Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0013847

Physical Location & Seq

Genomic Coordinates Forward (+)

10866386 .. 10869126

Gene Structure 2741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1140800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTCAGCCATGGTTTCTGCTCTCACTCAAGTTATTGGAACCACCGATGATCATGCTGCCGTGCAACCAAACCCTACATCCATCTCAGACTCATCCCTCCTAGTCAAACAAGAACCCGACCGCTCTCAACCGGTTCAAGATCAAGAGCCCGTAAGGAGGCGACACTATAGAGGAGTGAGACAAAGACCTTGGGGAAAATGGGCAGCTGAAATACGTGACCCAAAGAAAGCAGCCAGAGTTTGGCTTGGGACTTTCGAGACCGCCGAAGATGCCGCCATTGCATATGATAACGCAGCTCTCAAGTTCAAAGGCACAAAAGCCAAGCTCAACTTCCCCGAACGAGTTCAAGGCAAGACCGATTTGGGCATCCTAATGGGCAGTTCTGGTAGTGGTGCTGCCTCGACTCAACGAACACAAAATCTCATGACACCAGCTGGCCATATTGTTAATCCTCAGCCAGCTCCTGCTCCATTAATGATGTCGCAGCAGCCAGAAACTTTCCCTGATCTTTATCAGTACGCGCGGCTTCTTTCCGGCAATGATGCTGATTTCTACAATTATTCTTCCTATCCATTTAATCAAGATCCAAGATTTACTTCACGGTTTTTGCCATCATCGACGCATTTTTCATCTTCCACTGCATCACAAGATTCACAACCACCGCAACAAGGACAACAAGATCATGAGGAAGATGGGGGGAATGAGGACCGGAATTGGAGTAATCCAAGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071497 GO:0071704 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

245

Amino Acids

27.07

Weight (kDa)

5.98

Isoelectric Point (pI)

60.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	55 - 104	9.1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13330
fragaria_vesca	FvH4_4g22650
malus_domestica	MD13G1130700.v1.1 MD16G1140800.v1.1
prunus_persica	Prupe.1G214900_v2.0.a1
pyrus_communis	pycom13g11410 pycom16g11140
rosa_chinensis	RchiOBHm_Chr4g0428891
rosa_laevigata	RLG00000007117
rosa_multiflora	Rmu_sc0008612.1_g000008
rosa_roxburghii	Rroxscaffold_5G00370560
rosa_rugosa	Rorug04G0230000
rosa_samantha	Rh4AG286700 Rh4BG292500 Rh4CG308500 Rh4DG289700
rosa_wichuraiana	Rw4G024860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	240
AccBSI	CCGCTC	1 cut(s)	123
AccII	CGCG	2 cut(s)	521, 523
AciI	CCGC	5 cut(s)	121, 261, 273, 523, 662
AclWI	GGATC	1 cut(s)	578
AcoI	YGGCCR	1 cut(s)	436
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	3 cut(s)	156, 240, 668
AgeI	ACCGGT	1 cut(s)	130
AgsI	TTSAA	3 cut(s)	137, 307, 347
AjuI	GAANNNNNNNTTGG	4 cut(s)	314, 346, 580, 612
AluBI	AGCT	5 cut(s)	206, 296, 325, 434, 461
AluI	AGCT	5 cut(s)	206, 296, 325, 434, 461
Alw26I	GTCTC	2 cut(s)	172, 251
AlwI	GGATC	1 cut(s)	578
AlwNI	CAGNNNCTG	1 cut(s)	464
AoxI	GGCC	1 cut(s)	436
ApeKI	GCWGC	7 cut(s)	56, 203, 230, 293, 395, 484, 487
AseI	ATTAAT	1 cut(s)	473
AsiGI	ACCGGT	1 cut(s)	130
Asp700I	GAANNNNTTC	1 cut(s)	342
AspLEI	GCGC	1 cut(s)	523
AspS9I	GGNCC	1 cut(s)	706
AvaII	GGWCC	1 cut(s)	706
BalI	TGGCCA	1 cut(s)	438
BanII	GRGCYC	1 cut(s)	150
BbvCI	CCTCAGC	1 cut(s)	453
BbvI	GCAGC	7 cut(s)	43, 215, 242, 305, 382, 496, 499
BccI	CCATC	3 cut(s)	89, 619, 686
BceAI	ACGGC	1 cut(s)	44
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BclI	TGATCA	1 cut(s)	49
BcoDI	GTCTC	2 cut(s)	172, 251
BfaI	CTAG	1 cut(s)	101
BfmI	CTRYAG	1 cut(s)	166
BisI	GCNGC	9 cut(s)	57, 204, 231, 273, 294, 396, 485, 488, 524
BlsI	GCNGC	9 cut(s)	58, 205, 232, 274, 295, 397, 486, 489, 525
Bme18I	GGWCC	1 cut(s)	706
BmgT120I	GGNCC	1 cut(s)	706
BmiI	GGNNCC	1 cut(s)	40
BmsI	GCATC	4 cut(s)	259, 375, 532, 650
Bpu10I	CCTNAGC	1 cut(s)	453
BpuEI	CTTGAG	2 cut(s)	12, 284
BsaAI	YACGTR	1 cut(s)	215
BsaBI	GATNNNNATC	1 cut(s)	510
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	3 cut(s)	9, 188, 725
BsaWI	WCCGGW	2 cut(s)	130, 708
Bsc4I	CCNNNNNNNGG	3 cut(s)	156, 240, 668
Bse118I	RCCGGY	1 cut(s)	130
Bse3DI	GCAATG	2 cut(s)	276, 544
Bse8I	GATNNNNATC	1 cut(s)	510
BseDI	CCNNGG	3 cut(s)	9, 188, 725
BseGI	GGATG	3 cut(s)	77, 92, 366
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	3 cut(s)	156, 240, 668
BseMI	GCAATG	2 cut(s)	276, 544
BseMII	CTCAG	2 cut(s)	99, 467
BseRI	GAGGAG	1 cut(s)	186
BseXI	GCAGC	7 cut(s)	43, 215, 242, 305, 382, 496, 499
Bsh1236I	CGCG	2 cut(s)	521, 523
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	1 cut(s)	438
BshTI	ACCGGT	1 cut(s)	130
BsiEI	CGRYCG	1 cut(s)	121
BsiSI	CCGG	3 cut(s)	131, 534, 709
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	3 cut(s)	156, 240, 668
BsmAI	GTCTC	2 cut(s)	172, 251
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	438
Bso31I	GGTCTC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	5 cut(s)	49, 139, 505, 583, 679
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	5 cut(s)	121, 261, 273, 523, 662
BspANI	GGCC	1 cut(s)	438
BspCNI	CTCAG	2 cut(s)	98, 466
BspFNI	CGCG	2 cut(s)	521, 523
BspHI	TCATGA	2 cut(s)	423, 682
BspLI	GGNNCC	1 cut(s)	40
BspPI	GGATC	1 cut(s)	578
BspTNI	GGTCTC	1 cut(s)	251
BsrBI	CCGCTC	1 cut(s)	123
BsrDI	GCAATG	2 cut(s)	276, 544
BsrFI	RCCGGY	1 cut(s)	130
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	3 cut(s)	9, 188, 725
BssMI	GATC	5 cut(s)	49, 139, 505, 583, 679
BssT1I	CCWWGG	3 cut(s)	9, 188, 725
Bst4CI	ACNGT	1 cut(s)	603
BstBAI	YACGTR	1 cut(s)	215
BstC8I	GCNNGC	2 cut(s)	436, 459
BstDEI	CTNAG	2 cut(s)	85, 453
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	3 cut(s)	77, 92, 366
BstFNI	CGCG	2 cut(s)	521, 523
BstHHI	GCGC	1 cut(s)	523
BstKTI	GATC	5 cut(s)	52, 142, 508, 586, 682
BstMAI	GTCTC	2 cut(s)	172, 251
BstMBI	GATC	5 cut(s)	49, 139, 505, 583, 679
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 278
BstSFI	CTRYAG	1 cut(s)	166
BstUI	CGCG	2 cut(s)	521, 523
BstV1I	GCAGC	7 cut(s)	43, 215, 242, 305, 382, 496, 499
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
BsuRI	GGCC	1 cut(s)	438
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	3 cut(s)	77, 92, 366
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	1 cut(s)	636
Cac8I	GCNNGC	2 cut(s)	436, 459
CaiI	CAGNNNCTG	1 cut(s)	464
CciI	TCATGA	2 cut(s)	423, 682
CfoI	GCGC	1 cut(s)	523
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	706
CseI	GACGC	1 cut(s)	628
Csp6I	GTAC	1 cut(s)	517
CspAI	ACCGGT	1 cut(s)	130
CviAII	CATG	4 cut(s)	10, 53, 424, 683
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	2 cut(s)	85, 453
DpnI	GATC	5 cut(s)	51, 141, 507, 585, 681
DpnII	GATC	5 cut(s)	49, 139, 505, 583, 679
EaeI	YGGCCR	1 cut(s)	436
Eco130I	CCWWGG	3 cut(s)	9, 188, 725
Eco24I	GRGCYC	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	706
EcoT14I	CCWWGG	3 cut(s)	9, 188, 725
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	3 cut(s)	9, 188, 725
FaeI	CATG	4 cut(s)	13, 56, 427, 686
FaiI	YATR	8 cut(s)	11, 54, 168, 283, 285, 425, 441, 684
FalI	AAGNNNNNCTT	4 cut(s)	314, 346, 580, 612
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	4 cut(s)	9, 52, 423, 682
FauNDI	CATATG	1 cut(s)	283
FbaI	TGATCA	1 cut(s)	49
Fnu4HI	GCNGC	9 cut(s)	57, 204, 231, 273, 294, 396, 485, 488, 524
FokI	GGATG	3 cut(s)	64, 79, 353
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	9 cut(s)	57, 204, 231, 273, 294, 396, 485, 488, 524
FspBI	CTAG	1 cut(s)	101
GlaI	GCGC	1 cut(s)	522
GluI	GCNGC	9 cut(s)	57, 204, 231, 273, 294, 396, 485, 488, 524
HaeIII	GGCC	1 cut(s)	438
HapII	CCGG	3 cut(s)	131, 534, 709
HgaI	GACGC	1 cut(s)	628
HhaI	GCGC	1 cut(s)	523
Hin1II	CATG	4 cut(s)	13, 56, 427, 686
Hin6I	GCGC	1 cut(s)	521
HinP1I	GCGC	1 cut(s)	521
HinfI	GANTC	3 cut(s)	89, 403, 650
HpaII	CCGG	3 cut(s)	131, 534, 709
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	6 cut(s)	137, 143, 256, 424, 581, 683
Hpy99I	CGWCG	1 cut(s)	622
HpyCH4III	ACNGT	1 cut(s)	603
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	3 cut(s)	64, 281, 641
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 278
HpyF3I	CTNAG	2 cut(s)	85, 453
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	4 cut(s)	13, 56, 427, 686
HspAI	GCGC	1 cut(s)	521
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	5 cut(s)	49, 139, 505, 583, 679
LmnI	GCTCC	2 cut(s)	466, 472
Lsp1109I	GCAGC	7 cut(s)	43, 215, 242, 305, 382, 496, 499
LweI	GCATC	4 cut(s)	259, 375, 532, 650
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	5 cut(s)	51, 141, 507, 585, 681
MbiI	CCGCTC	1 cut(s)	123
MboI	GATC	5 cut(s)	49, 139, 505, 583, 679
MboII	GAAGA	4 cut(s)	278, 555, 624, 701
MflI	RGATCY	1 cut(s)	583
MhlI	GDGCHC	1 cut(s)	150
MlsI	TGGCCA	1 cut(s)	438
MluCI	AATT	2 cut(s)	556, 712
MluNI	TGGCCA	1 cut(s)	438
MlyI	GAGTC	2 cut(s)	83, 397
MnlI	CCTC	7 cut(s)	107, 150, 164, 409, 462, 679, 697
Mox20I	TGGCCA	1 cut(s)	438
MroXI	GAANNNNTTC	1 cut(s)	342
MscI	TGGCCA	1 cut(s)	438
MseI	TTAA	3 cut(s)	447, 473, 576
MslI	CAYNNNNRTG	1 cut(s)	371
Msp20I	TGGCCA	1 cut(s)	438
MspA1I	CMGCKG	2 cut(s)	206, 434
MspI	CCGG	3 cut(s)	131, 534, 709
MvnI	CGCG	2 cut(s)	521, 523
MwoI	GCNNNNNNNGC	2 cut(s)	269, 278
NcoI	CCATGG	1 cut(s)	9
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	5 cut(s)	49, 139, 505, 583, 679
NlaIII	CATG	4 cut(s)	13, 56, 427, 686
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	215
PagI	TCATGA	2 cut(s)	423, 682
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PdmI	GAANNNNTTC	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	650
PflMI	CCANNNNNTGG	1 cut(s)	240
PinAI	ACCGGT	1 cut(s)	130
PkrI	GCNGC	9 cut(s)	58, 205, 232, 274, 295, 397, 486, 489, 525
PleI	GAGTC	2 cut(s)	83, 397
PpsI	GAGTC	2 cut(s)	83, 397
Ppu21I	YACGTR	1 cut(s)	215
PshBI	ATTAAT	1 cut(s)	473
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	706
PstNI	CAGNNNCTG	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	583
PvuII	CAGCTG	2 cut(s)	206, 434
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	3 cut(s)	447, 473, 576
SatI	GCNGC	9 cut(s)	57, 204, 231, 273, 294, 396, 485, 488, 524
Sau3AI	GATC	5 cut(s)	49, 139, 505, 583, 679
Sau96I	GGNCC	1 cut(s)	706
SchI	GAGTC	2 cut(s)	83, 397
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	7 cut(s)	190, 208, 217, 298, 327, 436, 463
SfaNI	GCATC	4 cut(s)	259, 375, 532, 650
SfcI	CTRYAG	1 cut(s)	166
SinI	GGWCC	1 cut(s)	706
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	2 cut(s)	27, 299
SmoI	CTYRAG	2 cut(s)	27, 299
Sse9I	AATT	2 cut(s)	556, 712
SsiI	CCGC	5 cut(s)	121, 261, 273, 523, 662
SspMI	CTAG	1 cut(s)	101
StyI	CCWWGG	3 cut(s)	9, 188, 725
TaaI	ACNGT	1 cut(s)	603
TaiI	ACGT	1 cut(s)	217
TaqI	TCGA	3 cut(s)	255, 401, 617
TaqII	GACCGA	1 cut(s)	371
TasI	AATT	2 cut(s)	556, 712
TauI	GCSGC	2 cut(s)	275, 526
TfiI	GAWTC	1 cut(s)	650
Tru1I	TTAA	3 cut(s)	447, 473, 576
Tru9I	TTAA	3 cut(s)	447, 473, 576
TscAI	CASTG	1 cut(s)	643
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	7 cut(s)	56, 203, 230, 293, 395, 484, 487
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	1 cut(s)	618
TspRI	CASTG	1 cut(s)	643
Van91I	CCANNNNNTGG	1 cut(s)	240
VpaK11BI	GGWCC	1 cut(s)	706
VspI	ATTAAT	1 cut(s)	473
XmnI	GAANNNNTTC	1 cut(s)	342
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.