Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006130

Physical Location & Seq

Genomic Coordinates Reverse (-)

4299705 .. 4301787

Gene Structure 2083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G13410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCGTCAATTTCGTCCTTTGGCTGCTTCCCTCAATCCACAGCGCTCGCCGGAACTTCCTCCACCACCAGATGCCGGACGACTGTGGCTGCTCGATTAGCTGACCAATCAGATGACTTCGCTCCTCTTCGTTCTTCTGGTGGGAATTGTGGATGTGTTAATAATTCTGGAGAGTTTGATCGCAGAAAGTTGTTGGTTTCTTCTGTTGGTTTGTTGATTGGAGCATTGTCATACGATTCTAAAGATGGAGACTTTGCATCAGCTTCTCAATTTGCTGACATGCCAGCGCTTAAAGGGAAGGATTATGGCAAAACAAAAATGAAGTATCCAGATTATACAGAAACACAGTCTGGTCTTCAGTATAAGGATTTGCGAGTAGGAACTGGGCCTATAGCAAAAAAGGGAGACAAAGTTGTGGTTGACTGGGACGGTTACACAATAGGGTACTATGGACGCATATTTGAAGCTCGCAATAAAACAAAAGGGGGTTCTTTTGAGGGCGATGATAAGGAATTTTTCAAATTTACCTTAGGATCCAATGAGGTGATACCTGCTTTTGAGGAGGCTGTCTCTGGGATGGCTCTCGGTGGTATCAGAAGGATAATTGTACCGCCAGAACTAGGATACCCGGATAATGACTACAACAAGAGTGGGCCGAGGCCGATGACTTTCTCTGGACAACGTGCATTAGATTTTGTGCTGAGGAACCAAGGGCTCATAGACAAGACACTTCTCTTTGATGTTGAACTCCTCAAAATTGTACCCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

256

Amino Acids

27.78

Weight (kDa)

7.55

Isoelectric Point (pI)

34.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	131 - 203	3.5e-09	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13410 AT5G13410 AT5G13410
fragaria_vesca	FvH4_4g22550 FvH4_4g22550
malus_domestica	MD16G1141800.v1.1
prunus_persica	Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1
pyrus_communis	pycom16g11230
rosa_chinensis	RchiOBHm_Chr4g0428781
rosa_laevigata	RLG00000007127
rosa_multiflora	Rmu_co8065596.1_g000001 Rmu_sc0018825.1_g000003 Rmu_sc0022301.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370450
rosa_rugosa	Rorug04G0228500 Rorug04G0228600 Rorug04G0228700
rosa_samantha	Rh4AG285800 Rh4BG291700 Rh4CG307500 Rh4DG288800
rosa_wichuraiana	Rw4G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	559
AciI	CCGC	1 cut(s)	611
AclWI	GGATC	2 cut(s)	528, 541
AcsI	RAATTY	2 cut(s)	512, 521
AcuI	CTGAAG	1 cut(s)	341
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	446, 609, 762
AfeI	AGCGCT	2 cut(s)	45, 288
AfiI	CCNNNNNNNGG	2 cut(s)	75, 620
AgsI	TTSAA	3 cut(s)	464, 520, 746
AluBI	AGCT	3 cut(s)	101, 263, 467
AluI	AGCT	3 cut(s)	101, 263, 467
Alw26I	GTCTC	3 cut(s)	243, 399, 574
AlwI	GGATC	2 cut(s)	528, 541
Aor51HI	AGCGCT	2 cut(s)	45, 288
AoxI	GGCC	3 cut(s)	386, 653, 659
ApeKI	GCWGC	2 cut(s)	24, 89
ApoI	RAATTY	2 cut(s)	512, 521
AspLEI	GCGC	2 cut(s)	46, 289
AspS9I	GGNCC	2 cut(s)	386, 653
AsuC2I	CCSGG	1 cut(s)	629
AsuHPI	GGTGA	1 cut(s)	556
AxyI	CCTNAGG	1 cut(s)	529
BamHI	GGATCC	1 cut(s)	533
BanII	GRGCYC	1 cut(s)	717
BbsI	GAAGAC	1 cut(s)	347
BbvCI	CCTCAGC	1 cut(s)	701
BbvI	GCAGC	2 cut(s)	11, 76
BccI	CCATC	2 cut(s)	239, 571
BciVI	GTATCC	2 cut(s)	336, 617
BcnI	CCSGG	1 cut(s)	629
BcoDI	GTCTC	3 cut(s)	243, 399, 574
BfaI	CTAG	1 cut(s)	620
BfmI	CTRYAG	1 cut(s)	390
BfoI	RGCGCY	2 cut(s)	47, 290
BfuAI	ACCTGC	1 cut(s)	559
BfuI	GTATCC	2 cut(s)	336, 617
BisI	GCNGC	2 cut(s)	25, 90
BlsI	GCNGC	2 cut(s)	26, 91
Bme1390I	CCNGG	1 cut(s)	629
BmgT120I	GGNCC	2 cut(s)	386, 653
BmiI	GGNNCC	2 cut(s)	535, 707
BmrFI	CCNGG	1 cut(s)	629
BmrI	ACTGGG	2 cut(s)	393, 433
BmsI	GCATC	2 cut(s)	62, 266
BmuI	ACTGGG	2 cut(s)	393, 433
BpiI	GAAGAC	1 cut(s)	347
BplI	GAGNNNNNCTC	2 cut(s)	554, 586
BpmI	CTGGAG	1 cut(s)	189
Bpu10I	CCTNAGC	1 cut(s)	701
BpuMI	CCSGG	1 cut(s)	629
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	656, 709
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 620
Bse1I	ACTGG	2 cut(s)	388, 428
Bse21I	CCTNAGG	1 cut(s)	529
BseDI	CCNNGG	2 cut(s)	656, 709
BseGI	GGATG	2 cut(s)	158, 582
BseLI	CCNNNNNNNGG	2 cut(s)	75, 620
BseMII	CTCAG	1 cut(s)	692
BseNI	ACTGG	2 cut(s)	388, 428
BseRI	GAGGAG	3 cut(s)	114, 575, 740
BseXI	GCAGC	2 cut(s)	11, 76
BshFI	GGCC	3 cut(s)	388, 655, 661
BsiSI	CCGG	3 cut(s)	51, 76, 629
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	2 cut(s)	75, 620
BsmAI	GTCTC	3 cut(s)	243, 399, 574
BsmFI	GGGAC	1 cut(s)	440
BsnI	GGCC	3 cut(s)	388, 655, 661
Bsp1286I	GDGCHC	1 cut(s)	717
Bsp143I	GATC	2 cut(s)	178, 533
BspACI	CCGC	1 cut(s)	611
BspANI	GGCC	3 cut(s)	388, 655, 661
BspCNI	CTCAG	1 cut(s)	693
BspLI	GGNNCC	2 cut(s)	535, 707
BspMI	ACCTGC	1 cut(s)	559
BspPI	GGATC	2 cut(s)	528, 541
BsrI	ACTGG	2 cut(s)	388, 428
BssECI	CCNNGG	2 cut(s)	656, 709
BssMI	GATC	2 cut(s)	178, 533
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	709
Bst4CI	ACNGT	3 cut(s)	85, 348, 431
Bst6I	CTCTTC	1 cut(s)	132
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	3 cut(s)	48, 285, 469
BstDEI	CTNAG	2 cut(s)	529, 701
BstF5I	GGATG	2 cut(s)	158, 582
BstH2I	RGCGCY	2 cut(s)	47, 290
BstHHI	GCGC	2 cut(s)	46, 289
BstKTI	GATC	2 cut(s)	181, 536
BstMAI	GTCTC	3 cut(s)	243, 399, 574
BstMBI	GATC	2 cut(s)	178, 533
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	627
BstSFI	CTRYAG	1 cut(s)	390
BstV1I	GCAGC	2 cut(s)	11, 76
BstV2I	GAAGAC	1 cut(s)	347
BstX2I	RGATCY	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	533
Bsu36I	CCTNAGG	1 cut(s)	529
BsuI	GTATCC	2 cut(s)	336, 617
BsuRI	GGCC	3 cut(s)	388, 655, 661
BtgZI	GCGATG	1 cut(s)	516
BtsCI	GGATG	2 cut(s)	158, 582
BveI	ACCTGC	1 cut(s)	559
Cac8I	GCNNGC	3 cut(s)	48, 285, 469
CfoI	GCGC	2 cut(s)	46, 289
Cfr13I	GGNCC	2 cut(s)	386, 653
CseI	GACGC	1 cut(s)	462
Csp6I	GTAC	3 cut(s)	445, 608, 761
CspCI	CAANNNNNGTGG	2 cut(s)	631, 666
CviAII	CATG	1 cut(s)	280
CviQI	GTAC	3 cut(s)	445, 608, 761
DdeI	CTNAG	2 cut(s)	529, 701
DpnI	GATC	2 cut(s)	180, 535
DpnII	GATC	2 cut(s)	178, 533
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	709
Eco24I	GRGCYC	1 cut(s)	717
Eco47III	AGCGCT	2 cut(s)	45, 288
Eco57I	CTGAAG	1 cut(s)	341
Eco81I	CCTNAGG	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	709
EcoT38I	GRGCYC	1 cut(s)	717
ErhI	CCWWGG	1 cut(s)	709
FaeI	CATG	1 cut(s)	283
FaiI	YATR	9 cut(s)	232, 281, 306, 336, 363, 392, 450, 458, 719
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	25, 90
FokI	GGATG	2 cut(s)	165, 589
FriOI	GRGCYC	1 cut(s)	717
Fsp4HI	GCNGC	2 cut(s)	25, 90
FspBI	CTAG	1 cut(s)	620
GlaI	GCGC	2 cut(s)	45, 288
GluI	GCNGC	2 cut(s)	25, 90
GsuI	CTGGAG	1 cut(s)	189
HaeII	RGCGCY	2 cut(s)	47, 290
HaeIII	GGCC	3 cut(s)	388, 655, 661
HapII	CCGG	3 cut(s)	51, 76, 629
HgaI	GACGC	1 cut(s)	462
HhaI	GCGC	2 cut(s)	46, 289
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	283
Hin6I	GCGC	2 cut(s)	44, 287
HinP1I	GCGC	2 cut(s)	44, 287
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	3 cut(s)	51, 76, 629
HphI	GGTGA	1 cut(s)	556
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	2 cut(s)	112, 596
Hpy188III	TCNNGA	3 cut(s)	168, 329, 675
Hpy8I	GTNNAC	1 cut(s)	421
HpyAV	CCTTC	2 cut(s)	292, 591
HpyCH4III	ACNGT	3 cut(s)	85, 348, 431
HpyCH4IV	ACGT	1 cut(s)	682
HpyCH4V	TGCA	2 cut(s)	257, 686
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	2 cut(s)	529, 701
HpySE526I	ACGT	1 cut(s)	682
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	283
HspAI	GCGC	2 cut(s)	44, 287
Kzo9I	GATC	2 cut(s)	178, 533
LmnI	GCTCC	2 cut(s)	127, 221
Lsp1109I	GCAGC	2 cut(s)	11, 76
LweI	GCATC	2 cut(s)	62, 266
MaeI	CTAG	1 cut(s)	620
MaeII	ACGT	1 cut(s)	682
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	2 cut(s)	180, 535
MboI	GATC	2 cut(s)	178, 533
MboII	GAAGA	4 cut(s)	119, 126, 192, 347
MfeI	CAATTG	1 cut(s)	766
MflI	RGATCY	1 cut(s)	533
MhlI	GDGCHC	1 cut(s)	717
MluCI	AATT	9 cut(s)	9, 145, 163, 269, 512, 521, 603, 756, 766
MseI	TTAA	2 cut(s)	159, 291
MspI	CCGG	3 cut(s)	51, 76, 629
MspR9I	CCNGG	1 cut(s)	629
MunI	CAATTG	1 cut(s)	766
MwoI	GCNNNNNNNGC	1 cut(s)	98
NciI	CCSGG	1 cut(s)	629
NdeII	GATC	2 cut(s)	178, 533
NlaIII	CATG	1 cut(s)	283
NlaIV	GGNNCC	2 cut(s)	535, 707
NmeAIII	GCCGAG	1 cut(s)	681
NspI	RCATGY	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	236
PkrI	GCNGC	2 cut(s)	26, 91
PspN4I	GGNNCC	2 cut(s)	535, 707
PspPI	GGNCC	2 cut(s)	386, 653
PsuI	RGATCY	1 cut(s)	533
RsaI	GTAC	3 cut(s)	446, 609, 762
RsaNI	GTAC	3 cut(s)	445, 608, 761
SaqAI	TTAA	2 cut(s)	159, 291
SatI	GCNGC	2 cut(s)	25, 90
Sau3AI	GATC	2 cut(s)	178, 533
Sau96I	GGNCC	2 cut(s)	386, 653
ScrFI	CCNGG	1 cut(s)	629
SduI	GDGCHC	1 cut(s)	717
SetI	ASST	7 cut(s)	103, 265, 469, 530, 546, 553, 685
SfaNI	GCATC	2 cut(s)	62, 266
SfcI	CTRYAG	1 cut(s)	390
Sse9I	AATT	9 cut(s)	9, 145, 163, 269, 512, 521, 603, 756, 766
SsiI	CCGC	1 cut(s)	611
SspMI	CTAG	1 cut(s)	620
StyD4I	CCNGG	1 cut(s)	627
StyI	CCWWGG	1 cut(s)	709
TaaI	ACNGT	3 cut(s)	85, 348, 431
TaiI	ACGT	1 cut(s)	685
TaqI	TCGA	1 cut(s)	94
TasI	AATT	9 cut(s)	9, 145, 163, 269, 512, 521, 603, 756, 766
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	2 cut(s)	159, 291
Tru9I	TTAA	2 cut(s)	159, 291
TseI	GCWGC	2 cut(s)	24, 89
TspDTI	ATGAA	1 cut(s)	335
XapI	RAATTY	2 cut(s)	512, 521
XceI	RCATGY	1 cut(s)	283
XspI	CTAG	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.