Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0013847

Physical Location & Seq

Genomic Coordinates Reverse (-)

25379899 .. 25382804

Gene Structure 2906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g22650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGTCAGCCATGGTTTCTGCTCTCACTCAAGTTATCGGAAACCCCGAAGAAGATAACAAGCAGGTGCAATCAAACCCTGCTTCAGTGAAAGATGAACCGGACCGCTCACAACCGGTTCAAGATCAAGAGAGTACTGTGAGAAGAAGGCACTATAGAGGAGTGAGGCAAAGGCCTTGGGGCAAATGGGCAGCCGAAATCCGAGACCCTAAGAAAGCAGCTCGAGTTTGGCTAGGAACTTTTGAGACAGCTGAGGATGCAGCCATTGCATATGATAATGCAGCTCTCAAATTTAAAGGCACAAAAGCCAAGCTCAACTTTCCTGAACGAGTTCAAGGTAACTCCAGCATCCTTATTCAGGGTTCATCCGGCACGACAAGTAGCGGCAGCAGTGTCTCCACTGAACGAAATCGGAGCCGACCAGCCTTAACCGTTCCTCATCATGATGCTTCCTATGTTGCACCGTCCCAGCCGCAGCAGGAAAGTAGTAGCTTCCCTGATCTATATCAATATGCGCAGCTTCTTCAAAGCAATGATATTGATTTCAGCTCGAATTATCAGTACCCTCCAAATAATCCATTCAATCAAGATTATCATCCGCAGTATTCTACTCCGCAGTTTCCACCATCAACATATTATCCTTCGCATCAGCAACAAGGACAGCAAGACGATCATGTTCAGGAAGATCATCAGAATGAGAACAAGAACTGGAATAGGCGTAATCCGAGCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071497 GO:0071704 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

244

Amino Acids

27.54

Weight (kDa)

6.17

Isoelectric Point (pI)

72.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	50 - 99	9e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13330
fragaria_vesca	FvH4_4g22650
malus_domestica	MD13G1130700.v1.1 MD16G1140800.v1.1
prunus_persica	Prupe.1G214900_v2.0.a1
pyrus_communis	pycom13g11410 pycom16g11140
rosa_chinensis	RchiOBHm_Chr4g0428891
rosa_laevigata	RLG00000007117
rosa_multiflora	Rmu_sc0008612.1_g000008
rosa_roxburghii	Rroxscaffold_5G00370560
rosa_rugosa	Rorug04G0230000
rosa_samantha	Rh4AG286700 Rh4BG292500 Rh4CG308500 Rh4DG289700
rosa_wichuraiana	Rw4G024860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	52
Acc16I	TGCGCA	1 cut(s)	513
Acc36I	ACCTGC	1 cut(s)	52
AccBSI	CCGCTC	1 cut(s)	105
AciI	CCGC	5 cut(s)	103, 381, 470, 596, 611
AcsI	RAATTY	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	66
AfaI	GTAC	2 cut(s)	133, 560
AfiI	CCNNNNNNNGG	1 cut(s)	355
AgeI	ACCGGT	1 cut(s)	112
AgsI	TTSAA	4 cut(s)	119, 332, 524, 580
AluBI	AGCT	7 cut(s)	218, 248, 281, 310, 489, 517, 546
AluI	AGCT	7 cut(s)	218, 248, 281, 310, 489, 517, 546
Alw26I	GTCTC	3 cut(s)	195, 236, 397
Ama87I	CYCGRG	1 cut(s)	219
AoxI	GGCC	1 cut(s)	170
ApeKI	GCWGC	7 cut(s)	188, 215, 257, 278, 384, 472, 514
ApoI	RAATTY	1 cut(s)	287
AsiGI	ACCGGT	1 cut(s)	112
Asp700I	GAANNNNTTC	1 cut(s)	327
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	1 cut(s)	100
AvaI	CYCGRG	1 cut(s)	219
AvaII	GGWCC	1 cut(s)	100
BbvCI	CCTCAGC	1 cut(s)	249
BbvI	GCAGC	7 cut(s)	200, 227, 269, 290, 396, 484, 526
BccI	CCATC	1 cut(s)	631
BcoDI	GTCTC	3 cut(s)	195, 236, 397
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	151
BfuAI	ACCTGC	1 cut(s)	52
BisI	GCNGC	9 cut(s)	189, 216, 258, 279, 382, 385, 470, 473, 515
BlsI	GCNGC	9 cut(s)	190, 217, 259, 280, 383, 386, 471, 474, 516
BmcAI	AGTACT	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	100
BmeT110I	CYCGRG	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	413
BmsI	GCATC	4 cut(s)	244, 354, 433, 652
BpmI	CTGGAG	1 cut(s)	325
Bpu10I	CCTNAGC	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	12
BsaBI	GATNNNNATC	2 cut(s)	501, 591
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	2 cut(s)	9, 173
BsaWI	WCCGGW	2 cut(s)	97, 112
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse118I	RCCGGY	1 cut(s)	112
Bse1I	ACTGG	1 cut(s)	710
Bse3DI	GCAATG	2 cut(s)	261, 535
Bse8I	GATNNNNATC	2 cut(s)	501, 591
BseDI	CCNNGG	2 cut(s)	9, 173
BseGI	GGATG	4 cut(s)	259, 345, 362, 592
BseJI	GATNNNNATC	2 cut(s)	501, 591
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMI	GCAATG	2 cut(s)	261, 535
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	710
BseRI	GAGGAG	1 cut(s)	171
BseXI	GCAGC	7 cut(s)	200, 227, 269, 290, 396, 484, 526
BseYI	CCCAGC	1 cut(s)	465
BshFI	GGCC	1 cut(s)	172
BshTI	ACCGGT	1 cut(s)	112
BsiHKCI	CYCGRG	1 cut(s)	219
BsiSI	CCGG	3 cut(s)	98, 113, 366
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmAI	GTCTC	3 cut(s)	195, 236, 397
BsmFI	GGGAC	1 cut(s)	448
BsnI	GGCC	1 cut(s)	172
Bso31I	GGTCTC	1 cut(s)	195
BsoBI	CYCGRG	1 cut(s)	219
Bsp143I	GATC	4 cut(s)	121, 496, 667, 682
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	5 cut(s)	103, 381, 470, 596, 611
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	1 cut(s)	241
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	413
BspMI	ACCTGC	1 cut(s)	52
BspTNI	GGTCTC	1 cut(s)	195
BsrBI	CCGCTC	1 cut(s)	105
BsrDI	GCAATG	2 cut(s)	261, 535
BsrFI	RCCGGY	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	710
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	2 cut(s)	9, 173
BssMI	GATC	4 cut(s)	121, 496, 667, 682
BssT1I	CCWWGG	2 cut(s)	9, 173
Bst4CI	ACNGT	3 cut(s)	136, 430, 462
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstDEI	CTNAG	2 cut(s)	207, 249
BstDSI	CCRYGG	1 cut(s)	9
BstENI	CCTNNNNNAGG	1 cut(s)	353
BstF5I	GGATG	4 cut(s)	259, 345, 362, 592
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	4 cut(s)	124, 499, 670, 685
BstMAI	GTCTC	3 cut(s)	195, 236, 397
BstMBI	GATC	4 cut(s)	121, 496, 667, 682
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 263
BstSFI	CTRYAG	1 cut(s)	151
BstV1I	GCAGC	7 cut(s)	200, 227, 269, 290, 396, 484, 526
BsuRI	GGCC	1 cut(s)	172
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	4 cut(s)	259, 345, 362, 592
BtsI	GCAGTG	1 cut(s)	394
BtsIMutI	CAGTG	3 cut(s)	90, 394, 396
BveI	ACCTGC	1 cut(s)	52
CciI	TCATGA	1 cut(s)	439
CfoI	GCGC	1 cut(s)	514
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	100
CpoI	CGGWCCG	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	132, 559
CspAI	ACCGGT	1 cut(s)	112
CspI	CGGWCCG	1 cut(s)	100
CviAII	CATG	3 cut(s)	10, 440, 671
CviQI	GTAC	2 cut(s)	132, 559
DdeI	CTNAG	2 cut(s)	207, 249
DpnI	GATC	4 cut(s)	123, 498, 669, 684
DpnII	GATC	4 cut(s)	121, 496, 667, 682
DraI	TTTAAA	1 cut(s)	292
Eco130I	CCWWGG	2 cut(s)	9, 173
Eco147I	AGGCCT	1 cut(s)	172
Eco31I	GGTCTC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	219
EcoNI	CCTNNNNNAGG	1 cut(s)	353
EcoT14I	CCWWGG	2 cut(s)	9, 173
ErhI	CCWWGG	2 cut(s)	9, 173
FaeI	CATG	3 cut(s)	13, 443, 674
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	3 cut(s)	9, 439, 670
FauNDI	CATATG	1 cut(s)	268
Fnu4HI	GCNGC	9 cut(s)	189, 216, 258, 279, 382, 385, 470, 473, 515
FokI	GGATG	4 cut(s)	266, 332, 349, 579
Fsp4HI	GCNGC	9 cut(s)	189, 216, 258, 279, 382, 385, 470, 473, 515
FspBI	CTAG	1 cut(s)	230
FspI	TGCGCA	1 cut(s)	513
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	9 cut(s)	189, 216, 258, 279, 382, 385, 470, 473, 515
GsaI	CCCAGC	1 cut(s)	469
GsuI	CTGGAG	1 cut(s)	325
HaeIII	GGCC	1 cut(s)	172
HapII	CCGG	3 cut(s)	98, 113, 366
HhaI	GCGC	1 cut(s)	514
Hin1II	CATG	3 cut(s)	13, 443, 674
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HpaII	CCGG	3 cut(s)	98, 113, 366
Hpy188I	TCNGA	5 cut(s)	38, 200, 411, 690, 723
Hpy188III	TCNNGA	6 cut(s)	119, 125, 320, 440, 584, 677
HpyAV	CCTTC	2 cut(s)	138, 648
HpyCH4III	ACNGT	3 cut(s)	136, 430, 462
HpyCH4V	TGCA	5 cut(s)	67, 257, 266, 278, 458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 263
HpyF3I	CTNAG	2 cut(s)	207, 249
Hsp92II	CATG	3 cut(s)	13, 443, 674
HspAI	GCGC	1 cut(s)	512
Kzo9I	GATC	4 cut(s)	121, 496, 667, 682
LmnI	GCTCC	1 cut(s)	411
Lsp1109I	GCAGC	7 cut(s)	200, 227, 269, 290, 396, 484, 526
LweI	GCATC	4 cut(s)	244, 354, 433, 652
MaeI	CTAG	1 cut(s)	230
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	4 cut(s)	123, 498, 669, 684
MbiI	CCGCTC	1 cut(s)	105
MboI	GATC	4 cut(s)	121, 496, 667, 682
MboII	GAAGA	5 cut(s)	59, 62, 153, 512, 692
MluCI	AATT	2 cut(s)	287, 550
MnlI	CCTC	5 cut(s)	149, 156, 244, 444, 573
MroXI	GAANNNNTTC	1 cut(s)	327
MseI	TTAA	2 cut(s)	291, 425
MslI	CAYNNNNRTG	2 cut(s)	441, 690
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	3 cut(s)	98, 113, 366
MwoI	GCNNNNNNNGC	2 cut(s)	254, 263
NcoI	CCATGG	1 cut(s)	9
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	4 cut(s)	121, 496, 667, 682
NlaIII	CATG	3 cut(s)	13, 443, 674
NlaIV	GGNNCC	1 cut(s)	413
NsbI	TGCGCA	1 cut(s)	513
PaeR7I	CTCGAG	1 cut(s)	219
PagI	TCATGA	1 cut(s)	439
PaqCI	CACCTGC	1 cut(s)	52
PceI	AGGCCT	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PdmI	GAANNNNTTC	1 cut(s)	327
PinAI	ACCGGT	1 cut(s)	112
PkrI	GCNGC	9 cut(s)	190, 217, 259, 280, 383, 386, 471, 474, 516
PspFI	CCCAGC	1 cut(s)	465
PspN4I	GGNNCC	1 cut(s)	413
PspPI	GGNCC	1 cut(s)	100
PspXI	VCTCGAGB	1 cut(s)	219
PvuII	CAGCTG	1 cut(s)	248
RsaI	GTAC	2 cut(s)	133, 560
RsaNI	GTAC	2 cut(s)	132, 559
RseI	CAYNNNNRTG	2 cut(s)	441, 690
Rsr2I	CGGWCCG	1 cut(s)	100
RsrII	CGGWCCG	1 cut(s)	100
SaqAI	TTAA	2 cut(s)	291, 425
SatI	GCNGC	9 cut(s)	189, 216, 258, 279, 382, 385, 470, 473, 515
Sau3AI	GATC	4 cut(s)	121, 496, 667, 682
Sau96I	GGNCC	1 cut(s)	100
ScaI	AGTACT	1 cut(s)	133
SetI	ASST	9 cut(s)	66, 220, 250, 283, 312, 337, 491, 519, 548
SfaNI	GCATC	4 cut(s)	244, 354, 433, 652
SfcI	CTRYAG	1 cut(s)	151
Sfr274I	CTCGAG	1 cut(s)	219
SinI	GGWCC	1 cut(s)	100
SlaI	CTCGAG	1 cut(s)	219
SmiMI	CAYNNNNRTG	2 cut(s)	441, 690
SmlI	CTYRAG	2 cut(s)	27, 219
SmoI	CTYRAG	2 cut(s)	27, 219
Sse9I	AATT	2 cut(s)	287, 550
SseBI	AGGCCT	1 cut(s)	172
SsiI	CCGC	5 cut(s)	103, 381, 470, 596, 611
SspMI	CTAG	1 cut(s)	230
StuI	AGGCCT	1 cut(s)	172
StyI	CCWWGG	2 cut(s)	9, 173
TaaI	ACNGT	3 cut(s)	136, 430, 462
TaqI	TCGA	2 cut(s)	220, 548
TasI	AATT	2 cut(s)	287, 550
TatI	WGTACW	1 cut(s)	131
TauI	GCSGC	2 cut(s)	384, 472
Tru1I	TTAA	2 cut(s)	291, 425
Tru9I	TTAA	2 cut(s)	291, 425
TscAI	CASTG	3 cut(s)	90, 394, 403
TseI	GCWGC	7 cut(s)	188, 215, 257, 278, 384, 472, 514
TspDTI	ATGAA	2 cut(s)	108, 351
TspRI	CASTG	3 cut(s)	90, 394, 403
VpaK11BI	GGWCC	1 cut(s)	100
XagI	CCTNNNNNAGG	1 cut(s)	353
XapI	RAATTY	1 cut(s)	287
XhoI	CTCGAG	1 cut(s)	219
XmnI	GAANNNNTTC	1 cut(s)	327
XspI	CTAG	1 cut(s)	230
ZrmI	AGTACT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.