Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013847

Physical Location & Seq

Genomic Coordinates Reverse (-)

22789141 .. 22791923

Gene Structure 2783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G214900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTCTGCCATGGTTTCTGCTCTTACTCAAGTTATTGGAACCACCGAAGATCATCACCAAGGAACTGTAGTGCAATCAAACCCTTCATCCATCTCTCACTCTATAGTAAAAGAAGAACCGGACCGCCCTCAGCCGGTTCAAGAACAAGAGACTGTAAGGAGACGACACTATAGAGGAGTGAGACAAAGACCTTGGGGGAAGTGGGCAGCTGAAATACGTGACCCAAAGAAAGCAGCCAGAGTTTGGCTTGGGACTTTTGAGACAGCTGAAGACGCTGCCATTGCATACGATAACGCAGCTCTCAGGTTCAAAGGCACAAAAGCCAAGCTCAACTTTCCTGAACGAGTTCAAGGCAAGACTGACTTTGGCATGCTTATGGCTACTTCTGGTTCAACAAGAACAACAAGTAGTAGCAGTGCCTCTACTCAACAAAATCAAAAGTTCACGGGGCCAGCCAGTAGCGGTGTTGTTGCTCATCCGCCAGCTGCTCCGTCGATGGCGCCGCAGCCAGAAACTTTCCCTGATTTGTATCAGTATGCACAGCTTCTCTCCGGGAATGATATTGATTTCTCGTACCACTCTTCCAATCTATTTAATCACCAAGATCCATTTGGTTCACAAATTTCATCACCAACAACGCATTTTTCATCCTCGAATGCATCGCAACCGCCGCAAAGACAACAACAAGATGATCAAGACGAAGATGGGAAGGACTGGAATTGGAATAATCCAAGCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071497 GO:0071704 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

247

Amino Acids

27.2

Weight (kDa)

6.23

Isoelectric Point (pI)

58.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13330
fragaria_vesca	FvH4_4g22650
malus_domestica	MD13G1130700.v1.1 MD16G1140800.v1.1
prunus_persica	Prupe.1G214900_v2.0.a1
pyrus_communis	pycom13g11410 pycom16g11140
rosa_chinensis	RchiOBHm_Chr4g0428891
rosa_laevigata	RLG00000007117
rosa_multiflora	Rmu_sc0008612.1_g000008
rosa_roxburghii	Rroxscaffold_5G00370560
rosa_rugosa	Rorug04G0230000
rosa_samantha	Rh4AG286700 Rh4BG292500 Rh4CG308500 Rh4DG289700
rosa_wichuraiana	Rw4G024860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	499
AccB7I	CCANNNNNTGG	1 cut(s)	243
AciI	CCGC	6 cut(s)	124, 462, 479, 503, 668, 671
AclWI	GGATC	1 cut(s)	599
AcsI	RAATTY	1 cut(s)	621
AcuI	CTGAAG	1 cut(s)	288
AcyI	GRCGYC	1 cut(s)	500
AfaI	GTAC	1 cut(s)	575
AfiI	CCNNNNNNNGG	2 cut(s)	133, 243
AgsI	TTSAA	4 cut(s)	140, 310, 350, 393
AluBI	AGCT	6 cut(s)	209, 266, 299, 328, 485, 544
AluI	AGCT	6 cut(s)	209, 266, 299, 328, 485, 544
Alw26I	GTCTC	4 cut(s)	143, 154, 175, 254
AlwI	GGATC	1 cut(s)	599
AoxI	GGCC	1 cut(s)	449
ApeKI	GCWGC	6 cut(s)	206, 233, 275, 296, 485, 505
ApoI	RAATTY	1 cut(s)	621
Asp700I	GAANNNNTTC	1 cut(s)	345
AspLEI	GCGC	1 cut(s)	502
AspS9I	GGNCC	2 cut(s)	121, 449
AsuC2I	CCSGG	1 cut(s)	553
AsuHPI	GGTGA	3 cut(s)	47, 590, 621
AvaII	GGWCC	1 cut(s)	121
BanI	GGYRCC	1 cut(s)	499
BbsI	GAAGAC	1 cut(s)	276
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	6 cut(s)	218, 245, 262, 308, 472, 517
BccI	CCATC	3 cut(s)	98, 490, 698
BclI	TGATCA	1 cut(s)	691
BcnI	CCSGG	1 cut(s)	553
BcoDI	GTCTC	4 cut(s)	143, 154, 175, 254
BfmI	CTRYAG	3 cut(s)	66, 102, 169
BfoI	RGCGCY	1 cut(s)	503
BisI	GCNGC	8 cut(s)	207, 234, 276, 297, 486, 503, 506, 671
BlsI	GCNGC	8 cut(s)	208, 235, 277, 298, 487, 504, 507, 672
Bme1390I	CCNGG	1 cut(s)	553
Bme18I	GGWCC	1 cut(s)	121
BmgT120I	GGNCC	2 cut(s)	121, 449
BmiI	GGNNCC	3 cut(s)	40, 450, 501
BmrFI	CCNGG	1 cut(s)	553
BmsI	GCATC	1 cut(s)	668
BpiI	GAAGAC	1 cut(s)	276
Bpu10I	CCTNAGC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	12
BpuMI	CCSGG	1 cut(s)	553
BsaAI	YACGTR	1 cut(s)	218
BsaBI	GATNNNNATC	1 cut(s)	528
BsaHI	GRCGYC	1 cut(s)	500
BsaJI	CCNNGG	3 cut(s)	9, 58, 191
BsaWI	WCCGGW	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 243
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	3 cut(s)	456, 719, 736
Bse3DI	GCAATG	1 cut(s)	279
Bse8I	GATNNNNATC	1 cut(s)	528
BseDI	CCNNGG	3 cut(s)	9, 58, 191
BseGI	GGATG	3 cut(s)	86, 475, 647
BseJI	GATNNNNATC	1 cut(s)	528
BseLI	CCNNNNNNNGG	2 cut(s)	133, 243
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	2 cut(s)	143, 316
BseNI	ACTGG	3 cut(s)	456, 719, 736
BseRI	GAGGAG	1 cut(s)	189
BseXI	GCAGC	6 cut(s)	218, 245, 262, 308, 472, 517
BshFI	GGCC	1 cut(s)	451
BshNI	GGYRCC	1 cut(s)	499
BsiSI	CCGG	3 cut(s)	119, 134, 552
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	2 cut(s)	133, 243
BsmAI	GTCTC	4 cut(s)	143, 154, 175, 254
BsmBI	CGTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	265
BsmI	GAATGC	1 cut(s)	661
BsnI	GGCC	1 cut(s)	451
Bsp143I	GATC	3 cut(s)	49, 604, 691
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	6 cut(s)	124, 462, 479, 503, 668, 671
BspANI	GGCC	1 cut(s)	451
BspCNI	CTCAG	2 cut(s)	142, 315
BspLI	GGNNCC	3 cut(s)	40, 450, 501
BspPI	GGATC	1 cut(s)	599
BspT107I	GGYRCC	1 cut(s)	499
BsrDI	GCAATG	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	3 cut(s)	456, 719, 736
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	3 cut(s)	9, 58, 191
BssMI	GATC	3 cut(s)	49, 604, 691
BssNI	GRCGYC	1 cut(s)	500
BssT1I	CCWWGG	3 cut(s)	9, 58, 191
Bst4CI	ACNGT	2 cut(s)	67, 154
Bst6I	CTCTTC	1 cut(s)	586
BstACI	GRCGYC	1 cut(s)	500
BstBAI	YACGTR	1 cut(s)	218
BstC8I	GCNNGC	3 cut(s)	371, 453, 483
BstDEI	CTNAG	2 cut(s)	129, 302
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	3 cut(s)	86, 475, 647
BstH2I	RGCGCY	1 cut(s)	503
BstHHI	GCGC	1 cut(s)	502
BstKTI	GATC	3 cut(s)	52, 607, 694
BstMAI	GTCTC	4 cut(s)	143, 154, 175, 254
BstMBI	GATC	3 cut(s)	49, 604, 691
BstMWI	GCNNNNNNNGC	3 cut(s)	272, 281, 670
BstNSI	RCATGY	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	551
BstSFI	CTRYAG	3 cut(s)	66, 102, 169
BstV1I	GCAGC	6 cut(s)	218, 245, 262, 308, 472, 517
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	1 cut(s)	604
BstYI	RGATCY	1 cut(s)	604
BsuRI	GGCC	1 cut(s)	451
BtgI	CCRYGG	1 cut(s)	9
BtgZI	GCGATG	1 cut(s)	645
BtsCI	GGATG	3 cut(s)	86, 475, 647
BtsI	GCAGTG	1 cut(s)	421
BtsIMutI	CAGTG	1 cut(s)	421
Cac8I	GCNNGC	3 cut(s)	371, 453, 483
CfoI	GCGC	1 cut(s)	502
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	121, 449
CpoI	CGGWCCG	1 cut(s)	121
CseI	GACGC	1 cut(s)	281
Csp6I	GTAC	1 cut(s)	574
CspI	CGGWCCG	1 cut(s)	121
CviAII	CATG	2 cut(s)	10, 370
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	2 cut(s)	129, 302
DinI	GGCGCC	1 cut(s)	501
DpnI	GATC	3 cut(s)	51, 606, 693
DpnII	GATC	3 cut(s)	49, 604, 691
Eam1104I	CTCTTC	1 cut(s)	586
EarI	CTCTTC	1 cut(s)	586
EciI	GGCGGA	1 cut(s)	468
Eco130I	CCWWGG	3 cut(s)	9, 58, 191
Eco47I	GGWCC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	288
EcoT14I	CCWWGG	3 cut(s)	9, 58, 191
EcoT22I	ATGCAT	1 cut(s)	661
EgeI	GGCGCC	1 cut(s)	501
EheI	GGCGCC	1 cut(s)	501
ErhI	CCWWGG	3 cut(s)	9, 58, 191
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	2 cut(s)	13, 373
FaiI	YATR	7 cut(s)	11, 104, 171, 286, 371, 377, 537
FalI	AAGNNNNNCTT	4 cut(s)	317, 349, 347, 379
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	2 cut(s)	9, 369
FbaI	TGATCA	1 cut(s)	691
Fnu4HI	GCNGC	8 cut(s)	207, 234, 276, 297, 486, 503, 506, 671
FokI	GGATG	3 cut(s)	73, 462, 634
Fsp4HI	GCNGC	8 cut(s)	207, 234, 276, 297, 486, 503, 506, 671
GlaI	GCGC	1 cut(s)	501
GluI	GCNGC	8 cut(s)	207, 234, 276, 297, 486, 503, 506, 671
HaeII	RGCGCY	1 cut(s)	503
HaeIII	GGCC	1 cut(s)	451
HapII	CCGG	3 cut(s)	119, 134, 552
HgaI	GACGC	1 cut(s)	281
HhaI	GCGC	1 cut(s)	502
Hin1I	GRCGYC	1 cut(s)	500
Hin1II	CATG	2 cut(s)	13, 373
Hin6I	GCGC	1 cut(s)	500
HinP1I	GCGC	1 cut(s)	500
HpaII	CCGG	3 cut(s)	119, 134, 552
HphI	GGTGA	3 cut(s)	47, 590, 621
Hpy166II	GTNNAC	2 cut(s)	444, 617
Hpy188III	TCNNGA	3 cut(s)	140, 338, 695
Hpy8I	GTNNAC	2 cut(s)	444, 617
Hpy99I	CGWCG	1 cut(s)	496
HpyAV	CCTTC	2 cut(s)	93, 703
HpyCH4III	ACNGT	2 cut(s)	67, 154
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	4 cut(s)	73, 284, 539, 659
HpyF10VI	GCNNNNNNNGC	3 cut(s)	272, 281, 670
HpyF3I	CTNAG	2 cut(s)	129, 302
HpySE526I	ACGT	1 cut(s)	217
Hsp92I	GRCGYC	1 cut(s)	500
Hsp92II	CATG	2 cut(s)	13, 373
HspAI	GCGC	1 cut(s)	500
KasI	GGCGCC	1 cut(s)	499
Ksp22I	TGATCA	1 cut(s)	691
Kzo9I	GATC	3 cut(s)	49, 604, 691
LmnI	GCTCC	1 cut(s)	493
Lsp1109I	GCAGC	6 cut(s)	218, 245, 262, 308, 472, 517
LweI	GCATC	1 cut(s)	668
MaeII	ACGT	1 cut(s)	217
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	3 cut(s)	51, 606, 693
MboI	GATC	3 cut(s)	49, 604, 691
MboII	GAAGA	5 cut(s)	59, 125, 281, 573, 713
MflI	RGATCY	1 cut(s)	604
MluCI	AATT	2 cut(s)	621, 718
Mly113I	GGCGCC	1 cut(s)	500
MnlI	CCTC	4 cut(s)	138, 167, 430, 661
Mph1103I	ATGCAT	1 cut(s)	661
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	1 cut(s)	594
MslI	CAYNNNNRTG	1 cut(s)	374
MspA1I	CMGCKG	3 cut(s)	209, 266, 485
MspI	CCGG	3 cut(s)	119, 134, 552
MspR9I	CCNGG	1 cut(s)	553
Mva1269I	GAATGC	1 cut(s)	661
MwoI	GCNNNNNNNGC	3 cut(s)	272, 281, 670
NarI	GGCGCC	1 cut(s)	500
NciI	CCSGG	1 cut(s)	553
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	3 cut(s)	49, 604, 691
NlaIII	CATG	2 cut(s)	13, 373
NlaIV	GGNNCC	3 cut(s)	40, 450, 501
NmuCI	GTSAC	1 cut(s)	218
NsiI	ATGCAT	1 cut(s)	661
NspI	RCATGY	1 cut(s)	373
PaeI	GCATGC	1 cut(s)	373
PctI	GAATGC	1 cut(s)	661
PdmI	GAANNNNTTC	1 cut(s)	345
PflMI	CCANNNNNTGG	1 cut(s)	243
PfoI	TCCNGGA	1 cut(s)	551
PkrI	GCNGC	8 cut(s)	208, 235, 277, 298, 487, 504, 507, 672
PluTI	GGCGCC	1 cut(s)	503
Ppu21I	YACGTR	1 cut(s)	218
PspN4I	GGNNCC	3 cut(s)	40, 450, 501
PspPI	GGNCC	2 cut(s)	121, 449
PsuI	RGATCY	1 cut(s)	604
PvuII	CAGCTG	3 cut(s)	209, 266, 485
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
RseI	CAYNNNNRTG	1 cut(s)	374
Rsr2I	CGGWCCG	1 cut(s)	121
RsrII	CGGWCCG	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	594
SatI	GCNGC	8 cut(s)	207, 234, 276, 297, 486, 503, 506, 671
Sau3AI	GATC	3 cut(s)	49, 604, 691
Sau96I	GGNCC	2 cut(s)	121, 449
ScrFI	CCNGG	1 cut(s)	553
SetI	ASST	9 cut(s)	193, 211, 220, 268, 301, 308, 330, 487, 546
SfaNI	GCATC	1 cut(s)	668
SfcI	CTRYAG	3 cut(s)	66, 102, 169
SfoI	GGCGCC	1 cut(s)	501
SinI	GGWCC	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
SphI	GCATGC	1 cut(s)	373
Sse9I	AATT	2 cut(s)	621, 718
SsiI	CCGC	6 cut(s)	124, 462, 479, 503, 668, 671
SspDI	GGCGCC	1 cut(s)	499
StyD4I	CCNGG	1 cut(s)	551
StyI	CCWWGG	3 cut(s)	9, 58, 191
TaaI	ACNGT	2 cut(s)	67, 154
TaiI	ACGT	1 cut(s)	220
TaqI	TCGA	2 cut(s)	494, 653
TasI	AATT	2 cut(s)	621, 718
TauI	GCSGC	2 cut(s)	505, 673
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	6 cut(s)	206, 233, 275, 296, 485, 505
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	3 cut(s)	75, 615, 636
TspGWI	ACGGA	1 cut(s)	480
TspRI	CASTG	1 cut(s)	421
Van91I	CCANNNNNTGG	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	121
XapI	RAATTY	1 cut(s)	621
XceI	RCATGY	1 cut(s)	373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	608
XmnI	GAANNNNTTC	1 cut(s)	345
Zsp2I	ATGCAT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.