
AoxI	GGCC	1 cut(s)	454
ApeKI	GCWGC	9 cut(s)	56, 203, 230, 272, 293, 413, 487, 490, 526
ApoI	RAATTY	2 cut(s)	625, 715
AseI	ATTAAT	1 cut(s)	476
AsiGI	ACCGGT	1 cut(s)	130
Asp700I	GAANNNNTTC	2 cut(s)	132, 342
AspLEI	GCGC	1 cut(s)	526
BalI	TGGCCA	1 cut(s)	456
BbvI	GCAGC	9 cut(s)	43, 215, 242, 259, 305, 400, 499, 502, 538
BccI	CCATC	3 cut(s)	89, 622, 670
BceAI	ACGGC	1 cut(s)	44
BcgI	CGANNNNNNTGC	4 cut(s)	35, 69, 254, 288
BcoDI	GTCTC	4 cut(s)	140, 172, 251, 439
BfaI	CTAG	1 cut(s)	101
BfmI	CTRYAG	1 cut(s)	166
BisI	GCNGC	9 cut(s)	57, 204, 231, 273, 294, 414, 488, 491, 527
BlsI	GCNGC	9 cut(s)	58, 205, 232, 274, 295, 415, 489, 492, 528
BmgBI	CACGTC	1 cut(s)	483
BmiI	GGNNCC	1 cut(s)	40
BmsI	GCATC	5 cut(s)	259, 375, 535, 653, 685
BpuEI	CTTGAG	1 cut(s)	12
BsaAI	YACGTR	1 cut(s)	215
BsaBI	GATNNNNATC	1 cut(s)	513
BsaI	GGTCTC	3 cut(s)	140, 251, 439
BsaJI	CCNNGG	3 cut(s)	9, 188, 728
BsaWI	WCCGGW	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 156, 240
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	716
Bse3DI	GCAATG	2 cut(s)	276, 547
Bse8I	GATNNNNATC	1 cut(s)	513
BseDI	CCNNGG	3 cut(s)	9, 188, 728
BseGI	GGATG	3 cut(s)	77, 366, 700
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	3 cut(s)	48, 156, 240
BseMI	GCAATG	2 cut(s)	276, 547
BseMII	CTCAG	2 cut(s)	99, 313
BseNI	ACTGG	1 cut(s)	716
BseRI	GAGGAG	2 cut(s)	186, 704
BseXI	GCAGC	9 cut(s)	43, 215, 242, 259, 305, 400, 499, 502, 538
Bsh1236I	CGCG	1 cut(s)	524
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	1 cut(s)	456
BshTI	ACCGGT	1 cut(s)	130
BsiEI	CGRYCG	1 cut(s)	121
BsiSI	CCGG	2 cut(s)	131, 494
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	3 cut(s)	48, 156, 240
BsmAI	GTCTC	4 cut(s)	140, 172, 251, 439
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	456
Bso31I	GGTCTC	3 cut(s)	140, 251, 439
Bsp143I	GATC	4 cut(s)	139, 508, 586, 682
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	3 cut(s)	121, 261, 698
BspANI	GGCC	1 cut(s)	456
BspCNI	CTCAG	2 cut(s)	98, 312
BspFNI	CGCG	1 cut(s)	524
BspHI	TCATGA	2 cut(s)	441, 685
BspLI	GGNNCC	1 cut(s)	40
BspPI	GGATC	1 cut(s)	581
BspTNI	GGTCTC	3 cut(s)	140, 251, 439
BsrBI	CCGCTC	1 cut(s)	123
BsrDI	GCAATG	2 cut(s)	276, 547
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	716
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	3 cut(s)	9, 188, 728
BssMI	GATC	4 cut(s)	139, 508, 586, 682
BssT1I	CCWWGG	3 cut(s)	9, 188, 728
Bst4CI	ACNGT	2 cut(s)	151, 401
BstBAI	YACGTR	1 cut(s)	215
BstC8I	GCNNGC	2 cut(s)	54, 454
BstDEI	CTNAG	2 cut(s)	85, 299
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	3 cut(s)	77, 366, 700
BstFNI	CGCG	1 cut(s)	524
BstHHI	GCGC	1 cut(s)	526
BstKTI	GATC	4 cut(s)	142, 511, 589, 685
BstMAI	GTCTC	4 cut(s)	140, 172, 251, 439
BstMBI	GATC	4 cut(s)	139, 508, 586, 682
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 278
BstNSI	RCATGY	1 cut(s)	56
BstSFI	CTRYAG	1 cut(s)	166
BstUI	CGCG	1 cut(s)	524
BstV1I	GCAGC	9 cut(s)	43, 215, 242, 259, 305, 400, 499, 502, 538
BstX2I	RGATCY	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	586
BsuRI	GGCC	1 cut(s)	456
BtgI	CCRYGG	1 cut(s)	9
BtgZI	GCGATG	1 cut(s)	648
BtrI	CACGTC	1 cut(s)	483
BtsCI	GGATG	3 cut(s)	77, 366, 700
BtsI	GCAGTG	2 cut(s)	412, 639
BtsIMutI	CAGTG	2 cut(s)	412, 639
Cac8I	GCNNGC	2 cut(s)	54, 454
CaiI	CAGNNNCTG	1 cut(s)	467
CciI	TCATGA	2 cut(s)	441, 685
CfoI	GCGC	1 cut(s)	526
Cfr10I	RCCGGY	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	387, 520
CspAI	ACCGGT	1 cut(s)	130
CviAII	CATG	4 cut(s)	10, 53, 442, 686
CviQI	GTAC	2 cut(s)	387, 520
DdeI	CTNAG	2 cut(s)	85, 299
DpnI	GATC	4 cut(s)	141, 510, 588, 684
DpnII	GATC	4 cut(s)	139, 508, 586, 682
DrdI	GACNNNNNNGTC	1 cut(s)	628
DseDI	GACNNNNNNGTC	1 cut(s)	628
EaeI	YGGCCR	1 cut(s)	454
Eco130I	CCWWGG	3 cut(s)	9, 188, 728
Eco31I	GGTCTC	3 cut(s)	140, 251, 439
EcoRI	GAATTC	1 cut(s)	715
EcoT14I	CCWWGG	3 cut(s)	9, 188, 728
ErhI	CCWWGG	3 cut(s)	9, 188, 728
FaeI	CATG	4 cut(s)	13, 56, 445, 689
FaiI	YATR	5 cut(s)	11, 54, 168, 443, 687
FalI	AAGNNNNNCTT	4 cut(s)	314, 346, 583, 615
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	4 cut(s)	9, 52, 441, 685
FauI	CCCGC	1 cut(s)	691
Fnu4HI	GCNGC	9 cut(s)	57, 204, 231, 273, 294, 414, 488, 491, 527
FokI	GGATG	3 cut(s)	64, 353, 707
Fsp4HI	GCNGC	9 cut(s)	57, 204, 231, 273, 294, 414, 488, 491, 527
FspBI	CTAG	1 cut(s)	101
GlaI	GCGC	1 cut(s)	525
GluI	GCNGC	9 cut(s)	57, 204, 231, 273, 294, 414, 488, 491, 527
HaeIII	GGCC	1 cut(s)	456
HapII	CCGG	2 cut(s)	131, 494
HhaI	GCGC	1 cut(s)	526
Hin1II	CATG	4 cut(s)	13, 56, 445, 689
Hin6I	GCGC	1 cut(s)	524
HinP1I	GCGC	1 cut(s)	524
HinfI	GANTC	2 cut(s)	89, 653
HpaII	CCGG	2 cut(s)	131, 494
Hpy188I	TCNGA	2 cut(s)	88, 127
Hpy188III	TCNNGA	5 cut(s)	137, 143, 442, 584, 686
Hpy99I	CGWCG	2 cut(s)	487, 625
HpyAV	CCTTC	1 cut(s)	41
HpyCH4III	ACNGT	2 cut(s)	151, 401
HpyCH4IV	ACGT	2 cut(s)	214, 482
HpyCH4V	TGCA	3 cut(s)	64, 558, 644
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 278
HpyF3I	CTNAG	2 cut(s)	85, 299
HpySE526I	ACGT	2 cut(s)	214, 482
Hsp92II	CATG	4 cut(s)	13, 56, 445, 689
HspAI	GCGC	1 cut(s)	524
Kzo9I	GATC	4 cut(s)	139, 508, 586, 682
LmnI	GCTCC	2 cut(s)	469, 475
Lsp1109I	GCAGC	9 cut(s)	43, 215, 242, 259, 305, 400, 499, 502, 538
LweI	GCATC	5 cut(s)	259, 375, 535, 653, 685
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	2 cut(s)	214, 482
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	4 cut(s)	141, 510, 588, 684
MbiI	CCGCTC	1 cut(s)	123
MboI	GATC	4 cut(s)	139, 508, 586, 682
MboII	GAAGA	2 cut(s)	278, 627
MflI	RGATCY	1 cut(s)	586
MlsI	TGGCCA	1 cut(s)	456
MluCI	AATT	4 cut(s)	559, 605, 625, 715
MluNI	TGGCCA	1 cut(s)	456
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	5 cut(s)	150, 164, 427, 682, 685
Mox20I	TGGCCA	1 cut(s)	456
MroXI	GAANNNNTTC	2 cut(s)	132, 342
MscI	TGGCCA	1 cut(s)	456
MseI	TTAA	2 cut(s)	476, 579
MslI	CAYNNNNRTG	1 cut(s)	371
Msp20I	TGGCCA	1 cut(s)	456
MspA1I	CMGCKG	2 cut(s)	206, 452
MspI	CCGG	2 cut(s)	131, 494
MvnI	CGCG	1 cut(s)	524
MwoI	GCNNNNNNNGC	2 cut(s)	269, 278
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	4 cut(s)	139, 508, 586, 682
NlaIII	CATG	4 cut(s)	13, 56, 445, 689
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	215
NspI	RCATGY	1 cut(s)	56
PaeI	GCATGC	1 cut(s)	56
PagI	TCATGA	2 cut(s)	441, 685
PdmI	GAANNNNTTC	2 cut(s)	132, 342
PfeI	GAWTC	1 cut(s)	653
PflMI	CCANNNNNTGG	1 cut(s)	240
PinAI	ACCGGT	1 cut(s)	130
PkrI	GCNGC	9 cut(s)	58, 205, 232, 274, 295, 415, 489, 492, 528
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Ppu21I	YACGTR	1 cut(s)	215
PshBI	ATTAAT	1 cut(s)	476
PspN4I	GGNNCC	1 cut(s)	40
PstNI	CAGNNNCTG	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	586
PvuII	CAGCTG	2 cut(s)	206, 452
RsaI	GTAC	2 cut(s)	388, 521
RsaNI	GTAC	2 cut(s)	387, 520
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	2 cut(s)	476, 579
SatI	GCNGC	9 cut(s)	57, 204, 231, 273, 294, 414, 488, 491, 527
Sau3AI	GATC	4 cut(s)	139, 508, 586, 682
SchI	GAGTC	1 cut(s)	83
SfaNI	GCATC	5 cut(s)	259, 375, 535, 653, 685
SfcI	CTRYAG	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
SphI	GCATGC	1 cut(s)	56
Sse9I	AATT	4 cut(s)	559, 605, 625, 715
SsiI	CCGC	3 cut(s)	121, 261, 698
SspMI	CTAG	1 cut(s)	101
StyI	CCWWGG	3 cut(s)	9, 188, 728
TaaI	ACNGT	2 cut(s)	151, 401
TaiI	ACGT	2 cut(s)	217, 485
TaqI	TCGA	2 cut(s)	620, 719
TaqII	GACCGA	1 cut(s)	371
TasI	AATT	4 cut(s)	559, 605, 625, 715
TfiI	GAWTC	1 cut(s)	653
Tru1I	TTAA	2 cut(s)	476, 579
Tru9I	TTAA	2 cut(s)	476, 579
TscAI	CASTG	2 cut(s)	412, 646
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	9 cut(s)	56, 203, 230, 272, 293, 413, 487, 490, 526
Tsp45I	GTSAC	1 cut(s)	215
TspRI	CASTG	2 cut(s)	412, 646
Van91I	CCANNNNNTGG	1 cut(s)	240
VspI	ATTAAT	1 cut(s)	476
XapI	RAATTY	2 cut(s)	625, 715
XceI	RCATGY	1 cut(s)	56
XmnI	GAANNNNTTC	2 cut(s)	132, 342
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.