Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0013847

Physical Location & Seq

Genomic Coordinates Reverse (-)

57003764 .. 57005648

Gene Structure 1885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG308500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTCAGCCATGGTTTCTGCTCTCACTCAAGTTATCGGAAACCCCGAAGAAGATAACAAGGTGCAATCAAACCCTTCAGTGAAAGATGAACCGGACCGGTCTCAACCGGTTCAAGATCAAGAGAGTACTGTGAGAAAAAGACATTATAGAGGAGTAAGGCAAAGGCCTTGGGGCAAATGGGCAGCCGAAATCCGAGACCCTAAGAAAGCAGCTCGAGTTTGGCTGGGAACTTTCGAGACAGCTGAGGATGCAGCCATTGCATATGATAATGCAGCTCTCAAGTTCAAAGGCACAAAAGCCAAACTCAACTTTCCTGAGCGAGTTCAAGGCAACTCAAGCTTCCTTATGCAGGGTTCATCCGGCACAACAAGTAGCGGCAGCAGTGTCTCCACTGAAAGAAATCTTGGCCGACCAGCTGCAACCGTTCCTCATCATGTTACTCCCTTGGTTGCGGCATCCCATCAGCAGCAGGAAAGTAGTAGTTTTCCTGATCTATATCAATATGCGCAGCTGCTTCAAAGCAATGATATTGATTTCAGCTCGAATTATCAGTACACTTCCAATCCACTCAATCATCCGCAGTTTTCTACTCCACAGTTTCCACCATCAACATATTATCCGTCTCATCAACAACAAGGACAGCAAGACGATCATGGTCAGGAAGATCAGCATGATAACAAGAACTGGAATAGGCGCAATCCGAGCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071497 GO:0071704 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

236

Amino Acids

26.49

Weight (kDa)

6.45

Isoelectric Point (pI)

58.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	48 - 97	8.6e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13330
fragaria_vesca	FvH4_4g22650
malus_domestica	MD13G1130700.v1.1 MD16G1140800.v1.1
prunus_persica	Prupe.1G214900_v2.0.a1
pyrus_communis	pycom13g11410 pycom16g11140
rosa_chinensis	RchiOBHm_Chr4g0428891
rosa_laevigata	RLG00000007117
rosa_multiflora	Rmu_sc0008612.1_g000008
rosa_roxburghii	Rroxscaffold_5G00370560
rosa_rugosa	Rorug04G0230000
rosa_samantha	Rh4AG286700 Rh4BG292500 Rh4CG308500 Rh4DG289700
rosa_wichuraiana	Rw4G024860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	507
AciI	CCGC	3 cut(s)	375, 452, 578
AcoI	YGGCCR	1 cut(s)	406
AcuI	CTGAAG	1 cut(s)	60
AfaI	GTAC	2 cut(s)	127, 554
AfiI	CCNNNNNNNGG	1 cut(s)	349
AgeI	ACCGGT	2 cut(s)	96, 106
AgsI	TTSAA	4 cut(s)	113, 286, 326, 518
AjuI	GAANNNNNNNTTGG	2 cut(s)	387, 419
AluBI	AGCT	7 cut(s)	212, 242, 275, 339, 416, 511, 540
AluI	AGCT	7 cut(s)	212, 242, 275, 339, 416, 511, 540
Alw26I	GTCTC	5 cut(s)	105, 189, 230, 391, 627
Ama87I	CYCGRG	1 cut(s)	213
AoxI	GGCC	2 cut(s)	164, 406
ApeKI	GCWGC	9 cut(s)	182, 209, 251, 272, 378, 416, 466, 508, 511
AsiGI	ACCGGT	2 cut(s)	96, 106
AspLEI	GCGC	2 cut(s)	508, 696
AspS9I	GGNCC	1 cut(s)	94
AvaI	CYCGRG	1 cut(s)	213
AvaII	GGWCC	1 cut(s)	94
BbvCI	CCTCAGC	1 cut(s)	243
BbvI	GCAGC	9 cut(s)	194, 221, 263, 284, 390, 403, 478, 498, 520
BccI	CCATC	2 cut(s)	468, 613
BcoDI	GTCTC	5 cut(s)	105, 189, 230, 391, 627
BmcAI	AGTACT	1 cut(s)	127
Bme18I	GGWCC	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	94
BmsI	GCATC	2 cut(s)	238, 464
Bpu10I	CCTNAGC	2 cut(s)	243, 315
BpuEI	CTTGAG	3 cut(s)	12, 263, 319
BsaBI	GATNNNNATC	1 cut(s)	495
BsaI	GGTCTC	2 cut(s)	105, 189
BsaJI	CCNNGG	3 cut(s)	9, 167, 444
BsaWI	WCCGGW	3 cut(s)	91, 96, 106
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse118I	RCCGGY	2 cut(s)	96, 106
Bse1I	ACTGG	1 cut(s)	689
Bse3DI	GCAATG	2 cut(s)	255, 529
Bse8I	GATNNNNATC	1 cut(s)	495
BseDI	CCNNGG	3 cut(s)	9, 167, 444
BseGI	GGATG	4 cut(s)	253, 356, 455, 574
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMI	GCAATG	2 cut(s)	255, 529
BseMII	CTCAG	2 cut(s)	234, 306
BseNI	ACTGG	1 cut(s)	689
BseRI	GAGGAG	1 cut(s)	165
BseXI	GCAGC	9 cut(s)	194, 221, 263, 284, 390, 403, 478, 498, 520
BseYI	CCCAGC	1 cut(s)	223
BshFI	GGCC	2 cut(s)	166, 408
BshTI	ACCGGT	2 cut(s)	96, 106
BsiHKCI	CYCGRG	1 cut(s)	213
BsiSI	CCGG	4 cut(s)	92, 97, 107, 360
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmAI	GTCTC	5 cut(s)	105, 189, 230, 391, 627
BsmBI	CGTCTC	1 cut(s)	627
BsnI	GGCC	2 cut(s)	166, 408
Bso31I	GGTCTC	2 cut(s)	105, 189
BsoBI	CYCGRG	1 cut(s)	213
Bsp143I	GATC	4 cut(s)	115, 490, 649, 664
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	3 cut(s)	375, 452, 578
BspANI	GGCC	2 cut(s)	166, 408
BspCNI	CTCAG	2 cut(s)	235, 307
BspTNI	GGTCTC	2 cut(s)	105, 189
BsrDI	GCAATG	2 cut(s)	255, 529
BsrFI	RCCGGY	2 cut(s)	96, 106
BsrI	ACTGG	1 cut(s)	689
BssAI	RCCGGY	2 cut(s)	96, 106
BssECI	CCNNGG	3 cut(s)	9, 167, 444
BssMI	GATC	4 cut(s)	115, 490, 649, 664
BssT1I	CCWWGG	3 cut(s)	9, 167, 444
Bst4CI	ACNGT	3 cut(s)	130, 424, 597
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstDEI	CTNAG	3 cut(s)	201, 243, 315
BstDSI	CCRYGG	1 cut(s)	9
BstENI	CCTNNNNNAGG	1 cut(s)	347
BstF5I	GGATG	4 cut(s)	253, 356, 455, 574
BstHHI	GCGC	2 cut(s)	508, 696
BstKTI	GATC	4 cut(s)	118, 493, 652, 667
BstMAI	GTCTC	5 cut(s)	105, 189, 230, 391, 627
BstMBI	GATC	4 cut(s)	115, 490, 649, 664
BstMWI	GCNNNNNNNGC	4 cut(s)	248, 257, 336, 702
BstV1I	GCAGC	9 cut(s)	194, 221, 263, 284, 390, 403, 478, 498, 520
BsuRI	GGCC	2 cut(s)	166, 408
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	4 cut(s)	253, 356, 455, 574
BtsI	GCAGTG	1 cut(s)	388
BtsIMutI	CAGTG	3 cut(s)	84, 388, 390
CfoI	GCGC	2 cut(s)	508, 696
Cfr10I	RCCGGY	2 cut(s)	96, 106
Cfr13I	GGNCC	1 cut(s)	94
CpoI	CGGWCCG	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	126, 553
CspAI	ACCGGT	2 cut(s)	96, 106
CspI	CGGWCCG	1 cut(s)	94
CviAII	CATG	4 cut(s)	10, 434, 653, 671
CviQI	GTAC	2 cut(s)	126, 553
DdeI	CTNAG	3 cut(s)	201, 243, 315
DpnI	GATC	4 cut(s)	117, 492, 651, 666
DpnII	GATC	4 cut(s)	115, 490, 649, 664
EaeI	YGGCCR	1 cut(s)	406
Eco130I	CCWWGG	3 cut(s)	9, 167, 444
Eco147I	AGGCCT	1 cut(s)	166
Eco31I	GGTCTC	2 cut(s)	105, 189
Eco47I	GGWCC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	60
Eco88I	CYCGRG	1 cut(s)	213
EcoNI	CCTNNNNNAGG	1 cut(s)	347
EcoT14I	CCWWGG	3 cut(s)	9, 167, 444
ErhI	CCWWGG	3 cut(s)	9, 167, 444
Esp3I	CGTCTC	1 cut(s)	627
FaeI	CATG	4 cut(s)	13, 437, 656, 674
FatI	CATG	4 cut(s)	9, 433, 652, 670
FauNDI	CATATG	1 cut(s)	262
FokI	GGATG	4 cut(s)	260, 343, 442, 561
FspI	TGCGCA	1 cut(s)	507
GlaI	GCGC	2 cut(s)	507, 695
GsaI	CCCAGC	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	166, 408
HapII	CCGG	4 cut(s)	92, 97, 107, 360
HhaI	GCGC	2 cut(s)	508, 696
Hin1II	CATG	4 cut(s)	13, 437, 656, 674
Hin6I	GCGC	2 cut(s)	506, 694
HinP1I	GCGC	2 cut(s)	506, 694
HindIII	AAGCTT	1 cut(s)	337
HpaII	CCGG	4 cut(s)	92, 97, 107, 360
Hpy166II	GTNNAC	1 cut(s)	555
Hpy188I	TCNGA	3 cut(s)	38, 194, 702
Hpy188III	TCNNGA	6 cut(s)	113, 119, 235, 314, 488, 659
Hpy8I	GTNNAC	1 cut(s)	555
HpyAV	CCTTC	1 cut(s)	84
HpyCH4III	ACNGT	3 cut(s)	130, 424, 597
HpyCH4V	TGCA	6 cut(s)	64, 251, 260, 272, 349, 419
HpyF10VI	GCNNNNNNNGC	4 cut(s)	248, 257, 336, 702
HpyF3I	CTNAG	3 cut(s)	201, 243, 315
Hsp92II	CATG	4 cut(s)	13, 437, 656, 674
HspAI	GCGC	2 cut(s)	506, 694
Kzo9I	GATC	4 cut(s)	115, 490, 649, 664
Lsp1109I	GCAGC	9 cut(s)	194, 221, 263, 284, 390, 403, 478, 498, 520
LweI	GCATC	2 cut(s)	238, 464
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	4 cut(s)	117, 492, 651, 666
MboI	GATC	4 cut(s)	115, 490, 649, 664
MboII	GAAGA	3 cut(s)	59, 62, 674
MluCI	AATT	1 cut(s)	544
MnlI	CCTC	3 cut(s)	143, 238, 438
MspA1I	CMGCKG	3 cut(s)	242, 416, 511
MspI	CCGG	4 cut(s)	92, 97, 107, 360
MwoI	GCNNNNNNNGC	4 cut(s)	248, 257, 336, 702
NcoI	CCATGG	1 cut(s)	9
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	4 cut(s)	115, 490, 649, 664
NlaIII	CATG	4 cut(s)	13, 437, 656, 674
NsbI	TGCGCA	1 cut(s)	507
PaeR7I	CTCGAG	1 cut(s)	213
PceI	AGGCCT	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PinAI	ACCGGT	2 cut(s)	96, 106
PspFI	CCCAGC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	94
PspXI	VCTCGAGB	1 cut(s)	213
PvuII	CAGCTG	3 cut(s)	242, 416, 511
RsaI	GTAC	2 cut(s)	127, 554
RsaNI	GTAC	2 cut(s)	126, 553
Rsr2I	CGGWCCG	1 cut(s)	94
RsrII	CGGWCCG	1 cut(s)	94
Sau3AI	GATC	4 cut(s)	115, 490, 649, 664
Sau96I	GGNCC	1 cut(s)	94
ScaI	AGTACT	1 cut(s)	127
SetI	ASST	8 cut(s)	63, 214, 244, 277, 341, 418, 513, 542
SfaNI	GCATC	2 cut(s)	238, 464
Sfr274I	CTCGAG	1 cut(s)	213
SinI	GGWCC	1 cut(s)	94
SlaI	CTCGAG	1 cut(s)	213
SmlI	CTYRAG	4 cut(s)	27, 213, 278, 334
SmoI	CTYRAG	4 cut(s)	27, 213, 278, 334
Sse9I	AATT	1 cut(s)	544
SseBI	AGGCCT	1 cut(s)	166
SsiI	CCGC	3 cut(s)	375, 452, 578
StuI	AGGCCT	1 cut(s)	166
StyI	CCWWGG	3 cut(s)	9, 167, 444
TaaI	ACNGT	3 cut(s)	130, 424, 597
TaqI	TCGA	3 cut(s)	214, 234, 542
TasI	AATT	1 cut(s)	544
TatI	WGTACW	2 cut(s)	125, 552
TauI	GCSGC	2 cut(s)	378, 455
TscAI	CASTG	3 cut(s)	84, 388, 397
TseI	GCWGC	9 cut(s)	182, 209, 251, 272, 378, 416, 466, 508, 511
TspDTI	ATGAA	2 cut(s)	102, 345
TspGWI	ACGGA	1 cut(s)	609
TspRI	CASTG	3 cut(s)	84, 388, 397
VpaK11BI	GGWCC	1 cut(s)	94
XagI	CCTNNNNNAGG	1 cut(s)	347
XhoI	CTCGAG	1 cut(s)	213
ZrmI	AGTACT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.