Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0013847

Physical Location & Seq

Genomic Coordinates Forward (+)

13721566 .. 13723418

Gene Structure 1853 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007117

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTCAGCCATGGTTTCTGCTCTCACTAAAGTTATCGGAAACCCCGAAGAAGATAACAAGGTGCAATCAAACCCTTCAGTGAAAGATGAACCGGACCGGTCTCAACCGGTTCAAGATCAAGAGAGTACTGTGAGAAAAAGACATTATAGAGGAGTGAGGCAAAGGCCTTGGGGCAAATGGGCAGCCGAAATCCGAGACCCTAAGAAAGCAGCTCGAGTTTGGCTGGGAACTTTCGAGACAGCTGAGGACGCAGCCATTGCATATGATAATGCAGCTCTCAAGTTCAAAGGCACAAAAGCCAAGCTCAACTTTCCTGAGCGAGTTCAAGGCAACTCAAGCTTCCTTATGCAGGGTTCACCCGGCACAACAAGTAGCGGCAGCAGTGTCTCCACTGAACGAAATCTTGGCCGACCAGCTGCAACCGTTCCTCGTCATGATGCTCCCTTGGTTGCGCCATCCCAGCAGCAGCAGGAAAGTAGTAGTTTTCCTGATCTATATCAATATGCGCAGCTGCTTCAAAGCAATGATATTGATTTCAGCTCGAATTATCAGTACACTTCCAATCCATTCAATCAAGATTATCATCCGCAGTTTTCTACTCCGCAGTTTCCACCATCAACATATTATCCGTCTCATCAACAACAAGGACAGCAAGACGATCATGGTCAGGAAGATCAGTATGATAACAAGAACTGGAATAGGCGCAATCCGAGCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071497 GO:0071704 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

240

Amino Acids

26.99

Weight (kDa)

6.23

Isoelectric Point (pI)

66.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	48 - 97	8.8e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13330
fragaria_vesca	FvH4_4g22650
malus_domestica	MD13G1130700.v1.1 MD16G1140800.v1.1
prunus_persica	Prupe.1G214900_v2.0.a1
pyrus_communis	pycom13g11410 pycom16g11140
rosa_chinensis	RchiOBHm_Chr4g0428891
rosa_laevigata	RLG00000007117
rosa_multiflora	Rmu_sc0008612.1_g000008
rosa_roxburghii	Rroxscaffold_5G00370560
rosa_rugosa	Rorug04G0230000
rosa_samantha	Rh4AG286700 Rh4BG292500 Rh4CG308500 Rh4DG289700
rosa_wichuraiana	Rw4G024860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	507
AciI	CCGC	3 cut(s)	375, 587, 602
AcoI	YGGCCR	1 cut(s)	406
AcuI	CTGAAG	1 cut(s)	60
AfaI	GTAC	2 cut(s)	127, 554
AfiI	CCNNNNNNNGG	1 cut(s)	349
AgeI	ACCGGT	2 cut(s)	96, 106
AgsI	TTSAA	5 cut(s)	113, 286, 326, 518, 571
AjuI	GAANNNNNNNTTGG	2 cut(s)	387, 419
AluBI	AGCT	8 cut(s)	212, 242, 275, 304, 339, 416, 511, 540
AluI	AGCT	8 cut(s)	212, 242, 275, 304, 339, 416, 511, 540
Alw26I	GTCTC	5 cut(s)	105, 189, 230, 391, 636
Ama87I	CYCGRG	1 cut(s)	213
AoxI	GGCC	2 cut(s)	164, 406
AsiGI	ACCGGT	2 cut(s)	96, 106
AspLEI	GCGC	3 cut(s)	454, 508, 705
AspS9I	GGNCC	1 cut(s)	94
AsuC2I	CCSGG	1 cut(s)	360
AsuHPI	GGTGA	1 cut(s)	348
AvaI	CYCGRG	1 cut(s)	213
AvaII	GGWCC	1 cut(s)	94
BbvCI	CCTCAGC	1 cut(s)	243
BccI	CCATC	2 cut(s)	463, 622
BcnI	CCSGG	1 cut(s)	360
BcoDI	GTCTC	5 cut(s)	105, 189, 230, 391, 636
BmcAI	AGTACT	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	360
Bme18I	GGWCC	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	94
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	1 cut(s)	427
Bpu10I	CCTNAGC	2 cut(s)	243, 315
BpuEI	CTTGAG	2 cut(s)	263, 319
BpuMI	CCSGG	1 cut(s)	360
BsaBI	GATNNNNATC	2 cut(s)	495, 582
BsaI	GGTCTC	2 cut(s)	105, 189
BsaJI	CCNNGG	3 cut(s)	9, 167, 444
BsaWI	WCCGGW	3 cut(s)	91, 96, 106
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse118I	RCCGGY	2 cut(s)	96, 106
Bse1I	ACTGG	1 cut(s)	698
Bse3DI	GCAATG	2 cut(s)	255, 529
Bse8I	GATNNNNATC	2 cut(s)	495, 582
BseDI	CCNNGG	3 cut(s)	9, 167, 444
BseGI	GGATG	2 cut(s)	455, 583
BseJI	GATNNNNATC	2 cut(s)	495, 582
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMI	GCAATG	2 cut(s)	255, 529
BseMII	CTCAG	2 cut(s)	234, 306
BseNI	ACTGG	1 cut(s)	698
BseRI	GAGGAG	1 cut(s)	165
BseYI	CCCAGC	2 cut(s)	223, 459
BshFI	GGCC	2 cut(s)	166, 408
BshTI	ACCGGT	2 cut(s)	96, 106
BsiHKCI	CYCGRG	1 cut(s)	213
BsiSI	CCGG	4 cut(s)	92, 97, 107, 360
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmAI	GTCTC	5 cut(s)	105, 189, 230, 391, 636
BsmBI	CGTCTC	1 cut(s)	636
BsnI	GGCC	2 cut(s)	166, 408
Bso31I	GGTCTC	2 cut(s)	105, 189
BsoBI	CYCGRG	1 cut(s)	213
Bsp143I	GATC	4 cut(s)	115, 490, 658, 673
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	3 cut(s)	375, 587, 602
BspANI	GGCC	2 cut(s)	166, 408
BspCNI	CTCAG	2 cut(s)	235, 307
BspHI	TCATGA	1 cut(s)	433
BspTNI	GGTCTC	2 cut(s)	105, 189
BsrDI	GCAATG	2 cut(s)	255, 529
BsrFI	RCCGGY	2 cut(s)	96, 106
BsrI	ACTGG	1 cut(s)	698
BssAI	RCCGGY	2 cut(s)	96, 106
BssECI	CCNNGG	3 cut(s)	9, 167, 444
BssMI	GATC	4 cut(s)	115, 490, 658, 673
BssT1I	CCWWGG	3 cut(s)	9, 167, 444
Bst4CI	ACNGT	2 cut(s)	130, 424
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstDEI	CTNAG	3 cut(s)	201, 243, 315
BstDSI	CCRYGG	1 cut(s)	9
BstENI	CCTNNNNNAGG	1 cut(s)	347
BstF5I	GGATG	2 cut(s)	455, 583
BstHHI	GCGC	3 cut(s)	454, 508, 705
BstKTI	GATC	4 cut(s)	118, 493, 661, 676
BstMAI	GTCTC	5 cut(s)	105, 189, 230, 391, 636
BstMBI	GATC	4 cut(s)	115, 490, 658, 673
BstMWI	GCNNNNNNNGC	5 cut(s)	248, 257, 336, 460, 711
BstSCI	CCNGG	1 cut(s)	358
BsuRI	GGCC	2 cut(s)	166, 408
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	455, 583
BtsI	GCAGTG	1 cut(s)	388
BtsIMutI	CAGTG	3 cut(s)	84, 388, 390
CciI	TCATGA	1 cut(s)	433
CfoI	GCGC	3 cut(s)	454, 508, 705
Cfr10I	RCCGGY	2 cut(s)	96, 106
Cfr13I	GGNCC	1 cut(s)	94
CpoI	CGGWCCG	1 cut(s)	94
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	2 cut(s)	126, 553
CspAI	ACCGGT	2 cut(s)	96, 106
CspI	CGGWCCG	1 cut(s)	94
CviAII	CATG	3 cut(s)	10, 434, 662
CviQI	GTAC	2 cut(s)	126, 553
DdeI	CTNAG	3 cut(s)	201, 243, 315
DpnI	GATC	4 cut(s)	117, 492, 660, 675
DpnII	GATC	4 cut(s)	115, 490, 658, 673
EaeI	YGGCCR	1 cut(s)	406
Eco130I	CCWWGG	3 cut(s)	9, 167, 444
Eco147I	AGGCCT	1 cut(s)	166
Eco31I	GGTCTC	2 cut(s)	105, 189
Eco47I	GGWCC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	60
Eco88I	CYCGRG	1 cut(s)	213
EcoNI	CCTNNNNNAGG	1 cut(s)	347
EcoT14I	CCWWGG	3 cut(s)	9, 167, 444
ErhI	CCWWGG	3 cut(s)	9, 167, 444
Esp3I	CGTCTC	1 cut(s)	636
FaeI	CATG	3 cut(s)	13, 437, 665
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FatI	CATG	3 cut(s)	9, 433, 661
FauNDI	CATATG	1 cut(s)	262
FokI	GGATG	2 cut(s)	442, 570
FspI	TGCGCA	1 cut(s)	507
GlaI	GCGC	3 cut(s)	453, 507, 704
GsaI	CCCAGC	2 cut(s)	227, 463
HaeIII	GGCC	2 cut(s)	166, 408
HapII	CCGG	4 cut(s)	92, 97, 107, 360
HgaI	GACGC	1 cut(s)	257
HhaI	GCGC	3 cut(s)	454, 508, 705
Hin1II	CATG	3 cut(s)	13, 437, 665
Hin6I	GCGC	3 cut(s)	452, 506, 703
HinP1I	GCGC	3 cut(s)	452, 506, 703
HindIII	AAGCTT	1 cut(s)	337
HpaII	CCGG	4 cut(s)	92, 97, 107, 360
HphI	GGTGA	1 cut(s)	348
Hpy166II	GTNNAC	2 cut(s)	356, 555
Hpy188I	TCNGA	3 cut(s)	38, 194, 711
Hpy188III	TCNNGA	8 cut(s)	113, 119, 235, 314, 434, 488, 575, 668
Hpy8I	GTNNAC	2 cut(s)	356, 555
HpyAV	CCTTC	1 cut(s)	84
HpyCH4III	ACNGT	2 cut(s)	130, 424
HpyCH4V	TGCA	5 cut(s)	64, 260, 272, 349, 419
HpyF10VI	GCNNNNNNNGC	5 cut(s)	248, 257, 336, 460, 711
HpyF3I	CTNAG	3 cut(s)	201, 243, 315
Hsp92II	CATG	3 cut(s)	13, 437, 665
HspAI	GCGC	3 cut(s)	452, 506, 703
Kzo9I	GATC	4 cut(s)	115, 490, 658, 673
LmnI	GCTCC	1 cut(s)	445
LweI	GCATC	1 cut(s)	427
MalI	GATC	4 cut(s)	117, 492, 660, 675
MboI	GATC	4 cut(s)	115, 490, 658, 673
MboII	GAAGA	3 cut(s)	59, 62, 683
MluCI	AATT	1 cut(s)	544
MnlI	CCTC	4 cut(s)	143, 150, 238, 438
MspA1I	CMGCKG	3 cut(s)	242, 416, 511
MspI	CCGG	4 cut(s)	92, 97, 107, 360
MspR9I	CCNGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	5 cut(s)	248, 257, 336, 460, 711
NciI	CCSGG	1 cut(s)	360
NcoI	CCATGG	1 cut(s)	9
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	4 cut(s)	115, 490, 658, 673
NlaIII	CATG	3 cut(s)	13, 437, 665
NsbI	TGCGCA	1 cut(s)	507
PaeR7I	CTCGAG	1 cut(s)	213
PagI	TCATGA	1 cut(s)	433
PceI	AGGCCT	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PinAI	ACCGGT	2 cut(s)	96, 106
PspFI	CCCAGC	2 cut(s)	223, 459
PspPI	GGNCC	1 cut(s)	94
PspXI	VCTCGAGB	1 cut(s)	213
PvuII	CAGCTG	3 cut(s)	242, 416, 511
RsaI	GTAC	2 cut(s)	127, 554
RsaNI	GTAC	2 cut(s)	126, 553
Rsr2I	CGGWCCG	1 cut(s)	94
RsrII	CGGWCCG	1 cut(s)	94
Sau3AI	GATC	4 cut(s)	115, 490, 658, 673
Sau96I	GGNCC	1 cut(s)	94
ScaI	AGTACT	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	360
SetI	ASST	9 cut(s)	63, 214, 244, 277, 306, 341, 418, 513, 542
SfaNI	GCATC	1 cut(s)	427
Sfr274I	CTCGAG	1 cut(s)	213
SinI	GGWCC	1 cut(s)	94
SlaI	CTCGAG	1 cut(s)	213
SmlI	CTYRAG	3 cut(s)	213, 278, 334
SmoI	CTYRAG	3 cut(s)	213, 278, 334
Sse9I	AATT	1 cut(s)	544
SseBI	AGGCCT	1 cut(s)	166
SsiI	CCGC	3 cut(s)	375, 587, 602
StuI	AGGCCT	1 cut(s)	166
StyD4I	CCNGG	1 cut(s)	358
StyI	CCWWGG	3 cut(s)	9, 167, 444
TaaI	ACNGT	2 cut(s)	130, 424
TaqI	TCGA	3 cut(s)	214, 234, 542
TasI	AATT	1 cut(s)	544
TatI	WGTACW	2 cut(s)	125, 552
TauI	GCSGC	1 cut(s)	378
TscAI	CASTG	3 cut(s)	84, 388, 397
TspDTI	ATGAA	1 cut(s)	102
TspGWI	ACGGA	1 cut(s)	618
TspRI	CASTG	3 cut(s)	84, 388, 397
VpaK11BI	GGWCC	1 cut(s)	94
XagI	CCTNNNNNAGG	1 cut(s)	347
XhoI	CTCGAG	1 cut(s)	213
ZrmI	AGTACT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.